File List

Here is a list of all files with brief descriptions:

[detail level 123456]

▼ src
▼ c
► analyses
AdjointBalancethickness2Analysis.cpp
AdjointBalancethickness2Analysis.h	: header file for generic external result object
AdjointBalancethicknessAnalysis.cpp
AdjointBalancethicknessAnalysis.h	: header file for generic external result object
AdjointHorizAnalysis.cpp
AdjointHorizAnalysis.h	: header file for generic external result object
analyses.h
Analysis.h	Abstract class for Analysis objects
Balancethickness2Analysis.cpp
Balancethickness2Analysis.h	: header file for generic external result object
BalancethicknessAnalysis.cpp
BalancethicknessAnalysis.h	: header file for generic external result object
BalancethicknessSoftAnalysis.cpp
BalancethicknessSoftAnalysis.h	: header file for generic external result object
BalancevelocityAnalysis.cpp
BalancevelocityAnalysis.h	: header file for generic external result object
DamageEvolutionAnalysis.cpp
DamageEvolutionAnalysis.h	: header file for generic external result object
DepthAverageAnalysis.cpp
DepthAverageAnalysis.h	: header file for generic external result object
EnthalpyAnalysis.cpp
EnthalpyAnalysis.h	: header file for generic external result object
EnumToAnalysis.cpp
EnumToAnalysis.h
EsaAnalysis.cpp
EsaAnalysis.h	: header file for generic external result object
ExtrapolationAnalysis.cpp
ExtrapolationAnalysis.h	: header file for generic external result object
ExtrudeFromBaseAnalysis.cpp
ExtrudeFromBaseAnalysis.h	: header file for generic external result object
ExtrudeFromTopAnalysis.cpp
ExtrudeFromTopAnalysis.h	: header file for generic external result object
FreeSurfaceBaseAnalysis.cpp
FreeSurfaceBaseAnalysis.h	: header file for generic external result object
FreeSurfaceTopAnalysis.cpp
FreeSurfaceTopAnalysis.h	: header file for generic external result object
GiaAnalysis.cpp
GiaAnalysis.h	: header file for generic external result object
GLheightadvectionAnalysis.cpp
GLheightadvectionAnalysis.h	: header file for generic external result object
HydrologyDCEfficientAnalysis.cpp
HydrologyDCEfficientAnalysis.h	: header file for generic external result object
HydrologyDCInefficientAnalysis.cpp
HydrologyDCInefficientAnalysis.h	: header file for generic external result object
HydrologyGlaDSAnalysis.cpp
HydrologyGlaDSAnalysis.h	: header file for generic external result object
HydrologyPismAnalysis.cpp
HydrologyPismAnalysis.h	: header file for generic external result object
HydrologyShaktiAnalysis.cpp
HydrologyShaktiAnalysis.h	: header file for generic external result object
HydrologyShreveAnalysis.cpp
HydrologyShreveAnalysis.h	: header file for generic external result object
L2ProjectionBaseAnalysis.cpp
L2ProjectionBaseAnalysis.h	: header file for generic external result object
L2ProjectionEPLAnalysis.cpp
L2ProjectionEPLAnalysis.h	: header file for generic external result object
LevelsetAnalysis.cpp
LevelsetAnalysis.h	: header file for generic external result object
LoveAnalysis.cpp
LoveAnalysis.h	: header file for generic external result object
MasstransportAnalysis.cpp
MasstransportAnalysis.h	: header file for generic external result object
MeltingAnalysis.cpp
MeltingAnalysis.h	: header file for generic external result object
SealevelriseAnalysis.cpp
SealevelriseAnalysis.h	: header file for generic external result object
SmbAnalysis.cpp
SmbAnalysis.h	: header file for generic external result object
SmoothAnalysis.cpp
SmoothAnalysis.h	: header file for generic external result object
StressbalanceAnalysis.cpp
StressbalanceAnalysis.h	: header file for generic external result object
StressbalanceSIAAnalysis.cpp
StressbalanceSIAAnalysis.h	: header file for generic external result object
StressbalanceVerticalAnalysis.cpp
StressbalanceVerticalAnalysis.h	: header file for generic external result object
ThermalAnalysis.cpp
ThermalAnalysis.h	: header file for generic external result object
UzawaPressureAnalysis.cpp
UzawaPressureAnalysis.h	: header file for generic external result object
► bamg
AdjacentTriangle.cpp
AdjacentTriangle.h
BamgGeom.cpp
BamgGeom.h
BamgMesh.cpp
BamgMesh.h
bamgobjects.h
BamgOpts.cpp
BamgOpts.h	Place holder for optimization function arguments
BamgQuadtree.cpp
BamgQuadtree.h
BamgVertex.cpp
BamgVertex.h
CrackedEdge.cpp
CrackedEdge.h
Curve.cpp
Curve.h
det.h
Edge.cpp
Edge.h
EigenMetric.cpp
GeomEdge.cpp
GeomEdge.h
Geometry.cpp
Geometry.h
GeomSubDomain.cpp
GeomSubDomain.h
GeomVertex.cpp
GeomVertex.h
include.h	Prototypes for include.h
ListofIntersectionTriangles.cpp
ListofIntersectionTriangles.h
macros.h
Mesh.cpp
Mesh.h
Metric.cpp
Metric.h
R2.h
SetOfE4.cpp
SetOfE4.h
SubDomain.cpp
SubDomain.h
Triangle.cpp
Triangle.h
typedefs.h
VertexOnEdge.cpp
VertexOnEdge.h
VertexOnGeom.cpp
VertexOnGeom.h
VertexOnVertex.cpp
VertexOnVertex.h
► classes
► Constraints
Constraint.h	Abstract class for Constraint object This class is a place holder for constraints It is derived from Object, so DataSets can contain them
Constraints.cpp
Constraints.h
SpcDynamic.cpp
SpcDynamic.h	: header file for spc object
SpcStatic.cpp
SpcStatic.h	: header file for spc object
SpcTransient.cpp
SpcTransient.h	: header file for spc object
► Dakota
IssmDirectApplicInterface.h
IssmParallelDirectApplicInterface.cpp
IssmParallelDirectApplicInterface.h	: derived ParallelDirectApplicInterface class declaration and implementation, taylored to ISSM. This class is registered into the interface database of Dakota, and is used to directly call ISSM cores from Dakota
► Elements
Element.cpp	: implementation of the Element object
Element.h	Abstract class for Element object This class is a place holder for the Tria and the Penta elements. It is derived from Element, so DataSets can contain them
ElementHook.cpp
ElementHook.h	Prototypes for ElementHook.h
Elements.cpp
Elements.h
Penta.cpp	: implementation of the Penta object
Penta.h	: header file for penta object
PentaRef.cpp	: implementation of the PentaRef object
PentaRef.h	Abstract class for handling Penta oriented routines, like nodal functions, strain rate generation, etc ..
Seg.cpp	: implementation of the Segment object
Seg.h	: header file for seg object
SegRef.cpp
SegRef.h	Abstract class for handling Seg oriented routines, like nodal functions, strain rate generation, etc ..
Tetra.cpp	: implementation of the Tetrament object
Tetra.h	: header file for seg object
TetraRef.cpp
TetraRef.h	Abstract class for handling Tetra oriented routines, like nodal functions, strain rate generation, etc ..
Tria.cpp	: implementation of the Tria object
Tria.h	: header file for tria object
TriaRef.cpp
TriaRef.h	Abstract class for handling Tria oriented routines, like nodal functions, strain rate generation, etc ..
► ExternalResults
ExternalResult.h	Abstract class for ExternalResult object
GenericExternalResult.h	: header file for generic external result object
Results.cpp
Results.h
► gauss
Gauss.h	: header file for vvirtual Gauss object
gaussobjects.h
GaussPenta.cpp
GaussPenta.h	: header file for node object
GaussSeg.cpp
GaussSeg.h	: header file for node object
GaussTetra.cpp
GaussTetra.h	: header file for node object
GaussTria.cpp
GaussTria.h	: header file for node object
► Inputs2
ArrayInput2.cpp
ArrayInput2.h
BoolInput2.cpp
BoolInput2.h
ControlInput2.cpp
ControlInput2.h	: header file for triavertexinput object
DatasetInput2.cpp
DatasetInput2.h	: header file for datasetinput object
DoubleInput2.cpp
DoubleInput2.h
ElementInput2.cpp
ElementInput2.h
Input2.h	Abstract class for Input2 object
Inputs2.cpp
Inputs2.h
IntInput2.cpp
IntInput2.h
PentaInput2.cpp
PentaInput2.h
SegInput2.cpp
SegInput2.h
TransientInput2.cpp
TransientInput2.h	: header file for transientinput object
TriaInput2.cpp
TriaInput2.h
► kriging
Covertree.cpp
Covertree.h
ExponentialVariogram.cpp
ExponentialVariogram.h	: header file for triavertexinput object
GaussianVariogram.cpp
GaussianVariogram.h	: header file for triavertexinput object
krigingobjects.h
Observation.cpp
Observation.h	: header file for Observation object
Observations.cpp
Observations.h
PowerVariogram.cpp
PowerVariogram.h	: header file for triavertexinput object
Quadtree.cpp
Quadtree.h
SphericalVariogram.cpp
SphericalVariogram.h	: header file for triavertexinput object
Variogram.h	Abstract class for Variogram object
► Loads
Channel.cpp
Channel.h	: header file for icefront object
Friction.cpp
Friction.h	: header file for friction object
Load.h	Abstract class for Load object This class is a place holder for the Icefront and the Penpair loads. It is derived from Load, so DataSets can contain them
Loads.cpp
Loads.h
Moulin.cpp
Moulin.h	: header file for pengrid object
Neumannflux.cpp
Neumannflux.h	: header file for icefront object
Numericalflux.cpp
Numericalflux.h	: header file for icefront object
Pengrid.cpp
Pengrid.h	: header file for pengrid object
Penpair.cpp
Penpair.h	: header file for penpair object
Riftfront.cpp	: implementation of the Riftfront object
Riftfront.h	: header file for riftfront object
► Materials
Material.h	Abstract class for Material object
Materials.cpp
Materials.h
Matestar.cpp
Matestar.h	: header file for matice object
Matice.cpp
Matice.h	: header file for matice object
Matlitho.cpp
Matlitho.h	: header file for matlitho object
► matrix
ElementMatrix.cpp	: implementation of the ElementMatrix object, used to plug values from element into global stiffness matrix
ElementMatrix.h	Container for information needed to plug element matrix generated by elements into the Kff and Kfs global matrices. This object will hold the element matrix on the g-set, the local as well as global dof lists in the f and s sets
ElementVector.cpp	: implementation of the ElementVector object, used to plug values from element into global load
ElementVector.h	Container for information needed to plug element vector generated by elements into the pf global load vector. This object will hold the element vector on the g-set, the local as well as global dof lists in the f set
matrixobjects.h
► Options
GenericOption.h	: header file for generic option object
Option.h	: header file for option abstract object
Options.cpp
Options.h
OptionUtilities.cpp	: implementation of the options utilities
OptionUtilities.h	: header file for option object utilities
► Params
BoolParam.cpp
BoolParam.h	: header file for triavertexinput object
DataSetParam.cpp
DataSetParam.h	: header file for triavertexinput object
DoubleMatArrayParam.cpp
DoubleMatArrayParam.h	: header file for object holding an array of serial matrices
DoubleMatParam.cpp
DoubleMatParam.h	: header file for triavertexinput object
DoubleParam.cpp
DoubleParam.h	: header file for triavertexinput object
DoubleTransientMatParam.cpp
DoubleTransientMatParam.h	: header file for DoubleTransientMatParam object
DoubleVecParam.cpp
DoubleVecParam.h	: header file for triavertexinput object
FileParam.cpp
FileParam.h	: header file for triavertexinput object
GenericParam.h
IntMatParam.cpp
IntMatParam.h	: header file for triavertexinput object
IntParam.cpp
IntParam.h	: header file for triavertexinput object
IntVecParam.cpp
IntVecParam.h	: header file for triavertexinput object
MatrixParam.cpp
MatrixParam.h	: header file for MatrixParam object
Param.h	Abstract class for Param object
Parameters.cpp
Parameters.h
StringArrayParam.cpp
StringArrayParam.h	: header file for triavertexinput object
StringParam.cpp
StringParam.h	: header file for triavertexinput object
TransientArrayParam.cpp
TransientArrayParam.h	: header file for triavertexinput object
TransientParam.cpp
TransientParam.h	: header file for triavertexinput object
VectorParam.cpp
VectorParam.h	: header file for triavertexinput object
AdaptiveMeshRefinement.cpp
AdaptiveMeshRefinement.h
AmrBamg.cpp	: implementation of the adaptive mesh refinement tool based on bamg
AmrBamg.h
Cfdragcoeffabsgrad.cpp	: Cfdragcoeffabsgrad Object
Cfdragcoeffabsgrad.h	: header file for Cfdragcoeffabsgrad object
Cfsurfacelogvel.cpp	: Cfsurfacelogvel Object
Cfsurfacelogvel.h	: header file for Cfsurfacelogvel object
Cfsurfacesquare.cpp	: Cfsurfacesquare Object
Cfsurfacesquare.h	: header file for Cfsurfacesquare object
classes.h
Contour.h	: header file for Contour object
Contours.cpp
Contours.h
Definition.h
DependentObject.cpp
DependentObject.h	Prototype for DependentObject.h
FemModel.cpp	: implementation of the FemModel object
FemModel.h
GiaDeflectionCoreArgs.h	Place holder for arguments to the GiaDeflectionCoreArgs routine
Hook.cpp	: implementation of the Hook object: see Hook.h for more explanations
Hook.h	: header file for hook object. A hook is a class that can store the id, offset, and object corresponding to this id and offset into a dataset. For example, an element has a hook to its nodes. A node has a hook to its vertex. The hook abstracts the need for having ids and offsets (necesarry for proper configuration of an object) in our objects
IoModel.cpp	File containing the methods that will help in processing the input data coming into ISSM, from Matlab, or through a binary file opened for reading
IoModel.h
Masscon.h	: header file for Masscon object
Massconaxpby.h	: header file for Massconaxpby object
Massfluxatgate.h	: header file for Massfluxatgate object
Misfit.cpp	: Misfit object
Misfit.h	: header file for Misfit object
Nodalvalue.cpp
Nodalvalue.h	: header file for Nodalvalue object
Node.cpp
Node.h	: header file for node object
Nodes.cpp
Nodes.h
Numberedcostfunction.cpp	: implementation for the Numberedcostfunction object
Numberedcostfunction.h	: header file for Numberedcostfunction object
Profiler.cpp
Profiler.h	: header file for node object
Radar.cpp	: Radar Object
Radar.h	: header file for Radar object
Regionaloutput.cpp	: implementation for the Regionaloutput object
Regionaloutput.h	: header file for Regionaloutput object
RiftStruct.cpp
RiftStruct.h	Place holder for Rift Structure in mex module
SealevelMasks.h	: header file for SealevelMask object
Segment.h	: header file for node object
Vertex.cpp
Vertex.h	: header file for vertex object
Vertices.cpp
Vertices.h
► cores
ad_core.cpp
adgradient_core.cpp
adjointbalancethickness2_core.cpp	Compute inverse method adjoint state
adjointbalancethickness_core.cpp	Compute inverse method adjoint state
AdjointCorePointerFromSolutionEnum.cpp	: return type of analyses, number of analyses and core solution function
adjointstressbalance_core.cpp	Compute inverse method adjoint state
balancethickness2_core.cpp
balancethickness_core.cpp	: core of the balancethickness solution
balancevelocity_core.cpp	: core of the balancevelocity solution
bedslope_core.cpp	: core of the slope solution
bmb_core.cpp	: core of the bmb (Basal mass balance) solution
control_core.cpp	: core of the control solution
controladm1qn3_core.cpp	: core of the control solution
controlm1qn3_core.cpp	: core of the control solution
controltao_core.cpp
controlvalidation_core.cpp	: core of the control solution
CorePointerFromSolutionEnum.cpp	: return type of analyses, number of analyses and core solution function
cores.h
dakota_core.cpp	: wrapper to the Dakota capabilities. qmu fires up Dakota, and registers a Dakota Plugin which will be in charge of running the solution sequences repeatedly, to garner statistics
damage_core.cpp
depthaverage_core.cpp	: core of the extrusion solution
dummy_core.cpp	: dummy core (nothing done)
esa_core.cpp	: core of the ESA solution
extrudefrombase_core.cpp	: core of the extrusion solution
extrudefromtop_core.cpp	: core of the extrusion solution
gia_core.cpp	: core of the GIA solution
hydrology_core.cpp	: core of the hydrology solution
levelsetfunctionslope_core.cpp	: core of the slope solution
love_core.cpp	: core of the LOVE numbers solution
masstransport_core.cpp	: core of the masstransport solution
movingfront_core.cpp
ProcessArguments.cpp	: process arguments
ResetBoundaryConditions.cpp	: change boundary conditions of a model, using a solution vector from another analysis
sealevelchange_core.cpp	: core of the sea-level change solution
smb_core.cpp	: core of the smb solution
steadystate_core.cpp	: core of the steadystate solution
stressbalance_core.cpp	: core of the stressbalance solution
surfaceslope_core.cpp	: core of the slope solution
thermal_core.cpp	: core of the thermal solution
transient_core.cpp
WrapperCorePointerFromSolutionEnum.cpp	: return type of analyses, number of analyses and core solution function
► datastructures
DataSet.cpp
DataSet.h
datastructures.h
Object.h
► kml
KML_Attribute.cpp	: implementation of the kml_attribute object
KML_Attribute.h	: header file for kml_attribute object
KML_ColorStyle.cpp	: implementation of the kml_colorstyle abstract object
KML_ColorStyle.h	: header file for kml_colorstyle abstract object
KML_Comment.cpp	: implementation of the kml_comment object
KML_Comment.h	: header file for kml_comment object
KML_Container.cpp	: implementation of the kml_container abstract object
KML_Container.h	: header file for kml_container abstract object
KML_Document.cpp	: implementation of the kml_document object
KML_Document.h	: header file for kml_document object
KML_Feature.cpp	: implementation of the kml_feature abstract object
KML_Feature.h	: header file for kml_feature abstract object
KML_File.cpp	: implementation of the kml_file object
KML_File.h	: header file for kml_file object
KML_Folder.cpp	: implementation of the kml_folder object
KML_Folder.h	: header file for kml_folder object
KML_Geometry.cpp	: implementation of the kml_geometry abstract object
KML_Geometry.h	: header file for kml_geometry abstract object
KML_GroundOverlay.cpp	: implementation of the kml_groundoverlay object
KML_GroundOverlay.h	: header file for kml_groundoverlay object
KML_Icon.cpp	: implementation of the kml_feature abstract object
KML_Icon.h	: header file for kml_icon object
KML_LatLonBox.cpp	: implementation of the kml_feature abstract object
KML_LatLonBox.h	: header file for kml_latlonbox object
KML_LinearRing.cpp	: implementation of the kml_linearring object
KML_LinearRing.h	: header file for kml_linearring object
KML_LineString.cpp	: implementation of the kml_linestring object
KML_LineString.h	: header file for kml_linestring object
KML_LineStyle.cpp	: implementation of the kml_linestyle object
KML_LineStyle.h	: header file for kml_linestyle object
KML_MultiGeometry.cpp	: implementation of the kml_multigeometry object
KML_MultiGeometry.h	: header file for kml_multigeometry object
KML_Object.cpp	: implementation of the kml_object abstract object
KML_Object.h	: header file for kml_object abstract object
KML_Overlay.cpp	: implementation of the kml_overlay abstract object
KML_Overlay.h	: header file for kml_overlay abstract object
KML_Placemark.cpp	: implementation of the kml_placemark object
KML_Placemark.h	: header file for kml_placemark object
KML_Point.cpp	: implementation of the kml_point object
KML_Point.h	: header file for kml_point object
KML_Polygon.cpp	: implementation of the kml_polygon object
KML_Polygon.h	: header file for kml_polygon object
KML_PolyStyle.cpp	: implementation of the kml_polystyle object
KML_PolyStyle.h	: header file for kml_polystyle object
KML_Style.cpp	: implementation of the kml_style object
KML_Style.h	: header file for kml_style object
KML_StyleSelector.cpp	: implementation of the kml_styleselector abstract object
KML_StyleSelector.h	: header file for kml_styleselector abstract object
KML_SubStyle.cpp	: implementation of the kml_substyle abstract object
KML_SubStyle.h	: header file for kml_substyle abstract object
KML_Unknown.cpp	: implementation of the kml_unknown object
KML_Unknown.h	: header file for kml_unknown object
KMLFileReadUtils.cpp
KMLFileReadUtils.h	: header file for kml file reading utilities
kmlobjects.h
► main
EnvironmentFinalize.cpp	: finalize Petsc, MPI, you name it
EnvironmentInit.cpp	: initialize Petsc, MPI, you name it
esmfbinders.cpp
globals.h
issm.cpp	: ISSM main program
issm.h	Prototype wrapper for issm.h
issm_dakota.cpp	: ISSM DAKOTA main program
issm_ocean.cpp	: ISSM OCEAN main program
issm_slr.cpp	: ISSM SLR main program
kriging.cpp	: kriging main parallel program
► modules
► AllocateSystemMatricesx
AllocateSystemMatricesx.cpp
AllocateSystemMatricesx.h
► AverageOntoPartitionx
AverageOntoPartitionx.cpp
AverageOntoPartitionx.h	Header file for averaging dakota responses onto a vertices partition
► BamgConvertMeshx
BamgConvertMeshx.cpp
BamgConvertMeshx.h	Header file for Bamg module
► BamgTriangulatex
BamgTriangulatex.cpp
BamgTriangulatex.h	Header file for Bamg module
► Bamgx
Bamgx.cpp
Bamgx.h	Header file for Bamg module
► Calvingx
Calvingx.cpp
Calvingx.h
► Chacox
chaco_seconds.cpp
Chacox.cpp
Chacox.h
input_parse.cpp	Needed by Chacox.cpp
user_params.cpp
► ConfigureObjectsx
ConfigureObjectsx.cpp
ConfigureObjectsx.h	Header file for degree of freedoms distribution routines
► ConstraintsStatex
ConstraintsStateLocal.h	Local header files
ConstraintsStatex.cpp
ConstraintsStatex.h	Header file for penalty constraints module
RiftConstraintsState.cpp	: manage penalties for rifts
► ContourToMeshx
ContourToMeshx.cpp
ContourToMeshx.h
ContourToMeshxt.cpp	"thread" core code for interpolating values from a structured grid
► ContourToNodesx
ContourToNodesx.cpp
ContourToNodesx.h
► ControlInputSetGradientx
ControlInputSetGradientx.cpp
ControlInputSetGradientx.h
► CoordinateSystemTransformx
CoordinateSystemTransformx.cpp
CoordinateSystemTransformx.h
► CreateJacobianMatrixx
CreateJacobianMatrixx.cpp
CreateJacobianMatrixx.h
► CreateNodalConstraintsx
CreateNodalConstraintsx.cpp
CreateNodalConstraintsx.h
► Damagex
Damagex.cpp
Damagex.h
► DistanceToMaskBoundaryx
DistanceToMaskBoundaryx.cpp
DistanceToMaskBoundaryx.h
DistanceToMaskBoundaryxt.cpp	"thread" core code
► DragCoefficientAbsGradientx
DragCoefficientAbsGradientx.cpp
DragCoefficientAbsGradientx.h	Header file for inverse methods misfit computation
► ElementConnectivityx
ElementConnectivityx.cpp
ElementConnectivityx.h	Header file for element connectivity computation
► Exp2Kmlx
Exp2Kmlx.cpp
Exp2Kmlx.h	Header file for exp to kml conversion routines
► ExpToLevelSetx
ExpToLevelSetx.cpp
ExpToLevelSetx.h
ExpToLevelSetxt.cpp	"thread" core code for figuring out level set value from a contour and a cloud of points
► FloatingiceMeltingRatePicox
FloatingiceMeltingRatePicox.cpp
FloatingiceMeltingRatePicox.h	Header file for Floatingice melting rate
► FloatingiceMeltingRatex
FloatingiceMeltingRatex.cpp
FloatingiceMeltingRatex.h	Header file for Floatingice melting rate
► FourierLoveCorex
FourierLoveCorex.cpp
FourierLoveCorex.h	Header file for ..
► FrontalForcingsx
FrontalForcingsx.cpp
FrontalForcingsx.h
► GeothermalFluxx
GeothermalFluxx.cpp
GeothermalFluxx.h	Header file for Geothermal flux
► GetSolutionFromInputsx
GetSolutionFromInputsx.cpp
GetSolutionFromInputsx.h	Header file for updating datasets from inputs
► GetVectorFromControlInputsx
GetVectorFromControlInputsx.cpp
GetVectorFromControlInputsx.h
► GetVectorFromInputsx
GetVectorFromInputsx.cpp
GetVectorFromInputsx.h
► GiaDeflectionCorex
GiaDeflectionCorex.cpp
GiaDeflectionCorex.h	Header file for ..
► Gradjx
Gradjx.cpp
Gradjx.h	Header file for inverse methods gradient computation
► GroundinglineMigrationx
GroundinglineMigrationx.cpp
GroundinglineMigrationx.h	Header file for Grounding Line Migration
► InputDepthAverageAtBasex
InputDepthAverageAtBasex.cpp
InputDepthAverageAtBasex.h	Header file for field extrusion
► InputDuplicatex
InputDuplicatex.cpp
InputDuplicatex.h	Header file for field extrusion
► InputExtrudex
InputExtrudex.cpp
InputExtrudex.h	Header file for field extrusion
► InputUpdateFromConstantx
InputUpdateFromConstantx.cpp
InputUpdateFromConstantx.h	Header file for updating datasets from inputs
► InputUpdateFromDakotax
InputUpdateFromDakotax.cpp
InputUpdateFromDakotax.h	Header file for updating datasets from inputs
► InputUpdateFromMatrixDakotax
InputUpdateFromMatrixDakotax.cpp
InputUpdateFromMatrixDakotax.h	Header file for updating datasets from inputs
► InputUpdateFromSolutionx
InputUpdateFromSolutionx.cpp
InputUpdateFromSolutionx.h	Header file for updating datasets from inputs
► InputUpdateFromVectorDakotax
InputUpdateFromVectorDakotax.cpp
InputUpdateFromVectorDakotax.h	Header file for updating datasets from inputs
► InputUpdateFromVectorx
InputUpdateFromVectorx.cpp
InputUpdateFromVectorx.h	Header file for updating datasets from inputs
► InterpFromGridToMeshx
InterpFromGridToMeshx.cpp	"c" core code for interpolating values from a structured grid
InterpFromGridToMeshx.h	: header file for Data interpolation routines
► InterpFromMesh2dx
InterpFromMesh2dx.cpp	"c" core code for interpolating values from a structured grid
InterpFromMesh2dx.h	: header file for Data interpolation routines
InterpFromMesh2dxt.cpp	Thread core for InterpFromMesh2dxt code
► InterpFromMeshToGridx
InterpFromMeshToGridx.cpp	"c" core code for interpolating values from a structured grid
InterpFromMeshToGridx.h	: header file for Data interpolation routines
► InterpFromMeshToMesh2dx
InterpFromMeshToMesh2dx.cpp
InterpFromMeshToMesh2dx.h	Header file for Bamg module
► InterpFromMeshToMesh3dx
InterpFromMeshToMesh3dx.cpp	"c" core code for interpolating values from a structured grid
InterpFromMeshToMesh3dx.h	: header file for Data interpolation routines
► IoModelToConstraintsx
IoModelToConstraintsx.cpp
IoModelToConstraintsx.h
► KillIcebergsx
KillIcebergsx.cpp
KillIcebergsx.h
► Kml2Expx
Kml2Expx.cpp
Kml2Expx.h	Header file for kml to exp conversion routines
► KMLFileReadx
KMLFileReadx.cpp
KMLFileReadx.h	Header file for kml mesh writer routines
► KMLMeshWritex
KMLMeshWritex.cpp
KMLMeshWritex.h	Header file for kml mesh writer routines
► KMLOverlayx
KMLOverlayx.cpp
KMLOverlayx.h	Header file for kml file overlay routines
► Krigingx
Krigingx.cpp
Krigingx.h
pKrigingx.cpp
► Mergesolutionfromftogx
Mergesolutionfromftogx.cpp
Mergesolutionfromftogx.h	Merge solution back from f set into g set
► MeshPartitionx
MeshPartitionx.h	Header file for partitioning module
► MeshProfileIntersectionx
MeshProfileIntersectionx.cpp
MeshProfileIntersectionx.h
► ModelProcessorx
► Autodiff
CreateParametersAutodiff.cpp	Driver for creating parameters dataset, for autodiff analysis
► Control
CreateParametersControl.cpp	Driver for creating parameters dataset, for control analysis
UpdateElementsAndMaterialsControl.cpp
► Dakota
CreateParametersDakota.cpp	General driver for creating parameters dataset
UpdateElementsAndMaterialsDakota.cpp
► Transient
UpdateElementsTransient.cpp
CreateEdges.cpp	: create edges from 2d mesh
CreateElementsVerticesAndMaterials.cpp
CreateFaces.cpp	: create faces from 2d mesh
CreateNodes.cpp
CreateNumberNodeToElementConnectivity.cpp	: create connectivity table
CreateOutputDefinitions.cpp
CreateParameters.cpp	General driver for creating parameters dataset
CreateSingleNodeToElementConnectivity.cpp	: create connectivity table
EdgesPartitioning.cpp	: partition elements and nodes and vertices
ElementsAndVerticesPartitioning.cpp	: partition elements and nodes and vertices
FacesPartitioning.cpp	: partition elements and nodes and vertices
ModelProcessorx.cpp
ModelProcessorx.h
NodesPartitioning.cpp	: partition elements and nodes and vertices
► NodalValuex
NodalValuex.cpp
NodalValuex.h	Header file for NodalValuex
► NodeConnectivityx
NodeConnectivityx.cpp
NodeConnectivityx.h	Header file for node connectivity computation
► NodesDofx
NodesDofx.cpp
NodesDofx.h	Header file for degree of freedoms distribution routines
► OceanExchangeDatax
OceanExchangeDatax.cpp
OceanExchangeDatax.h	Header file for Exchange of ocean data
► OutputDefinitionsResponsex
OutputDefinitionsResponsex.cpp
OutputDefinitionsResponsex.h
► OutputResultsx
OutputResultsx.cpp	: go through our finite elements, and see what results they have stored within. Then output them into serialized patch arrays, and dump to disk
OutputResultsx.h	Header file for outputing results
► ParseToolkitsOptionsx
ParseToolkitsOptionsx.cpp
ParseToolkitsOptionsx.h	Header file for parsing petsc options file
► PointCloudFindNeighborsx
PointCloudFindNeighborsx.cpp
PointCloudFindNeighborsx.h
PointCloudFindNeighborsxt.cpp
► ProcessRiftsx
ProcessRiftsx.cpp
ProcessRiftsx.h	Header file for ProcessRifts module
► PropagateFlagsFromConnectivityx
PropagateFlagsFromConnectivityx.cpp
PropagateFlagsFromConnectivityx.h
► Reduceloadx
Reduceloadx.cpp
Reduceloadx.h	Reduce loads (wring out boundary conditions)
► Reducevectorgtofx
Reducevectorgtofx.cpp
Reducevectorgtofx.h	Reduce petsc vector from g set to f set (free dofs), using the nodeset partitioning vectors
► ResetConstraintsx
ResetConstraintsx.cpp
ResetConstraintsx.h	Header file for penalty constraints module
► ResetFSBasalBoundaryConditionx
ResetFSBasalBoundaryConditionx.cpp
ResetFSBasalBoundaryConditionx.h	Header file for reset coordinate system module
► RheologyBAbsGradientx
RheologyBAbsGradientx.cpp
RheologyBAbsGradientx.h	Header file for inverse methods misfit computation
► RheologyBbarAbsGradientx
RheologyBbarAbsGradientx.cpp
RheologyBbarAbsGradientx.h	Header file for inverse methods misfit computation
► Scotchx
Scotchx.cpp
Scotchx.h
► SetActiveNodesLSMx
SetActiveNodesLSMx.cpp
SetActiveNodesLSMx.h	Header file for updating single point constraints for next time step
► SetControlInputsFromVectorx
SetControlInputsFromVectorx.cpp
SetControlInputsFromVectorx.h
► Shp2Kmlx
Shp2Kmlx.cpp
Shp2Kmlx.h	Header file for shp to kml conversion routines
► Solverx
Solverx.cpp
Solverx.h	Solver
► SpcNodesx
SpcNodesx.cpp
SpcNodesx.h	Header file for node single point constraints
► SurfaceAbsVelMisfitx
SurfaceAbsVelMisfitx.cpp
SurfaceAbsVelMisfitx.h	Header file for inverse methods misfit computation
► SurfaceAreax
SurfaceAreax.cpp
SurfaceAreax.h	Header file for ..
► SurfaceAverageVelMisfitx
SurfaceAverageVelMisfitx.cpp
SurfaceAverageVelMisfitx.h	Header file for inverse methods misfit computation
► SurfaceLogVelMisfitx
SurfaceLogVelMisfitx.cpp
SurfaceLogVelMisfitx.h	Header file for inverse methods misfit computation
► SurfaceLogVxVyMisfitx
SurfaceLogVxVyMisfitx.cpp
SurfaceLogVxVyMisfitx.h	Header file for inverse methods misfit computation
► SurfaceMassBalancex
Gembx.cpp
SurfaceMassBalancex.cpp
SurfaceMassBalancex.h	Header file for SMB
► SurfaceRelVelMisfitx
SurfaceRelVelMisfitx.cpp
SurfaceRelVelMisfitx.h	Header file for inverse methods misfit computation
► SystemMatricesx
SystemMatricesx.cpp
SystemMatricesx.h
► ThicknessAbsMisfitx
ThicknessAbsMisfitx.cpp
ThicknessAbsMisfitx.h	Header file for inverse methods misfit computation
► ThicknessAcrossGradientx
ThicknessAcrossGradientx.cpp
ThicknessAcrossGradientx.h	Header file for inverse methods misfit computation
► ThicknessAlongGradientx
ThicknessAlongGradientx.cpp
ThicknessAlongGradientx.h	Header file for inverse methods misfit computation
► Trianglex
Trianglex.cpp
Trianglex.h	Header file for Trianglex module
► UpdateDynamicConstraintsx
UpdateDynamicConstraintsx.cpp
UpdateDynamicConstraintsx.h	Header file for updating single point constraints for next time step
► VertexCoordinatesx
VertexCoordinatesx.cpp
VertexCoordinatesx.h
modules.h	Header file for all the ISSM modules
► shared
► Bamg
Abs.h
BigPrimeNumber.cpp
BigPrimeNumber.h
Exchange.h
extrema.h
HeapSort.h
OppositeAngle.h
shared.h
► Elements
Arrhenius.cpp
BuddJacka.cpp
ComputeD18OTemperaturePrecipitationFromPD.cpp
ComputeDelta18oTemperaturePrecipitation.cpp
ComputeMungsmTemperaturePrecipitation.cpp
Cuffey.cpp
CuffeyTemperate.cpp
DrainageFunctionWaterfraction.cpp	: drain excess water fraction
elements.h	Prototypes for elements.h
EstarComponents.cpp
LliboutryDuval.cpp
NyeCO2.cpp
NyeH2O.cpp
Paterson.cpp
PddSurfaceMassBalance.cpp
PddSurfaceMassBalanceSicopolis.cpp
PrintArrays.cpp
StressIntensityIntegralWeight.cpp
► Enum
Enum.h
EnumDefinitions.h
EnumToStringx.cpp
StringToEnumx.cpp
► Exceptions
Exceptions.cpp
exceptions.h	: two types of exceptions are handled for now. Errors, and warnings. Those exceptions are trapped provided the matlab modules are started using MODULEBOOT, and ended using MODULEEND. These are macros hiding try, catch statements. This header file defines our own exceptions
► Exp
exp.cpp
exp.h
► FSanalyticals
fsanalyticals.cpp
fsanalyticals.h
► io
► Comm
IssmComm.cpp	File containing the methods for IssmComm.h
IssmComm.h
► Disk
diskio.h
pfclose.cpp	Fclose wrapper for parallel solution
pfopen.cpp	Fopen wrapper for parallel solution
WriteLockFile.cpp
► Marshalling
IoCodeConversions.cpp
IoCodeConversions.h
Marshalling.h
► Print
Print.h
PrintfFunction.cpp
io.h
► LatLong
latlong.h	Prototypes for latlong.h
Ll2xyx.cpp
Xy2llx.cpp
► Matrix
matrix.h	Prototypes for matrix.h
MatrixUtils.cpp
► MemOps
MemOps.cpp
MemOps.h
► Numerics
BrentSearch.cpp	Optimization algorithm
constants.h	Prototypes for constants.h
cross.cpp	Cross product for 2 vectors
cubic.cpp
extrema.cpp	Min and max functions
GaussPoints.cpp
GaussPoints.h
isnan.cpp
isnan.h
legendre.cpp	Compute legendre polynomial at specific x. This is inspired from the p_polynomial_value package, written by John Burkardt (see below for full documentation). Here, we apply the function differently: we assume previous two evaluations are provided, and we compute the level n evaluation:
NewtonSolveDnorm.cpp
numerics.h	Prototypes for numerics.h
ODE1.cpp
OptPars.h	Place holder for optimization parameters
recast.h
types.h	Prototypes for types.h
Verbosity.cpp
Verbosity.h
XZvectorsToCoordinateSystem.cpp
► Sorting
binary_search.cpp	Binary search on an integer array, that is already sorted
sorting.h	Prototypes for sorting.h
► String
ApiPrintf.cpp
DescriptorIndex.cpp
sharedstring.h	Prototypes for sharedstring.h
► Threads
issm_threads.h	Prototypes for issm_threads.h
LaunchThread.cpp	Launch thread in a generic way, covering single and multi-threaded cases This routine attempts to simplify management of multi-threading. When multi-threadeing is not requested (serial run), LaunchThread will just call the function (provided in argument list), nothing fancy there. If multi-threading is requested, LaunchThread will launch the function on multiple threads (num_threads of them), and provide these functions with the local data they need (folded in the "gate" structure) + the thread id + the number of threads All this info is collected in the pthread_handle structure
PartitionRange.cpp	: return i0,i1, range of local thread
► Triangle
AssociateSegmentToElement.cpp	For each segment, look for the corresponding element
GridInsideHole.cpp
OrderSegments.cpp
SplitMeshForRifts.cpp
triangle.h
TriangleUtils.cpp
shared.h
► solutionsequences
convergence.cpp	: figure out if convergence has been reached
solutionsequence_adjoint_linear.cpp	: numerical core of linear solutions
solutionsequence_fct.cpp	: numerical core of flux corrected transport solution
solutionsequence_glads_nonlinear.cpp
solutionsequence_hydro_nonlinear.cpp	: core of the hydro solution
solutionsequence_la.cpp	: numerical core of la solutions
solutionsequence_la_theta.cpp	: numerical core of la_theta solutions
solutionsequence_linear.cpp	: numerical core of linear solutions
solutionsequence_newton.cpp
solutionsequence_nonlinear.cpp	: core of a non-linear solution, using fixed-point method
solutionsequence_schurcg.cpp	: numerical core of
solutionsequence_shakti_nonlinear.cpp
solutionsequence_stokescoupling_nonlinear.cpp
solutionsequence_thermal_nonlinear.cpp	: core of the thermal solution
solutionsequences.h
► toolkits
► adolc
AdolcEdf.h
adolcincludes.h
► codipack
ampi_interface.cpp
CoDiPackGlobal.h
codipackincludes.h
► gsl
DenseGslSolve.cpp	: solve dense matrix system with GSL library
gslincludes.h
► issm
Bucket.h	: header file for Bucket object
IssmAbsMat.h	Main abstract class for the ISSM matrices. This abstract class defines the pure virtual functions that each of its descendants need to implement, such as contructors, destructors, as well as matrix specific routines, such as SetValue, Assemple, MatMult, etc ... Descendants include among others: IssmDenseMat and IssmMpiDenseMat
IssmAbsVec.h	Main abstract class for the ISSM vectors. This abstract class defines the pure virtual functions that each of its descendants need to implement, such as contructors, destructors, as well as matrix specific routines, such as SetValue, Assemple, VecMult, etc ... Descendants include among others: IssmSeqVec and IssmMpiVec
IssmDenseMat.h	Implementation of an ISSM matrix which run serially (1 cpu only), which is made of a fully dense matrix. Internally, this dense matrix is just a linear buffer of type doubletype. This object needs to answer the API defined by the virtual functions in IssmAbsMat, and the contructors required by IssmMat (see IssmMat.h)
IssmMat.h	Main Matrix class for the Issm toolkit
IssmMpiDenseMat.h	Implementation of parallel dense ISSM matrix. Internally, the parallel dense matrix is split in rows across each cpu. Each matrix (representing a subset of rows) on each cpu is fully dense, and is represented by a linear buffer of type doubletype. This object needs to answer the API defined by the virtual functions in IssmAbsMat, and the contructors required by IssmMat (see IssmMat.h)
IssmMpiSparseMat.h	Implementation of parallel sparse ISSM matrix. Internally, the parallel sparse matrix is split in rows across each cpu. Locally, on each cpu, the local matrix is represented by a vector of sparse rows. This object needs to answer the API defined by the virtual functions in IssmAbsMat, and the contructors required by IssmMat (see IssmMat.h)
IssmMpiVec.h	Implementation of parallel dense ISSM vector. Internally, the parallel dense vector is split in rows across each cpu. Each vector (representing a subset of rows) on each cpu is fully dense, and is represented by a linear buffer of type doubletype. This object needs to answer the API defined by the virtual functions in IssmAbsVec, and the contructors required by IssmVec (see IssmVec.h)
IssmSeqVec.h	Implementation of an ISSM vector which run serially (1 cpu only), which is made of a fully dense vector. Internally, this dense vector is just a linear buffer of type doubletype. This object needs to answer the API defined by the virtual functions in IssmAbsVec, and the contructors required by IssmVec (see IssmVec.h)
IssmSolver.cpp
IssmSolver.h	Main hook up from Solver toolkit object to the ISSM toolkit
issmtoolkit.h
IssmToolkitUtils.cpp	Utilities used throughout our ISSM toolkit
IssmToolkitUtils.h	Routines used throughout the ISSM toolkit
IssmVec.h	Main Vector class for the Issm toolkit
SparseRow.h
► metis
► patches
METIS_PartMeshNodalPatch.cpp
metispatches.h
metisincludes.h
► mpi
► commops
commops.h
DetermineGlobalSize.cpp
DetermineLocalSize.cpp
DetermineRowRankFromLocalSize.cpp
GetOwnershipBoundariesFromRange.cpp	From a local range on each cpu, we determine what lower row and upper row from a matrix a cpu owns
issmmpi.cpp
issmmpi.h
► mumps
MpiDenseMumpsSolve.cpp	: solve dense matrix system with MUMPS
mumpsincludes.h
MumpsSolve.cpp	: solve dense matrix system with MUMPS
► objects
Matrix.h	Wrapper to matrix objects. The goal is to control which API (PETSc,Scalpack, Plapack?) implements our underlying matrix format
Solver.h
toolkitobjects.h	Wrappers to toolkits
Vector.h	Wrapper to vector objects. The goal is to control which API (PETSc,Scalpack, Plapack?) implements our underlying vector format
► petsc
► objects
PetscMat.cpp	: implementation of the PetscMat object
PetscMat.h	Wrapper to our own PetscMat object, which is needed to add AD capabilities (using ADOLC) to a C-coded Petsc API. We are just wrapping the Petsc objects into C++ equivalent, so that later, we can map all of the Petsc routines into Adolc equivalents
petscobjects.h
PetscSolver.cpp
PetscSolver.h
PetscVec.cpp	: implementation of the PetscVec object
PetscVec.h	Wrapper to our own PetscVec object, which is needed to add AD capabilities (using ADOLC) to a C-coded Petsc API. We are just wrapping the Petsc objects into C++ equivalent, so that later, we can map all of the Petsc routines into Adolc equivalents
► patches
ISSMToPetscInsertMode.cpp
ISSMToPetscMatrixType.cpp
ISSMToPetscNormMode.cpp
KSPFree.cpp	Wrapper to KSPDestroy
MatFree.cpp	Wrapper to MatDestroy
MatMultPatch.cpp
MatToSerial.cpp	Gather a Petsc Mat matrix onto cpu 0
NewMat.cpp	Create matrix using the Petsc library
NewVec.cpp	: create distributed Petsc vector
PetscOptionsDetermineSolverType.cpp
petscpatches.h
SolverEnum.h	Prototypes for SolverEnum.h
VecFree.cpp	Wrapper to VecDestroy
VecToMPISerial.cpp	Gather a Petsc Vector spread across the cluster, onto node 0, and then broadcast to all nodes
petscincludes.h
► triangle
triangleincludes.h
ToolkitOptions.cpp	File containing the methods for ToolkitOptions.h
ToolkitOptions.h
toolkits.h
toolkitsenums.h
dox
▼ mobile
► native
Main.cpp
▼ wrappers
► BamgConvertMesh
BamgConvertMesh.cpp
BamgConvertMesh.h	: prototype for Data Interpolation mex module
► BamgMesher
BamgMesher.cpp
BamgMesher.h
► BamgTriangulate
BamgTriangulate.cpp
BamgTriangulate.h	: prototype for Data Interpolation mex module
► Chaco
Chaco.cpp
Chaco.h	Header file for Chaco module
► ContourToMesh
ContourToMesh.cpp
ContourToMesh.h
► ContourToNodes
ContourToNodes.cpp
ContourToNodes.h
► CoordTransform
CoordTransform.cpp
CoordTransform.h
► DistanceToMaskBoundary
DistanceToMaskBoundary.cpp
DistanceToMaskBoundary.h
► ElementConnectivity
ElementConnectivity.cpp
ElementConnectivity.h
► ExpSimplify
ExpSimplify.cpp
ExpSimplify.h	: prototype for exp to kml file conversion mex module
► ExpToLevelSet
ExpToLevelSet.cpp
ExpToLevelSet.h
► include
issm-binding.h
► InterpFromGridToMesh
InterpFromGridToMesh.cpp
InterpFromGridToMesh.h	: prototype for Data Interpolation mex module
► InterpFromMesh2d
InterpFromMesh2d.cpp
InterpFromMesh2d.h	: prototype for Data Interpolation mex module
► InterpFromMeshToGrid
InterpFromMeshToGrid.cpp
InterpFromMeshToGrid.h
► InterpFromMeshToMesh2d
InterpFromMeshToMesh2d.cpp
InterpFromMeshToMesh2d.h	: prototype for Data Interpolation mex module
► InterpFromMeshToMesh3d
InterpFromMeshToMesh3d.cpp
InterpFromMeshToMesh3d.h	: prototype for Data Interpolation mex module
► Issm
issm.cpp	: ISSM main program
► IssmConfig
IssmConfig.cpp
IssmConfig.h	Header file for IssmConfig module
► javascript
► include
javascriptincludes.h
wrapper_macros.h
► io
ApiPrintf.cpp
FetchJavascriptData.cpp
javascriptio.h
WriteJavascriptData.cpp
► Kriging
Kriging.cpp	"c" core code for Kriging
Kriging.h	: header file for Kriging
► M1qn3
M1qn3.cpp
M1qn3.h	: prototype for Data Interpolation mex module
► matlab
► include
matlabincludes.h
wrapper_macros.h
► io
ApiPrintf.cpp
CheckNumMatlabArguments.cpp	: check number of arguments and report an usage error message
FetchMatlabData.cpp
matlabio.h
WriteMatlabData.cpp
► MeshPartition
MeshPartition.cpp	: partition mesh according to number of areas, using Metis library
MeshPartition.h
► MeshProfileIntersection
MeshProfileIntersection.cpp	: takes a .exp file (made of several profiles), and figures out its intersection with a mesh
MeshProfileIntersection.h
► NodeConnectivity
NodeConnectivity.cpp
NodeConnectivity.h
► PointCloudFindNeighbors
PointCloudFindNeighbors.cpp
PointCloudFindNeighbors.h
► ProcessRifts
ProcessRifts.cpp	Split a mesh where a rift (or fault) is present
ProcessRifts.h
► PropagateFlagsFromConnectivity
PropagateFlagsFromConnectivity.cpp
PropagateFlagsFromConnectivity.h
► python
► include
pythonincludes.h
wrapper_macros.h
► io
ApiPrintf.cpp
CheckNumPythonArguments.cpp	: check number of arguments and report an usage error message
FetchPythonData.cpp
pythonio.h
WritePythonData.cpp
► Scotch
Scotch.cpp
Scotch.h	Header file for Scotch module
► ShpRead
ShpRead.cpp
ShpRead.h	: prototype for shp read mex module
► Triangle
Triangle.cpp
Triangle.h
bindings.h