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/*\file matlabio.h

 *\brief: I/O for ISSM in matlab mode

 */


#ifndef _MATLAB_IO_H_

#define _MATLAB_IO_H_


#ifdef HAVE_CONFIG_H

#include <config.h>

#else

#error "Cannot compile with HAVE_CONFIG_H symbol! run configure first!"

#endif


#include "../include/matlabincludes.h"

#include "../../../c/bamg/bamgobjects.h"

#include "../../../c/classes/classes.h"

#include "../../../c/toolkits/toolkits.h"

#include "../../../c/shared/shared.h"


void WriteData(mxArray** pdataref,IssmDenseMat<double>* matrix);

void WriteData(mxArray** pdataref,double* matrix, int M,int N);

void WriteData(mxArray** pdataref,int*    matrix, int M,int N);

void WriteData(mxArray** pdataref,IssmSeqVec<double>* vector);

void WriteData(mxArray** pdataref,double* vector, int M);

void WriteData(mxArray** pdataref,short* vector, int M);

void WriteData(mxArray** pdataref,int* vector, int M);

void WriteData(mxArray** pdataref,int integer);

void WriteData(mxArray** pdataref,bool boolean);

void WriteData(mxArray** pdataref,double scalar);

void WriteData(mxArray** pdataref,const char* string);

void WriteData(mxArray** pdataref);

void WriteData(mxArray** pdataref,BamgGeom* bamggeom);

void WriteData(mxArray** pdataref,BamgMesh* bamgmesh);

void WriteData(mxArray** pdataref,RiftStruct* riftstruct);

void WriteData(mxArray** pdataref,Contours* contours);


void FetchData(double** pmatrix,int* pM,int *pN,const mxArray* dataref);

void FetchData(int** pmatrix,int* pM,int *pN,const mxArray* dataref);

void FetchData(bool** pmatrix,int* pM,int *pN,const mxArray* dataref);

void FetchData(int** pvector,int* pM,const mxArray* dataref);

void FetchData(float** pvector,int* pM,const mxArray* dataref);

void FetchData(double** pvector,int* pM,const mxArray* dataref);

void FetchData(bool** pvector,int* pM,const mxArray* dataref);

void FetchData(char** pstring,const mxArray* dataref);

void FetchData(double* pscalar,const mxArray* dataref);

void FetchData(int* pinteger,const mxArray* dataref);

void FetchData(bool* pbool,const mxArray* dataref);

void FetchData(BamgGeom** bamggeom,const mxArray* dataref);

void FetchData(BamgMesh** bamgmesh,const mxArray* dataref);

void FetchData(BamgOpts** bamgopts,const mxArray* dataref);

void FetchData(Options** poptions,int istart, int nrhs,const mxArray** pdataref);

void FetchData(Contours** pcontours,const mxArray* dataref);

void FetchChacoData(int* pnvtxs,int** padjacency,int** pstart,float** pewgts,const mxArray* A_IN, const mxArray* EWGTS_IN);


Option* OptionParse(char* name, const mxArray* prhs[]);

GenericOption<double>*  OptionDoubleParse(char* name, const mxArray* prhs[]);

GenericOption<double*>* OptionDoubleArrayParse(char* name, const mxArray* prhs[]);

GenericOption<char*>*   OptionCharParse(char* name, const mxArray* prhs[]);


mxArray* mxGetAssignedField(const mxArray* pmxa_array,int number, const char* field);

void SetStructureField(mxArray* dataref,const char* fieldname,int fieldrows,int fieldcols,double* fieldpointer);

void SetStructureFieldi(mxArray* dataref,int i,const char* fieldname,int fieldrows,int fieldcols,double* fieldpointer);

void SetStructureFieldi(mxArray* dataref,int i,const char* fieldname,int fieldrows,int fieldcols,int*    fieldpointer);

void SetStructureFieldi(mxArray* dataref,int i,const char* fieldname,int field);

void SetStructureFieldi(mxArray* dataref,int i,const char* fieldname,double field);

void SetStructureFieldi(mxArray* dataref,int i,const char* fieldname,const char* string);

int CheckNumMatlabArguments(int nlhs,int NLHS, int nrhs,int NRHS, const char* THISFUNCTION, void (*function)( void ));


/*Matlab to double* routines: */

int MatlabMatrixToDoubleMatrix(double** pmatrix,int* pmatrix_rows,int* pmatrix_cols,const mxArray* mxmatrix);


/*Print*/

void ApiPrintf(const char* string);

#endif   /* _IO_H_ */