Changeset 13395

Timestamp:

09/19/12 09:32:34 (13 years ago)

Author:

Mathieu Morlighem

Message:

merged trunk-jpl and trunk for revision 13393

Location:

issm/trunk

Files:

• . (modified) (view diffs)
• Makefile.am (modified) (view diffs)
• bin (modified) (view diffs)
• bin/Makefile.am (deleted)
• configs/config-arm-linux.sh (modified) (view diffs)
• configs/config-discover.sh (modified) (view diffs)
• configs/config-greenplanet.sh (modified) (view diffs)
• configs/config-linux64-ad.sh (modified) (view diffs)
• configs/config-linux64-astrid-ad.sh (modified) (view diffs)
• configs/config-linux64-astrid-petsc3.3.sh (copied) (copied from issm/trunk-jpl/configs/config-linux64-astrid-petsc3.3.sh ) (view diffs)
• configs/config-linux64-astrid-petscdev.sh (modified) (view diffs)
• configs/config-linux64-astrid-python.sh (modified) (view diffs)
• configs/config-linux64-astrid.sh (modified) (view diffs)
• configs/config-macosx64-chris-bothapis.sh (copied) (copied from issm/trunk-jpl/configs/config-macosx64-chris-bothapis.sh ) (view diffs)
• configs/config-macosx64-chris-python.sh (copied) (copied from issm/trunk-jpl/configs/config-macosx64-chris-python.sh ) (view diffs)
• configs/config-macosx64-helene.sh (deleted)
• configs/config-macosx64-larour-ad.sh (modified) (view diffs)
• configs/config-macosx64-larour-python.sh (modified) (view diffs)
• configs/config-macosx64-larour.sh (modified) (view diffs)
• configs/config-macosx64-lion-helene.sh (copied) (copied from issm/trunk-jpl/configs/config-macosx64-lion-helene.sh ) (view diffs)
• configs/config-macosx64-nicole.sh (modified) (view diffs)
• configure.ac (modified) (view diffs)
• etc/environment.csh (modified) (view diffs)
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• etc/environment_variables.csh (deleted)
• etc/environment_variables.sh (deleted)
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• externalpackages/android/android_variables.sh (deleted)
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• externalpackages/lapack/configs/macosx64 (copied) (copied from issm/trunk-jpl/externalpackages/lapack/configs/macosx64 ) (view diffs)
• externalpackages/lapack/configs/macosx64/make.inc (copied) (copied from issm/trunk-jpl/externalpackages/lapack/configs/macosx64/make.inc ) (view diffs)
• externalpackages/lapack/install-linux64.sh (modified) (view diffs)
• externalpackages/lapack/install-macosx64.sh (copied) (copied from issm/trunk-jpl/externalpackages/lapack/install-macosx64.sh ) (view diffs)
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• externalpackages/matlab/install.sh (modified) (view diffs)
• externalpackages/matplotlib/install-linux64.sh (copied) (copied from issm/trunk-jpl/externalpackages/matplotlib/install-linux64.sh ) (view diffs)
• externalpackages/matplotlib/install-macosx64.sh (copied) (copied from issm/trunk-jpl/externalpackages/matplotlib/install-macosx64.sh ) (view diffs)
• externalpackages/matplotlib/install-osx.sh (deleted)
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• externalpackages/mercurial/install.sh (modified) (view diffs)
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• externalpackages/mpich2/install-1.3.1-linux64-berg.sh (copied) (copied from issm/trunk-jpl/externalpackages/mpich2/install-1.3.1-linux64-berg.sh ) (view diffs)
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• src/c/matlab/io/MatlabMatrixToPetscMat.cpp (copied) (copied from issm/trunk-jpl/src/c/matlab/io/MatlabMatrixToPetscMat.cpp ) (view diffs)
• src/c/matlab/io/MatlabMatrixToPetscMatrix.cpp (deleted)
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• src/c/matlab/io/MatlabVectorToPetscVec.cpp (copied) (copied from issm/trunk-jpl/src/c/matlab/io/MatlabVectorToPetscVec.cpp ) (view diffs)
• src/c/matlab/io/MatlabVectorToPetscVector.cpp (deleted)
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• src/c/modules/AutodiffDriversx/AutodiffDriversx.h (copied) (copied from issm/trunk-jpl/src/c/modules/AutodiffDriversx/AutodiffDriversx.h ) (view diffs)
• src/c/modules/AverageOntoPartitionx/AverageOntoPartitionx.cpp (modified) (view diffs)
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• src/c/modules/Delta18oParameterizationx/Delta18oParameterizationx.cpp (copied) (copied from issm/trunk-jpl/src/c/modules/Delta18oParameterizationx/Delta18oParameterizationx.cpp ) (view diffs)
• src/c/modules/Delta18oParameterizationx/Delta18oParameterizationx.h (copied) (copied from issm/trunk-jpl/src/c/modules/Delta18oParameterizationx/Delta18oParameterizationx.h ) (view diffs)
• src/c/modules/DragCoefficientAbsGradientx/DragCoefficientAbsGradientx.cpp (modified) (view diffs)
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• src/c/modules/MeshProfileIntersectionx/MeshSegmentsIntersection.cpp (modified) (view diffs)
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• src/c/modules/ModelProcessorx/Autodiff/CreateParametersAutodiff.cpp (copied) (copied from issm/trunk-jpl/src/c/modules/ModelProcessorx/Autodiff/CreateParametersAutodiff.cpp ) (view diffs)
• src/c/modules/ModelProcessorx/Balancethickness/CreateConstraintsBalancethickness.cpp (modified) (view diffs)
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• src/c/modules/SurfaceLogVelMisfitx/SurfaceLogVelMisfitx.h (modified) (view diffs)
• src/c/modules/SurfaceLogVxVyMisfitx/SurfaceLogVxVyMisfitx.cpp (modified) (view diffs)
• src/c/modules/SurfaceLogVxVyMisfitx/SurfaceLogVxVyMisfitx.h (modified) (view diffs)
• src/c/modules/SurfaceRelVelMisfitx/SurfaceRelVelMisfitx.cpp (modified) (view diffs)
• src/c/modules/SurfaceRelVelMisfitx/SurfaceRelVelMisfitx.h (modified) (view diffs)
• src/c/modules/SystemMatricesx/SystemMatricesx.cpp (modified) (view diffs)
• src/c/modules/SystemMatricesx/SystemMatricesx.h (modified) (view diffs)
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• src/c/modules/ThicknessAcrossGradientx (copied) (copied from issm/trunk-jpl/src/c/modules/ThicknessAcrossGradientx ) (view diffs)
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• src/c/modules/ThicknessAcrossGradientx/ThicknessAcrossGradientx.h (copied) (copied from issm/trunk-jpl/src/c/modules/ThicknessAcrossGradientx/ThicknessAcrossGradientx.h ) (view diffs)
• src/c/modules/ThicknessAlongGradientx (copied) (copied from issm/trunk-jpl/src/c/modules/ThicknessAlongGradientx ) (view diffs)
• src/c/modules/ThicknessAlongGradientx/ThicknessAlongGradientx.cpp (copied) (copied from issm/trunk-jpl/src/c/modules/ThicknessAlongGradientx/ThicknessAlongGradientx.cpp ) (view diffs)
• src/c/modules/ThicknessAlongGradientx/ThicknessAlongGradientx.h (copied) (copied from issm/trunk-jpl/src/c/modules/ThicknessAlongGradientx/ThicknessAlongGradientx.h ) (view diffs)
• src/c/modules/TimeAdaptx/TimeAdaptx.h (modified) (view diffs)
• src/c/modules/TotalSmbx (copied) (copied from issm/trunk-jpl/src/c/modules/TotalSmbx ) (view diffs)
• src/c/modules/TotalSmbx/TotalSmbx.cpp (copied) (copied from issm/trunk-jpl/src/c/modules/TotalSmbx/TotalSmbx.cpp ) (view diffs)
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• src/c/shared/Elements/CoordinateSystemTransform.cpp (modified) (view diffs)
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• src/c/solvers/solver_linear.cpp (modified) (view diffs)
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• src/c/toolkits/petsc/objects (copied) (copied from issm/trunk-jpl/src/c/toolkits/petsc/objects ) (view diffs)
• src/c/toolkits/petsc/objects/PetscMat.cpp (copied) (copied from issm/trunk-jpl/src/c/toolkits/petsc/objects/PetscMat.cpp ) (view diffs)
• src/c/toolkits/petsc/objects/PetscMat.h (copied) (copied from issm/trunk-jpl/src/c/toolkits/petsc/objects/PetscMat.h ) (view diffs)
• src/c/toolkits/petsc/objects/PetscVec.cpp (copied) (copied from issm/trunk-jpl/src/c/toolkits/petsc/objects/PetscVec.cpp ) (view diffs)
• src/c/toolkits/petsc/objects/PetscVec.h (copied) (copied from issm/trunk-jpl/src/c/toolkits/petsc/objects/PetscVec.h ) (view diffs)
• src/c/toolkits/petsc/objects/petscobjects.h (copied) (copied from issm/trunk-jpl/src/c/toolkits/petsc/objects/petscobjects.h ) (view diffs)
• src/c/toolkits/petsc/patches/ISSMToPetscInsertMode.cpp (modified) (view diffs)
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• src/m/enum/TemperatureSurfaceEnum.m (copied) (copied from issm/trunk-jpl/src/m/enum/TemperatureSurfaceEnum.m ) (view diffs)
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• src/m/enum/TotalSmbEnum.m (copied) (copied from issm/trunk-jpl/src/m/enum/TotalSmbEnum.m ) (view diffs)
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• src/m/mesh/NodeInElement.m (copied) (copied from issm/trunk-jpl/src/m/mesh/NodeInElement.m ) (view diffs)
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• src/m/mesh/argusmesh.m (copied) (copied from issm/trunk-jpl/src/m/mesh/argusmesh.m ) (view diffs)
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• src/m/mesh/planet (copied) (copied from issm/trunk-jpl/src/m/mesh/planet ) (view diffs)
• src/m/mesh/planet/mesh_refine_tri4.m (copied) (copied from issm/trunk-jpl/src/m/mesh/planet/mesh_refine_tri4.m ) (view diffs)
• src/m/mesh/planet/planetmesher.m (copied) (copied from issm/trunk-jpl/src/m/mesh/planet/planetmesher.m ) (view diffs)
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• src/m/mesh/planet/sphere_tri.m (copied) (copied from issm/trunk-jpl/src/m/mesh/planet/sphere_tri.m ) (view diffs)
• src/m/mesh/rifts (copied) (copied from issm/trunk-jpl/src/m/mesh/rifts ) (view diffs)
• src/m/mesh/rifts/meshaddrifts.m (copied) (copied from issm/trunk-jpl/src/m/mesh/rifts/meshaddrifts.m ) (view diffs)
• src/m/mesh/rifts/meshplug.m (copied) (copied from issm/trunk-jpl/src/m/mesh/rifts/meshplug.m ) (view diffs)
• src/m/mesh/rifts/meshprocessoutsiderifts.m (copied) (copied from issm/trunk-jpl/src/m/mesh/rifts/meshprocessoutsiderifts.m ) (view diffs)
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• src/m/mesh/rifts/rifttipsonmesh.m (copied) (copied from issm/trunk-jpl/src/m/mesh/rifts/rifttipsonmesh.m ) (view diffs)
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• src/m/mesh/rifts/updateriftindexing.m (copied) (copied from issm/trunk-jpl/src/m/mesh/rifts/updateriftindexing.m ) (view diffs)
• src/m/mesh/roundmesh.m (copied) (copied from issm/trunk-jpl/src/m/mesh/roundmesh.m ) (view diffs)
• src/m/mesh/squaremesh.m (copied) (copied from issm/trunk-jpl/src/m/mesh/squaremesh.m ) (view diffs)
• src/m/mesh/triangle.m (copied) (copied from issm/trunk-jpl/src/m/mesh/triangle.m ) (view diffs)
• src/m/mesh/triangle.py (copied) (copied from issm/trunk-jpl/src/m/mesh/triangle.py ) (view diffs)
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• src/m/miscellaneous/BinRead.py (copied) (copied from issm/trunk-jpl/src/m/miscellaneous/BinRead.py ) (view diffs)
• src/m/miscellaneous/MatlabFuncs.py (copied) (copied from issm/trunk-jpl/src/m/miscellaneous/MatlabFuncs.py ) (view diffs)
• src/m/miscellaneous/fielddisplay.m (copied) (copied from issm/trunk-jpl/src/m/miscellaneous/fielddisplay.m ) (view diffs)
• src/m/miscellaneous/fielddisplay.py (copied) (copied from issm/trunk-jpl/src/m/miscellaneous/fielddisplay.py ) (view diffs)
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• src/m/miscellaneous/isnans.py (copied) (copied from issm/trunk-jpl/src/m/miscellaneous/isnans.py ) (view diffs)
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• src/m/miscellaneous/parallelrange.m (copied) (copied from issm/trunk-jpl/src/m/miscellaneous/parallelrange.m ) (view diffs)
• src/m/miscellaneous/parallelrange.py (copied) (copied from issm/trunk-jpl/src/m/miscellaneous/parallelrange.py ) (view diffs)
• src/m/miscellaneous/round_ice.m (copied) (copied from issm/trunk-jpl/src/m/miscellaneous/round_ice.m ) (view diffs)
• src/m/miscellaneous/structtoobj.m (copied) (copied from issm/trunk-jpl/src/m/miscellaneous/structtoobj.m ) (view diffs)
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• src/m/os/ispetsc.m (copied) (copied from issm/trunk-jpl/src/m/os/ispetsc.m ) (view diffs)
• src/m/os/ispetsc.py (copied) (copied from issm/trunk-jpl/src/m/os/ispetsc.py ) (view diffs)
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• src/m/os/issmscpin.m (copied) (copied from issm/trunk-jpl/src/m/os/issmscpin.m ) (view diffs)
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• src/m/os/issmssh.m (copied) (copied from issm/trunk-jpl/src/m/os/issmssh.m ) (view diffs)
• src/m/os/issmssh.py (copied) (copied from issm/trunk-jpl/src/m/os/issmssh.py ) (view diffs)
• src/m/os/jplsvn.m (copied) (copied from issm/trunk-jpl/src/m/os/jplsvn.m ) (view diffs)
• src/m/os/listfiles.m (copied) (copied from issm/trunk-jpl/src/m/os/listfiles.m ) (view diffs)
• src/m/os/listfilesparallel.m (copied) (copied from issm/trunk-jpl/src/m/os/listfilesparallel.m ) (view diffs)
• src/m/os/oshostname.m (copied) (copied from issm/trunk-jpl/src/m/os/oshostname.m ) (view diffs)
• src/m/os/petscversion.m (copied) (copied from issm/trunk-jpl/src/m/os/petscversion.m ) (view diffs)
• src/m/os/petscversion.py (copied) (copied from issm/trunk-jpl/src/m/os/petscversion.py ) (view diffs)
• src/m/os/recursivepath.m (copied) (copied from issm/trunk-jpl/src/m/os/recursivepath.m ) (view diffs)
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• src/m/parameterization/parameterize.m (copied) (copied from issm/trunk-jpl/src/m/parameterization/parameterize.m ) (view diffs)
• src/m/parameterization/parameterize.py (copied) (copied from issm/trunk-jpl/src/m/parameterization/parameterize.py ) (view diffs)
• src/m/parameterization/setflowequation.m (copied) (copied from issm/trunk-jpl/src/m/parameterization/setflowequation.m ) (view diffs)
• src/m/parameterization/setflowequation.py (copied) (copied from issm/trunk-jpl/src/m/parameterization/setflowequation.py ) (view diffs)
• src/m/parameterization/setmask.m (copied) (copied from issm/trunk-jpl/src/m/parameterization/setmask.m ) (view diffs)
• src/m/parameterization/setmask.py (copied) (copied from issm/trunk-jpl/src/m/parameterization/setmask.py ) (view diffs)
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• src/m/partition/adjacency.m (copied) (copied from issm/trunk-jpl/src/m/partition/adjacency.m ) (view diffs)
• src/m/partition/flagedges.m (copied) (copied from issm/trunk-jpl/src/m/partition/flagedges.m ) (view diffs)
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• src/m/plot/plot_edges.m (copied) (copied from issm/trunk-jpl/src/m/plot/plot_edges.m ) (view diffs)
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• src/m/plot/plot_manager.m (copied) (copied from issm/trunk-jpl/src/m/plot/plot_manager.m ) (view diffs)
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• src/m/plot/plot_qmustddev.m (copied) (copied from issm/trunk-jpl/src/m/plot/plot_qmustddev.m ) (view diffs)
• src/m/plot/plot_quiver.m (copied) (copied from issm/trunk-jpl/src/m/plot/plot_quiver.m ) (view diffs)
• src/m/plot/plot_quiver3.m (copied) (copied from issm/trunk-jpl/src/m/plot/plot_quiver3.m ) (view diffs)
• src/m/plot/plot_referential.m (copied) (copied from issm/trunk-jpl/src/m/plot/plot_referential.m ) (view diffs)
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• src/m/plot/plot_rifts.m (copied) (copied from issm/trunk-jpl/src/m/plot/plot_rifts.m ) (view diffs)
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• src/m/plot/plot_section.m (copied) (copied from issm/trunk-jpl/src/m/plot/plot_section.m ) (view diffs)
• src/m/plot/plot_segments.m (copied) (copied from issm/trunk-jpl/src/m/plot/plot_segments.m ) (view diffs)
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• src/m/plot/plot_tensor.m (copied) (copied from issm/trunk-jpl/src/m/plot/plot_tensor.m ) (view diffs)
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• src/m/plot/plot_unit.m (copied) (copied from issm/trunk-jpl/src/m/plot/plot_unit.m ) (view diffs)
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• src/m/plot/squarezoom.m (copied) (copied from issm/trunk-jpl/src/m/plot/squarezoom.m ) (view diffs)
• src/m/plot/subplotmodel.m (copied) (copied from issm/trunk-jpl/src/m/plot/subplotmodel.m ) (view diffs)
• src/m/print (copied) (copied from issm/trunk-jpl/src/m/print ) (view diffs)
• src/m/print/printmodel.m (copied) (copied from issm/trunk-jpl/src/m/print/printmodel.m ) (view diffs)
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• src/m/qmu/param_write.m (copied) (copied from issm/trunk-jpl/src/m/qmu/param_write.m ) (view diffs)
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• src/m/qmu/sensitivities.m (modified) (view diffs)
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• src/m/qmu/vlist_write.m (copied) (copied from issm/trunk-jpl/src/m/qmu/vlist_write.m ) (view diffs)
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