Changeset 12004

Timestamp:

04/16/12 16:06:52 (14 years ago)

Author:

cborstad

Message:

merged trunk-jpl into trunk-jpl-damage through revision 11990

Location:

issm/branches/trunk-jpl-damage

Files:

• . (modified) (view diffs)
• COPYING (deleted)
• ChangeLog (deleted)
• INSTALL (deleted)
• LICENSE (deleted)
• Makefile.am (modified) (view diffs)
• NEWS (deleted)
• ar-lib (deleted)
• aux-config (copied) (copied from issm/trunk-jpl/aux-config ) (view diffs)
• compile (deleted)
• configs/config-linux64-murdo-nopetsc.sh (copied) (copied from issm/trunk-jpl/configs/config-linux64-murdo-nopetsc.sh ) (view diffs)
• configs/config-macosx64-larour-ad.sh (modified) (view diffs)
• configs/config-macosx64-larour-nopetsc.sh (copied) (copied from issm/trunk-jpl/configs/config-macosx64-larour-nopetsc.sh ) (view diffs)
• configs/config-macosx64-larour-python.sh (copied) (copied from issm/trunk-jpl/configs/config-macosx64-larour-python.sh ) (view diffs)
• configs/config-macosx64-larour.sh (modified) (view diffs)
• configure.ac (modified) (view diffs)
• cron/configs/linux64_borstad_daily (deleted)
• cron/configs/linux64_borstad_nightly (deleted)
• cron/configs/linux64_borstad_ucitrunk (deleted)
• cron/configs/linux64_borstad_validation (deleted)
• cron/configs/linux64_daily (copied) (copied from issm/trunk-jpl/cron/configs/linux64_daily ) (view diffs)
• cron/configs/linux64_larour (deleted)
• cron/configs/linux64_morlighem_daily (deleted)
• cron/configs/linux64_morlighem_nightly (deleted)
• cron/configs/linux64_morlighem_validation (deleted)
• cron/configs/linux64_nightly (copied) (copied from issm/trunk-jpl/cron/configs/linux64_nightly ) (view diffs)
• cron/configs/linux64_schlegel_daily (deleted)
• cron/configs/linux64_schlegel_nightly (deleted)
• cron/configs/linux64_schlegel_ucitrunk (deleted)
• cron/configs/linux64_schlegel_validation (deleted)
• cron/configs/linux64_seroussi (deleted)
• cron/configs/linux64_seroussi_daily (deleted)
• cron/configs/linux64_seroussi_nightly (deleted)
• cron/configs/linux64_seroussi_ucitrunk (deleted)
• cron/configs/linux64_seroussi_validation (deleted)
• cron/configs/macosx32_seroussi (deleted)
• cron/configs/macosx64_borstad (deleted)
• cron/configs/macosx64_borstad_daily (deleted)
• cron/configs/macosx64_daily (copied) (copied from issm/trunk-jpl/cron/configs/macosx64_daily ) (view diffs)
• cron/configs/macosx64_larour (deleted)
• cron/configs/macosx64_larour_validation (deleted)
• cron/configs/macosx64_nightly (copied) (copied from issm/trunk-jpl/cron/configs/macosx64_nightly ) (view diffs)
• cron/configs/macosx64_schlegel (deleted)
• cron/configs/macosx64_schlegel_daily (deleted)
• cron/configs/win732 (copied) (copied from issm/trunk-jpl/cron/configs/win732 ) (view diffs)
• cron/configs/win732_larour (deleted)
• cron/configs/win764 (copied) (copied from issm/trunk-jpl/cron/configs/win764 ) (view diffs)
• cron/configs/win764_larour (deleted)
• cron/configs/winxp32 (copied) (copied from issm/trunk-jpl/cron/configs/winxp32 ) (view diffs)
• cron/configs/winxp32_larour (deleted)
• cron/nightlyrun.sh (modified) (view diffs)
• depcomp (deleted)
• etc/environment.sh (modified) (view diffs)
• etc/environment_variables.sh (modified) (view diffs)
• execution (modified) (view diffs)
• externalpackages/adolc/install.sh (modified) (view diffs)
• externalpackages/android-dev-dir (copied) (copied from issm/trunk-jpl/externalpackages/android-dev-dir ) (view diffs)
• externalpackages/android-emulators (deleted)
• externalpackages/android-ndk/install.sh (modified) (view diffs)
• externalpackages/android-sdk (modified) (view diffs)
• externalpackages/android-sdk/install.sh (modified) (view diffs)
• externalpackages/boost/boost_1_45_0.tar.gz (deleted)
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• externalpackages/boost/install.sh (modified) (view diffs)
• externalpackages/cm_and_cb_utilities (copied) (copied from issm/trunk-jpl/externalpackages/cm_and_cb_utilities ) (view diffs)
• externalpackages/export_fig/copyfig.m (copied) (copied from issm/trunk-jpl/externalpackages/export_fig/copyfig.m ) (view diffs)
• externalpackages/export_fig/eps2pdf.m (modified) (view diffs)
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• externalpackages/export_fig/isolate_axes.m (modified) (view diffs)
• externalpackages/export_fig/license.txt (modified) (view diffs)
• externalpackages/export_fig/print2array.m (modified) (view diffs)
• externalpackages/export_fig/print2eps.m (modified) (view diffs)
• externalpackages/geos5 (copied) (copied from issm/trunk-jpl/externalpackages/geos5 ) (view diffs)
• externalpackages/gmake (copied) (copied from issm/trunk-jpl/externalpackages/gmake ) (view diffs)
• externalpackages/gsl (copied) (copied from issm/trunk-jpl/externalpackages/gsl ) (view diffs)
• externalpackages/matlab/install-macosx-feras.sh (deleted)
• externalpackages/matlab/install.sh (modified) (view diffs)
• externalpackages/metis/configs/4.0/altix64/Makefile.in.patch (modified) (view diffs)
• externalpackages/metis/configs/4.0/cosmos/Makefile.in.patch (modified) (view diffs)
• externalpackages/metis/configs/4.0/greenplanet/Makefile.in.patch (modified) (view diffs)
• externalpackages/metis/configs/4.0/linux64/Makefile.in.patch (modified) (view diffs)
• externalpackages/metis/configs/4.0/macosx32/Makefile.in.patch (modified) (view diffs)
• externalpackages/metis/configs/4.0/macosx64/Makefile.in.patch (modified) (view diffs)
• externalpackages/metis/configs/4.0/pleiades/Makefile.in.patch (modified) (view diffs)
• externalpackages/metis/configs/4.0/win32/Makefile.in.patch (modified) (view diffs)
• externalpackages/metis/configs/4.0/win7/Makefile.in.patch (modified) (view diffs)
• externalpackages/metis/install-4.0-win7.sh (modified) (view diffs)
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• externalpackages/mitgcm/notes (copied) (copied from issm/trunk-jpl/externalpackages/mitgcm/notes ) (view diffs)
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• externalpackages/nose (copied) (copied from issm/trunk-jpl/externalpackages/nose ) (view diffs)
• externalpackages/packagemaker (copied) (copied from issm/trunk-jpl/externalpackages/packagemaker ) (view diffs)
• externalpackages/petsc (modified) (view diffs)
• externalpackages/petsc/configs (copied) (copied from issm/trunk-jpl/externalpackages/petsc/configs ) (view diffs)
• externalpackages/petsc/install-2.3.2-macosx64.sh (copied) (copied from issm/trunk-jpl/externalpackages/petsc/install-2.3.2-macosx64.sh ) (view diffs)
• externalpackages/petsc/install-3.1-win7.sh (modified) (view diffs)
• externalpackages/petsc/install-dev-linux64.sh (copied) (copied from issm/trunk-jpl/externalpackages/petsc/install-dev-linux64.sh ) (view diffs)
• externalpackages/python (modified) (view diffs)
• externalpackages/python/Python-2.7.2.tgz (copied) (copied from issm/trunk-jpl/externalpackages/python/Python-2.7.2.tgz ) (view diffs)
• externalpackages/python/install.sh (modified) (view diffs)
• externalpackages/python/patch (copied) (copied from issm/trunk-jpl/externalpackages/python/patch ) (view diffs)
• externalpackages/scipy (copied) (copied from issm/trunk-jpl/externalpackages/scipy ) (view diffs)
• externalpackages/triangle/configs/android (copied) (copied from issm/trunk-jpl/externalpackages/triangle/configs/android ) (view diffs)
• externalpackages/triangle/install-android-4.0.sh (copied) (copied from issm/trunk-jpl/externalpackages/triangle/install-android-4.0.sh ) (view diffs)
• externalpackages/triangle/install-macosx64.sh (modified) (view diffs)
• externalpackages/triangle/makefile (modified) (view diffs)
• externalpackages/triangle/triangle.c.patch.matlab (copied) (copied from issm/trunk-jpl/externalpackages/triangle/triangle.c.patch.matlab ) (view diffs)
• externalpackages/triangle/triangle.c.patch.python (copied) (copied from issm/trunk-jpl/externalpackages/triangle/triangle.c.patch.python ) (view diffs)
• externalpackages/triangle/triangle.h.patch (modified) (view diffs)
• externalpackages/vim/addons/vim/syntax/c.vim (modified) (view diffs)
• externalpackages/windows/InstallInstructions.txt (modified) (view diffs)
• externalpackages/windows/configs/intel-win7.sh (modified) (view diffs)
• externalpackages/windows/configs/sdk7.1.win7-32.sh (modified) (view diffs)
• externalpackages/windows/configs/sdk7.1.win7-64.sh (modified) (view diffs)
• externalpackages/windows/windows_environment.sh (modified) (view diffs)
• install-sh (deleted)
• m4/issm_options.m4 (modified) (view diffs)
• m4/matlab.m4 (deleted)
• missing (deleted)
• scripts/issmconfiguration.sh (copied) (copied from issm/trunk-jpl/scripts/issmconfiguration.sh ) (view diffs)
• scripts/report.sh (modified) (view diffs)
• src/android/HelloWorldProject (copied) (copied from issm/trunk-jpl/src/android/HelloWorldProject ) (view diffs)
• src/android/two-libs (copied) (copied from issm/trunk-jpl/src/android/two-libs ) (view diffs)
• src/c/Container/DataSet.cpp (modified) (view diffs)
• src/c/Container/Options.cpp (modified) (view diffs)
• src/c/Container/Options.h (modified) (view diffs)
• src/c/Container/Results.cpp (modified) (view diffs)
• src/c/Container/Results.h (modified) (view diffs)
• src/c/EnumDefinitions/EnumDefinitions.h (modified) (view diffs)
• src/c/Makefile.am (modified) (view diffs)
• src/c/include/globals.h (modified) (view diffs)
• src/c/include/macros.h (modified) (view diffs)
• src/c/include/types.h (modified) (view diffs)
• src/c/io/Matlab/CheckNumMatlabArguments.cpp (copied) (copied from issm/trunk-jpl/src/c/io/Matlab/CheckNumMatlabArguments.cpp ) (view diffs)
• src/c/io/Matlab/FetchMatlabData.cpp (modified) (view diffs)
• src/c/io/Matlab/OptionParse.cpp (modified) (view diffs)
• src/c/io/Matlab/PrintfFunction.cpp (copied) (copied from issm/trunk-jpl/src/c/io/Matlab/PrintfFunction.cpp ) (view diffs)
• src/c/io/Matlab/WriteMatlabData.cpp (modified) (view diffs)
• src/c/io/Matlab/matlabio.h (modified) (view diffs)
• src/c/io/Matlab/mxGetAssignedField.cpp (copied) (copied from issm/trunk-jpl/src/c/io/Matlab/mxGetAssignedField.cpp ) (view diffs)
• src/c/io/PrintfFunction.cpp (modified) (view diffs)
• src/c/io/Python (copied) (copied from issm/trunk-jpl/src/c/io/Python ) (view diffs)
• src/c/io/io.h (modified) (view diffs)
• src/c/modules/CostFunctionx/CostFunctionx.cpp (modified) (view diffs)
• src/c/modules/Dakotax/Dakotax.cpp (modified) (view diffs)
• src/c/modules/Dakotax/Dakotax.h (modified) (view diffs)
• src/c/modules/Dakotax/SpawnCore.cpp (modified) (view diffs)
• src/c/modules/Dakotax/SpawnCoreSerial.cpp (modified) (view diffs)
• src/c/modules/EnumToStringx/EnumToStringx.cpp (modified) (view diffs)
• src/c/modules/InputToResultx/InputToResultx.cpp (modified) (view diffs)
• src/c/modules/InputToResultx/InputToResultx.h (modified) (view diffs)
• src/c/modules/InterpFromGridToMeshx/InterpFromGridToMeshx.h (modified) (view diffs)
• src/c/modules/InterpFromMeshToGridx/InterpFromMeshToGridx.cpp (modified) (view diffs)
• src/c/modules/InterpFromMeshToMesh3dx/InterpFromMeshToMesh3dx.h (modified) (view diffs)
• src/c/modules/ModelProcessorx/CreateElementsVerticesAndMaterials.cpp (modified) (view diffs)
• src/c/modules/ModelProcessorx/CreateParameters.cpp (modified) (view diffs)
• src/c/modules/ModelProcessorx/Prognostic/UpdateElementsPrognostic.cpp (modified) (view diffs)
• src/c/modules/OutputResultsx/OutputResultsx.cpp (modified) (view diffs)
• src/c/modules/OutputResultsx/OutputResultsx.h (modified) (view diffs)
• src/c/modules/ParsePetscOptionsx/ParsePetscOptionsx.cpp (modified) (view diffs)
• src/c/modules/RequestedOutputsx/RequestedOutputsx.cpp (modified) (view diffs)
• src/c/modules/RequestedOutputsx/RequestedOutputsx.h (modified) (view diffs)
• src/c/modules/Solverx/Solverx.cpp (modified) (view diffs)
• src/c/modules/Solverx/Solverx.h (modified) (view diffs)
• src/c/modules/Solverx/SolverxGsl.cpp (copied) (copied from issm/trunk-jpl/src/c/modules/Solverx/SolverxGsl.cpp ) (view diffs)
• src/c/modules/StringToEnumx/StringToEnumx.cpp (modified) (view diffs)
• src/c/modules/TriMeshx (copied) (copied from issm/trunk-jpl/src/c/modules/TriMeshx ) (view diffs)
• src/c/modules/modules.h (modified) (view diffs)
• src/c/objects/Bamg/BamgGeom.cpp (modified) (view diffs)
• src/c/objects/Bamg/BamgGeom.h (modified) (view diffs)
• src/c/objects/Bamg/BamgMesh.cpp (modified) (view diffs)
• src/c/objects/Bamg/BamgMesh.h (modified) (view diffs)
• src/c/objects/Bamg/BamgOpts.cpp (modified) (view diffs)
• src/c/objects/Bamg/BamgOpts.h (modified) (view diffs)
• src/c/objects/Contour.cpp (modified) (view diffs)
• src/c/objects/Contour.h (modified) (view diffs)
• src/c/objects/Elements/Tria.cpp (modified) (view diffs)
• src/c/objects/ExternalResults/BoolExternalResult.cpp (modified) (view diffs)
• src/c/objects/ExternalResults/BoolExternalResult.h (modified) (view diffs)
• src/c/objects/ExternalResults/DoubleExternalResult.cpp (modified) (view diffs)
• src/c/objects/ExternalResults/DoubleExternalResult.h (modified) (view diffs)
• src/c/objects/ExternalResults/DoubleMatExternalResult.cpp (modified) (view diffs)
• src/c/objects/ExternalResults/DoubleMatExternalResult.h (modified) (view diffs)
• src/c/objects/ExternalResults/DoubleVecExternalResult.cpp (modified) (view diffs)
• src/c/objects/ExternalResults/DoubleVecExternalResult.h (modified) (view diffs)
• src/c/objects/ExternalResults/ExternalResult.h (modified) (view diffs)
• src/c/objects/ExternalResults/IntExternalResult.cpp (modified) (view diffs)
• src/c/objects/ExternalResults/IntExternalResult.h (modified) (view diffs)
• src/c/objects/ExternalResults/PetscVecExternalResult.cpp (modified) (view diffs)
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• src/c/objects/ExternalResults/StringExternalResult.cpp (modified) (view diffs)
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• src/c/toolkits/petsc/patches/MatInvert.cpp (modified) (view diffs)
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• src/py/classes/clusters (copied) (copied from issm/trunk-jpl/src/py/classes/clusters ) (view diffs)
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• src/py/classes/debug.py (copied) (copied from issm/trunk-jpl/src/py/classes/debug.py ) (view diffs)
• src/py/classes/diagnostic.py (copied) (copied from issm/trunk-jpl/src/py/classes/diagnostic.py ) (view diffs)
• src/py/classes/flaim.py (copied) (copied from issm/trunk-jpl/src/py/classes/flaim.py ) (view diffs)
• src/py/classes/flowequation.py (copied) (copied from issm/trunk-jpl/src/py/classes/flowequation.py ) (view diffs)
• src/py/classes/friction.py (copied) (copied from issm/trunk-jpl/src/py/classes/friction.py ) (view diffs)
• src/py/classes/geometry.py (copied) (copied from issm/trunk-jpl/src/py/classes/geometry.py ) (view diffs)
• src/py/classes/groundingline.py (copied) (copied from issm/trunk-jpl/src/py/classes/groundingline.py ) (view diffs)
• src/py/classes/hydrology.py (copied) (copied from issm/trunk-jpl/src/py/classes/hydrology.py ) (view diffs)
• src/py/classes/initialization.py (copied) (copied from issm/trunk-jpl/src/py/classes/initialization.py ) (view diffs)
• src/py/classes/inversion.py (copied) (copied from issm/trunk-jpl/src/py/classes/inversion.py ) (view diffs)
• src/py/classes/mask.py (copied) (copied from issm/trunk-jpl/src/py/classes/mask.py ) (view diffs)
• src/py/classes/materials.py (copied) (copied from issm/trunk-jpl/src/py/classes/materials.py ) (view diffs)
• src/py/classes/mesh.py (modified) (view diffs)
• src/py/classes/miscellaneous.py (copied) (copied from issm/trunk-jpl/src/py/classes/miscellaneous.py ) (view diffs)
• src/py/classes/model.py (modified) (view diffs)
• src/py/classes/pairoptions.py (copied) (copied from issm/trunk-jpl/src/py/classes/pairoptions.py ) (view diffs)
• src/py/classes/private.py (copied) (copied from issm/trunk-jpl/src/py/classes/private.py ) (view diffs)
• src/py/classes/prognostic.py (copied) (copied from issm/trunk-jpl/src/py/classes/prognostic.py ) (view diffs)
• src/py/classes/qmu.py (copied) (copied from issm/trunk-jpl/src/py/classes/qmu.py ) (view diffs)
• src/py/classes/radaroverlay.py (copied) (copied from issm/trunk-jpl/src/py/classes/radaroverlay.py ) (view diffs)
• src/py/classes/rifts.py (copied) (copied from issm/trunk-jpl/src/py/classes/rifts.py ) (view diffs)
• src/py/classes/settings.py (copied) (copied from issm/trunk-jpl/src/py/classes/settings.py ) (view diffs)
• src/py/classes/solver.py (copied) (copied from issm/trunk-jpl/src/py/classes/solver.py ) (view diffs)
• src/py/classes/steadystate.py (copied) (copied from issm/trunk-jpl/src/py/classes/steadystate.py ) (view diffs)
• src/py/classes/surfaceforcings.py (copied) (copied from issm/trunk-jpl/src/py/classes/surfaceforcings.py ) (view diffs)
• src/py/classes/thermal.py (copied) (copied from issm/trunk-jpl/src/py/classes/thermal.py ) (view diffs)
• src/py/classes/timestepping.py (copied) (copied from issm/trunk-jpl/src/py/classes/timestepping.py ) (view diffs)
• src/py/classes/transient.py (copied) (copied from issm/trunk-jpl/src/py/classes/transient.py ) (view diffs)
• src/py/classes/verbose.py (copied) (copied from issm/trunk-jpl/src/py/classes/verbose.py ) (view diffs)
• src/py/model (copied) (copied from issm/trunk-jpl/src/py/model ) (view diffs)
• src/py/model/display (modified) (view diffs)
• src/py/model/solvers (modified) (view diffs)
• src/py/modules (deleted)
• src/py/utils (copied) (copied from issm/trunk-jpl/src/py/utils ) (view diffs)
• src/py/utils/OS (modified) (view diffs)
• src/py/utils/Shell (modified) (view diffs)
• startup.m (modified) (view diffs)
• startup.py (modified) (view diffs)
• test/Archives/Archive263.mat (modified) (view diffs)
• test/NightlyRun (modified) (view diffs)
• test/NightlyRun/test101.py (copied) (copied from issm/trunk-jpl/test/NightlyRun/test101.py ) (view diffs)
• test/NightlyRun/test117.m (modified) (view diffs)
• test/NightlyRun/test118.m (modified) (view diffs)
• test/NightlyRun/test140.m (modified) (view diffs)
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• test/NightlyRun/test413.m (modified) (view diffs)
• test/NightlyRun/test414.m (modified) (view diffs)
• test/NightlyRun/test529.m (modified) (view diffs)
• test/NightlyRun/test530.m (modified) (view diffs)

issm/branches/trunk-jpl-damage/externalpackages/petsc

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+install-3.1
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+install-3.1
 src

issm/branches/trunk-jpl-damage/src/m/utils/Exp/manipulation

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issm/branches/trunk-jpl-damage/src/m/utils/Exp/readwrite

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issm/branches/trunk-jpl-damage/src/mex

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 .ignore.txt

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 .ignore.txt

issm/branches/trunk-jpl-damage/test/NightlyRun

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 *.tar.gz
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+__pycache__
 *.tar.gz
 *.bin 

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+install-3.1
 src

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+Makefile.in

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+Makefile.in

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+__pycache__
 Makefile
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+__pycache__
 *.tar.gz
 *.bin