Changeset 27035

Timestamp:

06/01/22 05:01:48 (3 years ago)

Author:

Mathieu Morlighem

Message:

merged trunk-jpl and trunk for revision 27033

Location:

issm/trunk

Files:

• . (modified) (view diffs)
• configure.ac (modified) (view diffs)
• etc/environment.csh (modified) (view diffs)
• etc/environment.sh (modified) (view diffs)
• examples/Inversion/Square.par (modified) (view diffs)
• examples/Inversion/runme.m (modified) (view diffs)
• examples/SlrGRACE/runme.m (modified) (view diffs)
• externalpackages/autotools/install-linux.sh (modified) (view diffs)
• externalpackages/autotools/install-mac.sh (modified) (view diffs)
• externalpackages/autotools/install-win.sh (modified) (view diffs)
• externalpackages/curl/install-7-linux-static.sh (modified) (view diffs)
• externalpackages/curl/install-7-mac-static.sh (modified) (view diffs)
• externalpackages/dakota/configs/6.2/BuildDakotaCustom.cmake.pfe.patch (modified) (view diffs)
• externalpackages/dakota/configs/6.2/CMakeLists.txt.pfe.patch (modified) (view diffs)
• externalpackages/dakota/configs/6.2/linux/cmake/BuildDakotaCustom.pleiades.cmake (copied) (copied from issm/trunk-jpl/externalpackages/dakota/configs/6.2/linux/cmake/BuildDakotaCustom.pleiades.cmake ) (view diffs)
• externalpackages/dakota/install-6.2-discover.sh (modified) (view diffs)
• externalpackages/dakota/install-6.2-pleiades.sh (modified) (view diffs)
• externalpackages/gmt/configs/6/static/linux/cmake/ConfigUser.static.cmake (modified) (view diffs)
• externalpackages/gmt/configs/6/static/mac/cmake/ConfigUser.static.cmake (modified) (view diffs)
• externalpackages/hdf5/install-1-parallel-with_tests.sh (copied) (copied from issm/trunk-jpl/externalpackages/hdf5/install-1-parallel-with_tests.sh ) (view diffs)
• externalpackages/hdf5/install-1-parallel.sh (copied) (copied from issm/trunk-jpl/externalpackages/hdf5/install-1-parallel.sh ) (view diffs)
• externalpackages/hdf5/install-1-with_tests.sh (copied) (copied from issm/trunk-jpl/externalpackages/hdf5/install-1-with_tests.sh ) (view diffs)
• externalpackages/hdf5/install-1.10-parallel-with_tests.sh (deleted)
• externalpackages/hdf5/install-1.10-parallel.sh (deleted)
• externalpackages/hdf5/install-1.10-with_tests.sh (deleted)
• externalpackages/hdf5/install-1.10.sh (deleted)
• externalpackages/hdf5/install-1.sh (copied) (copied from issm/trunk-jpl/externalpackages/hdf5/install-1.sh ) (view diffs)
• externalpackages/hdf5/install.sh (deleted)
• externalpackages/mplapack/install-1-linux.sh (copied) (copied from issm/trunk-jpl/externalpackages/mplapack/install-1-linux.sh ) (view diffs)
• externalpackages/petsc/install-3.14-discover.sh (modified) (view diffs)
• externalpackages/petsc/install-3.14-linux.sh (modified) (view diffs)
• externalpackages/petsc/install-3.14-mac-nohdf5.sh (copied) (copied from issm/trunk-jpl/externalpackages/petsc/install-3.14-mac-nohdf5.sh ) (view diffs)
• externalpackages/petsc/install-3.14-mac.sh (modified) (view diffs)
• externalpackages/petsc/install-3.14-pleiades.sh (copied) (copied from issm/trunk-jpl/externalpackages/petsc/install-3.14-pleiades.sh ) (view diffs)
• externalpackages/petsc/install-3.14-tetralith.sh (modified) (view diffs)
• externalpackages/petsc/install-3.14-win-msys2-mingw-msmpi.sh (modified) (view diffs)
• externalpackages/petsc/install-3.15-discovery.sh (modified) (view diffs)
• externalpackages/petsc/install-3.15-mac-arm.sh (deleted)
• externalpackages/petsc/install-3.15-pleiades.sh (modified) (view diffs)
• externalpackages/petsc/install-3.16-pleiades.sh (copied) (copied from issm/trunk-jpl/externalpackages/petsc/install-3.16-pleiades.sh ) (view diffs)
• externalpackages/petsc/install-3.17-mac-m1.sh (copied) (copied from issm/trunk-jpl/externalpackages/petsc/install-3.17-mac-m1.sh ) (view diffs)
• externalpackages/proj/install-6-static.sh (copied) (copied from issm/trunk-jpl/externalpackages/proj/install-6-static.sh ) (view diffs)
• externalpackages/proj/install-6.sh (modified) (view diffs)
• externalpackages/proj/install-8-static-with_tests.sh (modified) (view diffs)
• externalpackages/proj/install-8-static.sh (modified) (view diffs)
• externalpackages/proj/install-8-with_tests.sh (modified) (view diffs)
• externalpackages/proj/install-8.sh (modified) (view diffs)
• externalpackages/python/install-2-linux.sh (copied) (copied from issm/trunk-jpl/externalpackages/python/install-2-linux.sh ) (view diffs)
• externalpackages/python/install-2-mac-snowleopard.sh (copied) (copied from issm/trunk-jpl/externalpackages/python/install-2-mac-snowleopard.sh ) (view diffs)
• externalpackages/python/install-2-mac.sh (copied) (copied from issm/trunk-jpl/externalpackages/python/install-2-mac.sh ) (view diffs)
• externalpackages/python/install-2.7.3-linux64.sh (deleted)
• externalpackages/python/install-2.7.3-macosx-snowleopard.sh (deleted)
• externalpackages/python/install-2.7.3-macosx.sh (deleted)
• externalpackages/python/install-3-linux.sh (copied) (copied from issm/trunk-jpl/externalpackages/python/install-3-linux.sh ) (view diffs)
• externalpackages/python/install-3-mac-snowleopard.sh (copied) (copied from issm/trunk-jpl/externalpackages/python/install-3-mac-snowleopard.sh ) (view diffs)
• externalpackages/python/install-3-mac.sh (copied) (copied from issm/trunk-jpl/externalpackages/python/install-3-mac.sh ) (view diffs)
• externalpackages/python/install-3.2.2-linux64.sh (deleted)
• externalpackages/python/install-3.2.2-macosx-snowleopard.sh (deleted)
• externalpackages/python/install-3.2.2-macosx.sh (deleted)
• externalpackages/sqlite/install.sh (modified) (view diffs)
• jenkins/aws-amazon_linux-solid_earth (modified) (view diffs)
• jenkins/jenkins.sh (modified) (view diffs)
• jenkins/pine_island-mac-adolc-ampion (modified) (view diffs)
• jenkins/pine_island-mac-basic (modified) (view diffs)
• jenkins/pine_island-mac-binaries-matlab (modified) (view diffs)
• jenkins/pine_island-mac-binaries-python (deleted)
• jenkins/pine_island-mac-binaries-python-2 (copied) (copied from issm/trunk-jpl/jenkins/pine_island-mac-binaries-python-2 ) (view diffs)
• jenkins/pine_island-mac-binaries-python-3 (copied) (copied from issm/trunk-jpl/jenkins/pine_island-mac-binaries-python-3 ) (view diffs)
• jenkins/pine_island-mac-dakota (modified) (view diffs)
• jenkins/pine_island-mac-examples (modified) (view diffs)
• jenkins/pine_island-mac-full (modified) (view diffs)
• jenkins/pine_island-mac-full-valgrind (modified) (view diffs)
• jenkins/pine_island-mac-python (deleted)
• jenkins/pine_island-mac-solid_earth (modified) (view diffs)
• jenkins/pine_island-mac-solid_earth-lambert (modified) (view diffs)
• jenkins/pleiades-dakota (copied) (copied from issm/trunk-jpl/jenkins/pleiades-dakota ) (view diffs)
• jenkins/pleiades-solid_earth (copied) (copied from issm/trunk-jpl/jenkins/pleiades-solid_earth ) (view diffs)
• jenkins/ross-debian_linux-binaries-matlab (modified) (view diffs)
• jenkins/ross-debian_linux-binaries-python (deleted)
• jenkins/ross-debian_linux-binaries-python-2 (copied) (copied from issm/trunk-jpl/jenkins/ross-debian_linux-binaries-python-2 ) (view diffs)
• jenkins/ross-debian_linux-binaries-python-3 (copied) (copied from issm/trunk-jpl/jenkins/ross-debian_linux-binaries-python-3 ) (view diffs)
• jenkins/ross-debian_linux-codipack (modified) (view diffs)
• jenkins/ross-debian_linux-dakota (modified) (view diffs)
• jenkins/ross-debian_linux-full (modified) (view diffs)
• jenkins/ross-debian_linux-full-mplapack (copied) (copied from issm/trunk-jpl/jenkins/ross-debian_linux-full-mplapack ) (view diffs)
• jenkins/ross-debian_linux-full-valgrind (modified) (view diffs)
• jenkins/ross-debian_linux-python (modified) (view diffs)
• jenkins/ross-debian_linux-solid_earth (modified) (view diffs)
• jenkins/ross-win-msys2-mingw-msmpi-basic (modified) (view diffs)
• m4/issm_options.m4 (modified) (view diffs)
• packagers/linux/complete-issm-linux-binaries-python-2.sh (copied) (copied from issm/trunk-jpl/packagers/linux/complete-issm-linux-binaries-python-2.sh ) (view diffs)
• packagers/linux/complete-issm-linux-binaries-python-3.sh (copied) (copied from issm/trunk-jpl/packagers/linux/complete-issm-linux-binaries-python-3.sh ) (view diffs)
• packagers/linux/complete-issm-linux-binaries-python.sh (deleted)
• packagers/linux/package-issm-linux-binaries-matlab.sh (modified) (view diffs)
• packagers/linux/package-issm-linux-binaries-python-2.sh (copied) (copied from issm/trunk-jpl/packagers/linux/package-issm-linux-binaries-python-2.sh ) (view diffs)
• packagers/linux/package-issm-linux-binaries-python-3.sh (copied) (copied from issm/trunk-jpl/packagers/linux/package-issm-linux-binaries-python-3.sh ) (view diffs)
• packagers/linux/package-issm-linux-binaries-python.sh (deleted)
• packagers/linux/transfer-issm-linux-binaries.sh (modified) (view diffs)
• packagers/mac/commit_for_signing-issm-mac-binaries-matlab.sh (modified) (view diffs)
• packagers/mac/commit_for_signing-issm-mac-binaries-python-2.sh (copied) (copied from issm/trunk-jpl/packagers/mac/commit_for_signing-issm-mac-binaries-python-2.sh ) (view diffs)
• packagers/mac/commit_for_signing-issm-mac-binaries-python-3.sh (copied) (copied from issm/trunk-jpl/packagers/mac/commit_for_signing-issm-mac-binaries-python-3.sh ) (view diffs)
• packagers/mac/commit_for_signing-issm-mac-binaries-python.sh (deleted)
• packagers/mac/complete-issm-mac-binaries-matlab.sh (modified) (view diffs)
• packagers/mac/complete-issm-mac-binaries-python-2.sh (copied) (copied from issm/trunk-jpl/packagers/mac/complete-issm-mac-binaries-python-2.sh ) (view diffs)
• packagers/mac/complete-issm-mac-binaries-python-3.sh (copied) (copied from issm/trunk-jpl/packagers/mac/complete-issm-mac-binaries-python-3.sh ) (view diffs)
• packagers/mac/complete-issm-mac-binaries-python.sh (deleted)
• packagers/mac/package-issm-mac-binaries-matlab.sh (modified) (view diffs)
• packagers/mac/package-issm-mac-binaries-python-2.sh (copied) (copied from issm/trunk-jpl/packagers/mac/package-issm-mac-binaries-python-2.sh ) (view diffs)
• packagers/mac/package-issm-mac-binaries-python-3.sh (copied) (copied from issm/trunk-jpl/packagers/mac/package-issm-mac-binaries-python-3.sh ) (view diffs)
• packagers/mac/package-issm-mac-binaries-python.sh (deleted)
• packagers/mac/sign-issm-mac-binaries-matlab.sh (modified) (view diffs)
• packagers/mac/sign-issm-mac-binaries-python-2.sh (copied) (copied from issm/trunk-jpl/packagers/mac/sign-issm-mac-binaries-python-2.sh ) (view diffs)
• packagers/mac/sign-issm-mac-binaries-python-3.sh (copied) (copied from issm/trunk-jpl/packagers/mac/sign-issm-mac-binaries-python-3.sh ) (view diffs)
• packagers/mac/sign-issm-mac-binaries-python.sh (deleted)
• packagers/mac/test-issm-mac-binaries-matlab.sh (modified) (view diffs)
• packagers/mac/test-issm-mac-binaries-python-2.sh (copied) (copied from issm/trunk-jpl/packagers/mac/test-issm-mac-binaries-python-2.sh ) (view diffs)
• packagers/mac/test-issm-mac-binaries-python-3.sh (copied) (copied from issm/trunk-jpl/packagers/mac/test-issm-mac-binaries-python-3.sh ) (view diffs)
• packagers/mac/test-issm-mac-binaries-python.sh (deleted)
• packagers/mac/transfer-issm-mac-binaries.sh (modified) (view diffs)
• packagers/win7 (deleted)
• scripts/DownloadExternalPackage.sh (modified) (view diffs)
• src (modified) (view diffs)
• src/c/Makefile.am (modified) (view diffs)
• src/c/analyses/AdjointHorizAnalysis.cpp (modified) (view diffs)
• src/c/analyses/AdjointHorizAnalysis.h (modified) (view diffs)
• src/c/analyses/BalancethicknessAnalysis.cpp (modified) (view diffs)
• src/c/analyses/FreeSurfaceBaseAnalysis.cpp (modified) (view diffs)
• src/c/analyses/FreeSurfaceTopAnalysis.cpp (modified) (view diffs)
• src/c/analyses/HydrologyGlaDSAnalysis.cpp (modified) (view diffs)
• src/c/analyses/HydrologyShaktiAnalysis.cpp (modified) (view diffs)
• src/c/analyses/HydrologyTwsAnalysis.cpp (modified) (view diffs)
• src/c/analyses/LevelsetAnalysis.cpp (modified) (view diffs)
• src/c/analyses/LevelsetAnalysis.h (modified) (view diffs)
• src/c/analyses/LoveAnalysis.cpp (modified) (view diffs)
• src/c/analyses/MasstransportAnalysis.cpp (modified) (view diffs)
• src/c/analyses/SamplingAnalysis.cpp (modified) (view diffs)
• src/c/analyses/SamplingAnalysis.h (modified) (view diffs)
• src/c/analyses/SealevelchangeAnalysis.cpp (modified) (view diffs)
• src/c/analyses/SmbAnalysis.cpp (modified) (view diffs)
• src/c/analyses/StressbalanceAnalysis.cpp (modified) (view diffs)
• src/c/analyses/StressbalanceAnalysis.h (modified) (view diffs)
• src/c/analyses/StressbalanceSIAAnalysis.cpp (modified) (view diffs)
• src/c/analyses/StressbalanceVerticalAnalysis.cpp (modified) (view diffs)
• src/c/classes/Cfdragcoeffabsgrad.cpp (modified) (view diffs)
• src/c/classes/Cfdragcoeffabsgrad.h (modified) (view diffs)
• src/c/classes/Cflevelsetmisfit.cpp (modified) (view diffs)
• src/c/classes/Cflevelsetmisfit.h (modified) (view diffs)
• src/c/classes/Cfsurfacelogvel.cpp (modified) (view diffs)
• src/c/classes/Cfsurfacelogvel.h (modified) (view diffs)
• src/c/classes/Cfsurfacesquare.cpp (modified) (view diffs)
• src/c/classes/Cfsurfacesquare.h (modified) (view diffs)
• src/c/classes/Elements/Element.cpp (modified) (view diffs)
• src/c/classes/Elements/Element.h (modified) (view diffs)
• src/c/classes/Elements/Penta.cpp (modified) (view diffs)
• src/c/classes/Elements/Penta.h (modified) (view diffs)
• src/c/classes/Elements/Seg.h (modified) (view diffs)
• src/c/classes/Elements/Tetra.cpp (modified) (view diffs)
• src/c/classes/Elements/Tetra.h (modified) (view diffs)
• src/c/classes/Elements/Tria.cpp (modified) (view diffs)
• src/c/classes/Elements/Tria.h (modified) (view diffs)
• src/c/classes/ExternalResults/GenericExternalResult.h (modified) (view diffs)
• src/c/classes/FemModel.cpp (modified) (view diffs)
• src/c/classes/FemModel.h (modified) (view diffs)
• src/c/classes/GrdLoads.cpp (modified) (view diffs)
• src/c/classes/GrdLoads.h (modified) (view diffs)
• src/c/classes/Inputs/TransientInput.cpp (modified) (view diffs)
• src/c/classes/Loads/Channel.cpp (modified) (view diffs)
• src/c/classes/Loads/Penpair.cpp (modified) (view diffs)
• src/c/classes/Materials/Material.h (modified) (view diffs)
• src/c/classes/Materials/Matestar.cpp (modified) (view diffs)
• src/c/classes/Materials/Matestar.h (modified) (view diffs)
• src/c/classes/Materials/Matice.cpp (modified) (view diffs)
• src/c/classes/Materials/Matice.h (modified) (view diffs)
• src/c/classes/Materials/Matlitho.h (modified) (view diffs)
• src/c/classes/Node.cpp (modified) (view diffs)
• src/c/classes/Radar.h (modified) (view diffs)
• src/c/classes/SealevelGeometry.cpp (modified) (view diffs)
• src/c/classes/SealevelGeometry.h (modified) (view diffs)
• src/c/classes/matrix/ElementMatrix.cpp (modified) (view diffs)
• src/c/classes/matrix/ElementMatrix.h (modified) (view diffs)
• src/c/cores/ProcessArguments.cpp (modified) (view diffs)
• src/c/cores/bmb_core.cpp (modified) (view diffs)
• src/c/cores/controladm1qn3_core.cpp (modified) (view diffs)
• src/c/cores/controltao_core.cpp (modified) (view diffs)
• src/c/cores/groundingline_core.cpp (modified) (view diffs)
• src/c/cores/love_core.cpp (modified) (view diffs)
• src/c/cores/masstransport_core.cpp (modified) (view diffs)
• src/c/cores/movingfront_core.cpp (modified) (view diffs)
• src/c/cores/sampling_core.cpp (modified) (view diffs)
• src/c/cores/sealevelchange_core.cpp (modified) (view diffs)
• src/c/cores/stressbalance_core.cpp (modified) (view diffs)
• src/c/cores/transient_core.cpp (modified) (view diffs)
• src/c/datastructures/DataSet.cpp (modified) (view diffs)
• src/c/modules/Calvingx/Calvingx.cpp (modified) (view diffs)
• src/c/modules/FloatingiceMeltingRatex/FloatingiceMeltingRatex.cpp (modified) (view diffs)
• src/c/modules/FloatingiceMeltingRatex/FloatingiceMeltingRatex.h (modified) (view diffs)
• src/c/modules/FrontalForcingsx/FrontalForcingsx.cpp (modified) (view diffs)
• src/c/modules/GetVectorFromInputsx/GetVectorFromInputsx.h (modified) (view diffs)
• src/c/modules/KillIcebergsx/KillIcebergsx.cpp (modified) (view diffs)
• src/c/modules/KillIcebergsx/KillIcebergsx.h (modified) (view diffs)
• src/c/modules/ModelProcessorx/CreateOutputDefinitions.cpp (modified) (view diffs)
• src/c/modules/ModelProcessorx/CreateParameters.cpp (modified) (view diffs)
• src/c/modules/ModelProcessorx/ModelProcessorx.cpp (modified) (view diffs)
• src/c/modules/ModelProcessorx/ModelProcessorx.h (modified) (view diffs)
• src/c/modules/ModelProcessorx/Transient/UpdateParametersTransient.cpp (copied) (copied from issm/trunk-jpl/src/c/modules/ModelProcessorx/Transient/UpdateParametersTransient.cpp ) (view diffs)
• src/c/modules/SetControlInputsFromVectorx/SetControlInputsFromVectorx.cpp (modified) (view diffs)
• src/c/modules/SetControlInputsFromVectorx/SetControlInputsFromVectorx.h (modified) (view diffs)
• src/c/modules/Solverx/Solverx.cpp (modified) (view diffs)
• src/c/modules/StochasticForcingx/StochasticForcingx.cpp (modified) (view diffs)
• src/c/modules/SurfaceAbsVelMisfitx/SurfaceAbsVelMisfitx.cpp (modified) (view diffs)
• src/c/modules/SurfaceAverageVelMisfitx/SurfaceAverageVelMisfitx.cpp (modified) (view diffs)
• src/c/modules/SurfaceLogVelMisfitx/SurfaceLogVelMisfitx.cpp (modified) (view diffs)
• src/c/modules/SurfaceLogVxVyMisfitx/SurfaceLogVxVyMisfitx.cpp (modified) (view diffs)
• src/c/modules/SurfaceMassBalancex/SurfaceMassBalancex.cpp (modified) (view diffs)
• src/c/modules/SurfaceRelVelMisfitx/SurfaceRelVelMisfitx.cpp (modified) (view diffs)
• src/c/shared/Enum/Enum.vim (modified) (view diffs)
• src/c/shared/Enum/EnumDefinitions.h (modified) (view diffs)
• src/c/shared/Enum/EnumToStringx.cpp (modified) (view diffs)
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• src/c/shared/Random/randomgenerator.cpp (modified) (view diffs)
• src/c/shared/io/Marshalling/IoCodeConversions.cpp (modified) (view diffs)
• src/c/shared/io/Marshalling/Marshalling.cpp (modified) (view diffs)
• src/c/solutionsequences/convergence.cpp (modified) (view diffs)
• src/c/solutionsequences/solutionsequence_sampling.cpp (modified) (view diffs)
• src/jl (deleted)
• src/m/boundaryconditions/SetMLHOBC.m (deleted)
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• src/m/boundaryconditions/SetMOLHOBC.py (copied) (copied from issm/trunk-jpl/src/m/boundaryconditions/SetMOLHOBC.py ) (view diffs)
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• src/m/classes/SMBautoregression.py (modified) (view diffs)
• src/m/classes/SMBpddSicopolis.py (modified) (view diffs)
• src/m/classes/autoregressionlinearbasalforcings.m (copied) (copied from issm/trunk-jpl/src/m/classes/autoregressionlinearbasalforcings.m ) (view diffs)
• src/m/classes/autoregressionlinearbasalforcings.py (copied) (copied from issm/trunk-jpl/src/m/classes/autoregressionlinearbasalforcings.py ) (view diffs)
• src/m/classes/basalforcings.m (modified) (view diffs)
• src/m/classes/calvingparameterization.m (copied) (copied from issm/trunk-jpl/src/m/classes/calvingparameterization.m ) (view diffs)
• src/m/classes/calvingtest.m (copied) (copied from issm/trunk-jpl/src/m/classes/calvingtest.m ) (view diffs)
• src/m/classes/calvingvonmises.m (modified) (view diffs)
• src/m/classes/calvingvonmises.py (modified) (view diffs)
• src/m/classes/clusters/computecanada.m (copied) (copied from issm/trunk-jpl/src/m/classes/clusters/computecanada.m ) (view diffs)
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• src/m/classes/frontalforcingsrignotautoregression.py (modified) (view diffs)
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