Changeset 27035 for issm/trunk/externalpackages/dakota/install-6.2-pleiades.sh

Timestamp:

06/01/22 05:01:48 (3 years ago)

Author:

Mathieu Morlighem

Message:

merged trunk-jpl and trunk for revision 27033

Location:

issm/trunk

Files:

• . (modified) (1 prop)
• externalpackages/dakota/install-6.2-pleiades.sh (modified) (3 diffs)

issm/trunk/externalpackages/dakota/install-6.2-pleiades.sh ¶

@@ -2 +2 @@
 set -eu
 
-#Some cleanup
-rm -rf Dakota
-rm -rf src 
-rm -rf build 
-rm -rf install 
-mkdir src build install 
 
-#Download from ISSM server
-$ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://issm.ess.uci.edu/files/externalpackages/dakota-6.2-public.src.tar.gz' 'dakota-6.2-public-src.tar.gz'
+## Constants
+#
+VER="6.2"
 
-#Untar 
-tar -zxvf dakota-6.2-public-src.tar.gz
+PREFIX="${ISSM_DIR}/externalpackages/dakota/install" # Set to location where external package should be installed
 
-#Move Dakota to src directory
-mv dakota-6.2.0.src/* src
-rm -rf dakota-6.2.0.src
+## Environment
+#
+export BLAS_LIBS="-L/nasa/intel/Compiler/2018.3.222/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/ -lmkl_intel_lp64 -lmkl_sequential -lmkl_core" # Need to export BLAS_LIBS *and* pass it as an option to CMake to ensure that external packages also find it; should upate to /nasa/intel/Compiler/2021.4.0/mkl/2021.4.0/lib/intel64
+export CXXFLAGS='-std=c++11'
+export DAK_BUILD=${ISSM_DIR}/externalpackages/dakota/build # DO NOT CHANGE THIS
+export DAK_INSTALL=${PREFIX} # DO NOT CHANGE THIS
+export DAK_SRC=${ISSM_DIR}/externalpackages/dakota/src # DO NOT CHANGE THIS
+export LAPACK_LIBS="-L/nasa/intel/Compiler/2018.3.222/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/lib/intel64/ -lmkl_intel_lp64 -lmkl_sequential -lmkl_core" # Need to export LAPACK_LIBS *and* pass it as an option to CMake to ensure that external packages also find it; should upate to /nasa/intel/Compiler/2021.4.0/mkl/2021.4.0/lib/intel64
 
-#Set up Dakota cmake variables and config
-export DAK_SRC=$ISSM_DIR/externalpackages/dakota/src
-export DAK_BUILD=$ISSM_DIR/externalpackages/dakota/build
-cp $DAK_SRC/cmake/BuildDakotaTemplate.cmake $DAK_SRC/cmake/BuildDakotaCustom.cmake
-patch $DAK_SRC/cmake/BuildDakotaCustom.cmake configs/6.2/BuildDakotaCustom.cmake.pfe.patch
-patch $DAK_SRC/cmake/DakotaDev.cmake configs/6.2/DakotaDev.cmake.patch
-patch $DAK_SRC/CMakeLists.txt configs/6.2/CMakeLists.txt.pfe.patch
+# Cleanup
+rm -rf ${DAK_BUILD} ${DAK_INSTALL} ${DAK_SRC}
+mkdir -p ${DAK_BUILD} ${DAK_INSTALL} ${DAK_SRC}
 
-#Apply patches
-patch src/src/NonDSampling.cpp configs/6.2/NonDSampling.cpp.patch
-patch src/src/NonDLocalReliability.cpp configs/6.2/NonDLocalReliability.cpp.patch
-patch src/packages/pecos/src/pecos_global_defs.hpp configs/6.2/pecos_global_defs.hpp.patch
+# Download source
+${ISSM_DIR}/scripts/DownloadExternalPackage.sh "https://issm.ess.uci.edu/files/externalpackages/dakota-${VER}-public.src.tar.gz" "dakota-${VER}-public-src.tar.gz"
 
-#Configure dakota
-cd $DAK_BUILD
+# Unpack source
+tar -zxvf dakota-${VER}-public-src.tar.gz
 
+# Move source to 'src' directory
+mv dakota-${VER}.0.src/* ${DAK_SRC}
+rm -rf dakota-${VER}.0.src
+
+# Copy customized source and configuration files to 'src' directory
+cp configs/${VER}/packages/DDACE/src/Analyzer/MainEffectsExcelOutput.cpp ${DAK_SRC}/packages/DDACE/src/Analyzer
+cp configs/${VER}/packages/queso/src/misc/src/1DQuadrature.C ${DAK_SRC}/packages/queso/src/misc/src
+cp configs/${VER}/packages/surfpack/src/surfaces/nkm/NKM_KrigingModel.cpp ${DAK_SRC}/packages/surfpack/src/surfaces/nkm
+cp configs/${VER}/packages/VPISparseGrid/src/sandia_rules.cpp ${DAK_SRC}/packages/VPISparseGrid/src
+cp configs/${VER}/src/DakotaInterface.cpp ${DAK_SRC}/src
+cp configs/${VER}/src/NonDLocalReliability.cpp ${DAK_SRC}/src
+cp configs/${VER}/src/NonDSampling.cpp ${DAK_SRC}/src
+
+# Copy customized source and configuration files specific to Linux to 'src' directory
+cp configs/${VER}/linux/cmake/BuildDakotaCustom.pleiades.cmake ${DAK_SRC}/cmake/BuildDakotaCustom.cmake
+cp configs/${VER}/linux/cmake/DakotaDev.cmake ${DAK_SRC}/cmake
+
+# Configure
+cd ${DAK_BUILD}
 cmake \
         -DBUILD_SHARED_LIBS=ON \
         -DBUILD_STATIC_LIBS=OFF \
         -DCMAKE_C_COMPILER=mpicc \
+        -DCMAKE_C_FLAGS="-Wno-error=implicit-function-declaration" \
         -DCMAKE_CXX_COMPILER=mpicxx \
-        -DCMAKE_Fortran_COMPILER=mpif77 \
+        -DCMAKE_Fortran_COMPILER=/usr/bin/gfortran \
         -DBoost_NO_BOOST_CMAKE=TRUE \
         -DHAVE_ACRO=OFF \
@@ -50 +63 @@
         ${DAK_SRC}
 
-cd ..
-
-#Compile and install dakota
-cd $DAK_BUILD
-if [ $# -eq 0 ];
-then
+# Compile and install
+if [ $# -eq 0 ]; then
         make
         make install
@@ -62 +71 @@
         make -j $1 install
 fi
-cd ..
+
+cd ${DAK_INSTALL}
+
+# Comment out definition of HAVE_MPI in Teuchos config header file in order to
+# avoid conflict with our definition
+sed -i -e "s/#define HAVE_MPI/\/* #define HAVE_MPI *\//g" include/Teuchos_config.h