Changeset 11995

Timestamp:

04/16/12 14:57:18 (13 years ago)

Author:

Mathieu Morlighem

Message:

merged trunk-jpl and trunk for revision 11994M

Location:

issm/trunk

Files:

• . (modified) (view diffs)
• COPYING (deleted)
• ChangeLog (deleted)
• INSTALL (deleted)
• LICENSE (deleted)
• Makefile.am (modified) (view diffs)
• NEWS (deleted)
• ar-lib (deleted)
• aux-config (copied) (copied from issm/trunk-jpl/aux-config ) (view diffs)
• compile (deleted)
• configs/config-linux64-murdo-nopetsc.sh (copied) (copied from issm/trunk-jpl/configs/config-linux64-murdo-nopetsc.sh ) (view diffs)
• configs/config-linux64-murdo.sh (modified) (view diffs)
• configs/config-macosx64-larour-ad.sh (copied) (copied from issm/trunk-jpl/configs/config-macosx64-larour-ad.sh ) (view diffs)
• configs/config-macosx64-larour-nopetsc.sh (copied) (copied from issm/trunk-jpl/configs/config-macosx64-larour-nopetsc.sh ) (view diffs)
• configs/config-macosx64-larour-python.sh (copied) (copied from issm/trunk-jpl/configs/config-macosx64-larour-python.sh ) (view diffs)
• configs/config-macosx64-larour.sh (copied) (copied from issm/trunk-jpl/configs/config-macosx64-larour.sh ) (view diffs)
• configs/config-macosx64-nicole.sh (copied) (copied from issm/trunk-jpl/configs/config-macosx64-nicole.sh ) (view diffs)
• configs/config-win7-32.sh (modified) (view diffs)
• configs/config-win7-64.sh (modified) (view diffs)
• configure.ac (modified) (view diffs)
• cron (modified) (view diffs)
• cron/configs/linux64_daily (copied) (copied from issm/trunk-jpl/cron/configs/linux64_daily ) (view diffs)
• cron/configs/linux64_larour (deleted)
• cron/configs/linux64_morlighem_daily (deleted)
• cron/configs/linux64_morlighem_nightly (deleted)
• cron/configs/linux64_morlighem_validation (deleted)
• cron/configs/linux64_nightly (copied) (copied from issm/trunk-jpl/cron/configs/linux64_nightly ) (view diffs)
• cron/configs/linux64_schlegel_daily (deleted)
• cron/configs/linux64_schlegel_nightly (deleted)
• cron/configs/linux64_schlegel_ucitrunk (deleted)
• cron/configs/linux64_schlegel_validation (deleted)
• cron/configs/linux64_seroussi (deleted)
• cron/configs/linux64_seroussi_daily (deleted)
• cron/configs/linux64_seroussi_nightly (deleted)
• cron/configs/linux64_seroussi_ucitrunk (deleted)
• cron/configs/linux64_seroussi_validation (deleted)
• cron/configs/macosx32_seroussi (deleted)
• cron/configs/macosx64_daily (copied) (copied from issm/trunk-jpl/cron/configs/macosx64_daily ) (view diffs)
• cron/configs/macosx64_larour (deleted)
• cron/configs/macosx64_nightly (copied) (copied from issm/trunk-jpl/cron/configs/macosx64_nightly ) (view diffs)
• cron/configs/win732 (copied) (copied from issm/trunk-jpl/cron/configs/win732 ) (view diffs)
• cron/configs/win764 (copied) (copied from issm/trunk-jpl/cron/configs/win764 ) (view diffs)
• cron/configs/winxp32 (copied) (copied from issm/trunk-jpl/cron/configs/winxp32 ) (view diffs)
• cron/configs/winxp32_larour (deleted)
• cron/cronfiles/mac_cronfile (modified) (view diffs)
• cron/nightlyrun.sh (modified) (view diffs)
• depcomp (deleted)
• etc/environment.sh (modified) (view diffs)
• etc/environment_variables.sh (modified) (view diffs)
• examples/Jakobshavn (copied) (copied from issm/trunk-jpl/examples/Jakobshavn ) (view diffs)
• examples/Jakobshavn/Domain.exp (copied) (copied from issm/trunk-jpl/examples/Jakobshavn/Domain.exp ) (view diffs)
• examples/Jakobshavn/Front.exp (copied) (copied from issm/trunk-jpl/examples/Jakobshavn/Front.exp ) (view diffs)
• examples/Jakobshavn/Jks.par (copied) (copied from issm/trunk-jpl/examples/Jakobshavn/Jks.par ) (view diffs)
• examples/Jakobshavn/WeakB.exp (copied) (copied from issm/trunk-jpl/examples/Jakobshavn/WeakB.exp ) (view diffs)
• examples/Jakobshavn/runme.m (copied) (copied from issm/trunk-jpl/examples/Jakobshavn/runme.m ) (view diffs)
• examples/SquareIceShelf/runme.m (modified) (view diffs)
• execution (modified) (view diffs)
• externalpackages/adolc/install.sh (modified) (view diffs)
• externalpackages/android (deleted)
• externalpackages/android-dev-dir (copied) (copied from issm/trunk-jpl/externalpackages/android-dev-dir ) (view diffs)
• externalpackages/android-dev-dir/android-emulators (copied) (copied from issm/trunk-jpl/externalpackages/android-dev-dir/android-emulators ) (view diffs)
• externalpackages/android-ndk (copied) (copied from issm/trunk-jpl/externalpackages/android-ndk ) (view diffs)
• externalpackages/android-ndk/android-ndk-r7b-darwin-x86.tar.bz2 (copied) (copied from issm/trunk-jpl/externalpackages/android-ndk/android-ndk-r7b-darwin-x86.tar.bz2 ) (view diffs)
• externalpackages/android-ndk/install.sh (copied) (copied from issm/trunk-jpl/externalpackages/android-ndk/install.sh ) (view diffs)
• externalpackages/android-sdk (copied) (copied from issm/trunk-jpl/externalpackages/android-sdk ) (view diffs)
• externalpackages/android-sdk/android-sdk-r16-macosx.zip (copied) (copied from issm/trunk-jpl/externalpackages/android-sdk/android-sdk-r16-macosx.zip ) (view diffs)
• externalpackages/android-sdk/apache-ant-1.8.2-bin.zip (copied) (copied from issm/trunk-jpl/externalpackages/android-sdk/apache-ant-1.8.2-bin.zip ) (view diffs)
• externalpackages/android-sdk/install.sh (copied) (copied from issm/trunk-jpl/externalpackages/android-sdk/install.sh ) (view diffs)
• externalpackages/boost/boost_1_45_0.tar.gz (deleted)
• externalpackages/boost/boost_1_49_0.tar.gz (copied) (copied from issm/trunk-jpl/externalpackages/boost/boost_1_49_0.tar.gz ) (view diffs)
• externalpackages/boost/install.sh (modified) (view diffs)
• externalpackages/cccl/issm/cccl (modified) (view diffs)
• externalpackages/chaco/chaco_njs_notes.txt (copied) (copied from issm/trunk-jpl/externalpackages/chaco/chaco_njs_notes.txt ) (view diffs)
• externalpackages/cm_and_cb_utilities (copied) (copied from issm/trunk-jpl/externalpackages/cm_and_cb_utilities ) (view diffs)
• externalpackages/cm_and_cb_utilities/Contents.m (copied) (copied from issm/trunk-jpl/externalpackages/cm_and_cb_utilities/Contents.m ) (view diffs)
• externalpackages/cm_and_cb_utilities/cbfit.m (copied) (copied from issm/trunk-jpl/externalpackages/cm_and_cb_utilities/cbfit.m ) (view diffs)
• externalpackages/cm_and_cb_utilities/cbfreeze.m (copied) (copied from issm/trunk-jpl/externalpackages/cm_and_cb_utilities/cbfreeze.m ) (view diffs)
• externalpackages/cm_and_cb_utilities/cbhandle.m (copied) (copied from issm/trunk-jpl/externalpackages/cm_and_cb_utilities/cbhandle.m ) (view diffs)
• externalpackages/cm_and_cb_utilities/cblabel.m (copied) (copied from issm/trunk-jpl/externalpackages/cm_and_cb_utilities/cblabel.m ) (view diffs)
• externalpackages/cm_and_cb_utilities/cbunits.m (copied) (copied from issm/trunk-jpl/externalpackages/cm_and_cb_utilities/cbunits.m ) (view diffs)
• externalpackages/cm_and_cb_utilities/cm_and_cb_utilities.png (copied) (copied from issm/trunk-jpl/externalpackages/cm_and_cb_utilities/cm_and_cb_utilities.png ) (view diffs)
• externalpackages/cm_and_cb_utilities/cmapping.m (copied) (copied from issm/trunk-jpl/externalpackages/cm_and_cb_utilities/cmapping.m ) (view diffs)
• externalpackages/cm_and_cb_utilities/cmfit.m (copied) (copied from issm/trunk-jpl/externalpackages/cm_and_cb_utilities/cmfit.m ) (view diffs)
• externalpackages/cm_and_cb_utilities/cmjoin.m (copied) (copied from issm/trunk-jpl/externalpackages/cm_and_cb_utilities/cmjoin.m ) (view diffs)
• externalpackages/cm_and_cb_utilities/cmlines.m (copied) (copied from issm/trunk-jpl/externalpackages/cm_and_cb_utilities/cmlines.m ) (view diffs)
• externalpackages/dakota/dakota_njs_notes_macos64.txt (copied) (copied from issm/trunk-jpl/externalpackages/dakota/dakota_njs_notes_macos64.txt ) (view diffs)
• externalpackages/dakota/install-linux64-murdo.sh (copied) (copied from issm/trunk-jpl/externalpackages/dakota/install-linux64-murdo.sh ) (view diffs)
• externalpackages/dakota/install-macosx64.sh (modified) (view diffs)
• externalpackages/dyson/ldap.pl (modified) (view diffs)
• externalpackages/export_fig/copyfig.m (copied) (copied from issm/trunk-jpl/externalpackages/export_fig/copyfig.m ) (view diffs)
• externalpackages/export_fig/eps2pdf.m (modified) (view diffs)
• externalpackages/export_fig/export_fig.m (modified) (view diffs)
• externalpackages/export_fig/isolate_axes.m (modified) (view diffs)
• externalpackages/export_fig/license.txt (modified) (view diffs)
• externalpackages/export_fig/print2array.m (modified) (view diffs)
• externalpackages/export_fig/print2eps.m (modified) (view diffs)
• externalpackages/geos5 (copied) (copied from issm/trunk-jpl/externalpackages/geos5 ) (view diffs)
• externalpackages/geos5/install.sh (copied) (copied from issm/trunk-jpl/externalpackages/geos5/install.sh ) (view diffs)
• externalpackages/gmake (copied) (copied from issm/trunk-jpl/externalpackages/gmake ) (view diffs)
• externalpackages/gmake/install.sh (copied) (copied from issm/trunk-jpl/externalpackages/gmake/install.sh ) (view diffs)
• externalpackages/gmake/make-3.82.tar.gz (copied) (copied from issm/trunk-jpl/externalpackages/gmake/make-3.82.tar.gz ) (view diffs)
• externalpackages/gsl (copied) (copied from issm/trunk-jpl/externalpackages/gsl ) (view diffs)
• externalpackages/gsl/README (copied) (copied from issm/trunk-jpl/externalpackages/gsl/README ) (view diffs)
• externalpackages/gsl/gsl-1.15.tar.gz (copied) (copied from issm/trunk-jpl/externalpackages/gsl/gsl-1.15.tar.gz ) (view diffs)
• externalpackages/gsl/install-linux64-murdo.sh (copied) (copied from issm/trunk-jpl/externalpackages/gsl/install-linux64-murdo.sh ) (view diffs)
• externalpackages/gsl/install-macosx64.sh (copied) (copied from issm/trunk-jpl/externalpackages/gsl/install-macosx64.sh ) (view diffs)
• externalpackages/intel (deleted)
• externalpackages/matlab/install.sh (modified) (view diffs)
• externalpackages/metis/configs/4.0/altix64/Makefile.in.patch (modified) (view diffs)
• externalpackages/metis/configs/4.0/cosmos/Makefile.in.patch (modified) (view diffs)
• externalpackages/metis/configs/4.0/greenplanet/Makefile.in.patch (modified) (view diffs)
• externalpackages/metis/configs/4.0/linux64/Makefile.in.patch (modified) (view diffs)
• externalpackages/metis/configs/4.0/macosx32/Makefile.in.patch (modified) (view diffs)
• externalpackages/metis/configs/4.0/macosx64/Makefile.in.patch (modified) (view diffs)
• externalpackages/metis/configs/4.0/pleiades/Makefile.in.patch (modified) (view diffs)
• externalpackages/metis/configs/4.0/win32/Makefile.in.patch (modified) (view diffs)
• externalpackages/metis/configs/4.0/win7/Makefile.in.patch (modified) (view diffs)
• externalpackages/metis/install-4.0-win7.sh (modified) (view diffs)
• externalpackages/metis/metis-4.0.patch (modified) (view diffs)
• externalpackages/mitgcm/install.sh (modified) (view diffs)
• externalpackages/modelE (copied) (copied from issm/trunk-jpl/externalpackages/modelE ) (view diffs)
• externalpackages/modelE/install.sh (copied) (copied from issm/trunk-jpl/externalpackages/modelE/install.sh ) (view diffs)
• externalpackages/modelE/modelE_AR5_branch.2012.03.13_10.12.21.tgz (copied) (copied from issm/trunk-jpl/externalpackages/modelE/modelE_AR5_branch.2012.03.13_10.12.21.tgz ) (view diffs)
• externalpackages/nose (copied) (copied from issm/trunk-jpl/externalpackages/nose ) (view diffs)
• externalpackages/nose/install-macosx64sh (copied) (copied from issm/trunk-jpl/externalpackages/nose/install-macosx64sh ) (view diffs)
• externalpackages/packagemaker (copied) (copied from issm/trunk-jpl/externalpackages/packagemaker ) (view diffs)
• externalpackages/packagemaker/install.sh (copied) (copied from issm/trunk-jpl/externalpackages/packagemaker/install.sh ) (view diffs)
• externalpackages/petsc (modified) (view diffs)
• externalpackages/petsc/configs (copied) (copied from issm/trunk-jpl/externalpackages/petsc/configs ) (view diffs)
• externalpackages/petsc/configs/3.1 (copied) (copied from issm/trunk-jpl/externalpackages/petsc/configs/3.1 ) (view diffs)
• externalpackages/petsc/configs/3.1/win7 (copied) (copied from issm/trunk-jpl/externalpackages/petsc/configs/3.1/win7 ) (view diffs)
• externalpackages/petsc/configs/3.1/win7/petscfix.h.patch (copied) (copied from issm/trunk-jpl/externalpackages/petsc/configs/3.1/win7/petscfix.h.patch ) (view diffs)
• externalpackages/petsc/install-2.3.2-macosx64.sh (copied) (copied from issm/trunk-jpl/externalpackages/petsc/install-2.3.2-macosx64.sh ) (view diffs)
• externalpackages/petsc/install-3.1-win7.sh (modified) (view diffs)
• externalpackages/petsc/install-dev-linux64.sh (copied) (copied from issm/trunk-jpl/externalpackages/petsc/install-dev-linux64.sh ) (view diffs)
• externalpackages/python (modified) (view diffs)
• externalpackages/python/Python-2.7.2.tgz (copied) (copied from issm/trunk-jpl/externalpackages/python/Python-2.7.2.tgz ) (view diffs)
• externalpackages/python/install.sh (modified) (view diffs)
• externalpackages/python/patch (copied) (copied from issm/trunk-jpl/externalpackages/python/patch ) (view diffs)
• externalpackages/python/patch/pyport.h.patch (copied) (copied from issm/trunk-jpl/externalpackages/python/patch/pyport.h.patch ) (view diffs)
• externalpackages/python/patch/pyport.h.patch.bugreport (copied) (copied from issm/trunk-jpl/externalpackages/python/patch/pyport.h.patch.bugreport ) (view diffs)
• externalpackages/scipy (copied) (copied from issm/trunk-jpl/externalpackages/scipy ) (view diffs)
• externalpackages/scipy/README (copied) (copied from issm/trunk-jpl/externalpackages/scipy/README ) (view diffs)
• externalpackages/scipy/install-macosx64.sh (copied) (copied from issm/trunk-jpl/externalpackages/scipy/install-macosx64.sh ) (view diffs)
• externalpackages/triangle/README (deleted)
• externalpackages/triangle/configs/android (copied) (copied from issm/trunk-jpl/externalpackages/triangle/configs/android ) (view diffs)
• externalpackages/triangle/configs/android/android-4.0 (copied) (copied from issm/trunk-jpl/externalpackages/triangle/configs/android/android-4.0 ) (view diffs)
• externalpackages/triangle/configs/android/android-4.0/configure.make (copied) (copied from issm/trunk-jpl/externalpackages/triangle/configs/android/android-4.0/configure.make ) (view diffs)
• externalpackages/triangle/install-android-4.0.sh (copied) (copied from issm/trunk-jpl/externalpackages/triangle/install-android-4.0.sh ) (view diffs)
• externalpackages/triangle/install-macosx64.sh (modified) (view diffs)
• externalpackages/triangle/makefile (modified) (view diffs)
• externalpackages/triangle/triangle.c.patch.matlab (copied) (copied from issm/trunk-jpl/externalpackages/triangle/triangle.c.patch.matlab ) (view diffs)
• externalpackages/triangle/triangle.c.patch.python (copied) (copied from issm/trunk-jpl/externalpackages/triangle/triangle.c.patch.python ) (view diffs)
• externalpackages/triangle/triangle.h.patch (modified) (view diffs)
• externalpackages/vim/addons/vim/syntax/c.vim (modified) (view diffs)
• externalpackages/win7 (deleted)
• externalpackages/windows (copied) (copied from issm/trunk-jpl/externalpackages/windows ) (view diffs)
• externalpackages/windows/InstallInstructions.txt (copied) (copied from issm/trunk-jpl/externalpackages/windows/InstallInstructions.txt ) (view diffs)
• externalpackages/windows/README (copied) (copied from issm/trunk-jpl/externalpackages/windows/README ) (view diffs)
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• externalpackages/windows/configs/sdk7.1.win7-32.sh (copied) (copied from issm/trunk-jpl/externalpackages/windows/configs/sdk7.1.win7-32.sh ) (view diffs)
• externalpackages/windows/configs/sdk7.1.win7-64.sh (copied) (copied from issm/trunk-jpl/externalpackages/windows/configs/sdk7.1.win7-64.sh ) (view diffs)
• externalpackages/windows/win7.sdk7.1.exe (copied) (copied from issm/trunk-jpl/externalpackages/windows/win7.sdk7.1.exe ) (view diffs)
• externalpackages/windows/windows_environment.sh (copied) (copied from issm/trunk-jpl/externalpackages/windows/windows_environment.sh ) (view diffs)
• install-sh (deleted)
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• packagers/macosx (copied) (copied from issm/trunk-jpl/packagers/macosx ) (view diffs)
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• src/c/modules/InterpFromMeshToMesh3dx/InterpFromMeshToMesh3dx.cpp (modified) (view diffs)
• src/c/modules/InterpFromMeshToMesh3dx/InterpFromMeshToMesh3dx.h (modified) (view diffs)
• src/c/modules/Mergesolutionfromftogx/Mergesolutionfromftogx.cpp (modified) (view diffs)
• src/c/modules/Mergesolutionfromftogx/Mergesolutionfromftogx.h (modified) (view diffs)
• src/c/modules/ModelProcessorx/CreateElementsVerticesAndMaterials.cpp (modified) (view diffs)
• src/c/modules/ModelProcessorx/CreateParameters.cpp (modified) (view diffs)
• src/c/modules/ModelProcessorx/ModelProcessorx.cpp (modified) (view diffs)
• src/c/modules/ModelProcessorx/Prognostic/UpdateElementsPrognostic.cpp (modified) (view diffs)
• src/c/modules/Orthx/Orthx.cpp (modified) (view diffs)
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• src/c/modules/PointCloudFindNeighborsx/PointCloudFindNeighborsx.h (modified) (view diffs)
• src/c/modules/PointCloudFindNeighborsx/PointCloudFindNeighborsxt.cpp (modified) (view diffs)
• src/c/modules/Reduceloadx/Reduceloadx.cpp (modified) (view diffs)
• src/c/modules/Reduceloadx/Reduceloadx.h (modified) (view diffs)
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• src/c/modules/Reducevectorgtosx/Reducevectorgtosx.h (modified) (view diffs)
• src/c/modules/RequestedOutputsx/RequestedOutputsx.cpp (modified) (view diffs)
• src/c/modules/RequestedOutputsx/RequestedOutputsx.h (modified) (view diffs)
• src/c/modules/SetControlInputsFromVectorx/SetControlInputsFromVectorx.cpp (modified) (view diffs)
• src/c/modules/SetControlInputsFromVectorx/SetControlInputsFromVectorx.h (modified) (view diffs)
• src/c/modules/Solverx/Solverx.cpp (modified) (view diffs)
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• src/c/modules/Solverx/SolverxGsl.cpp (copied) (copied from issm/trunk-jpl/src/c/modules/Solverx/SolverxGsl.cpp ) (view diffs)
• src/c/modules/Solverx/SolverxPetsc.cpp (copied) (copied from issm/trunk-jpl/src/c/modules/Solverx/SolverxPetsc.cpp ) (view diffs)
• src/c/modules/StringToEnumx/StringToEnumx.cpp (modified) (view diffs)
• src/c/modules/SystemMatricesx/SystemMatricesx.cpp (modified) (view diffs)
• src/c/modules/SystemMatricesx/SystemMatricesx.h (modified) (view diffs)
• src/c/modules/TriMeshx (copied) (copied from issm/trunk-jpl/src/c/modules/TriMeshx ) (view diffs)
• src/c/modules/TriMeshx/TriMeshx.cpp (copied) (copied from issm/trunk-jpl/src/c/modules/TriMeshx/TriMeshx.cpp ) (view diffs)
• src/c/modules/TriMeshx/TriMeshx.h (copied) (copied from issm/trunk-jpl/src/c/modules/TriMeshx/TriMeshx.h ) (view diffs)
• src/c/modules/UpdateDynamicConstraintsx/UpdateDynamicConstraintsx.cpp (modified) (view diffs)
• src/c/modules/UpdateDynamicConstraintsx/UpdateDynamicConstraintsx.h (modified) (view diffs)
• src/c/modules/UpdateVertexPositionsx/UpdateVertexPositionsx.cpp (modified) (view diffs)
• src/c/modules/VecMergex/VecMergex.cpp (modified) (view diffs)
• src/c/modules/VecMergex/VecMergex.h (modified) (view diffs)
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• src/c/objects/Bamg/BamgGeom.cpp (modified) (view diffs)
• src/c/objects/Bamg/BamgGeom.h (modified) (view diffs)
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• src/c/objects/ElementResults/BoolElementResult.h (modified) (view diffs)
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• src/c/objects/ElementResults/TriaP1ElementResult.cpp (modified) (view diffs)
• src/c/objects/ElementResults/TriaP1ElementResult.h (modified) (view diffs)
• src/c/objects/Elements/Element.h (modified) (view diffs)
• src/c/objects/Elements/Penta.cpp (modified) (view diffs)
• src/c/objects/Elements/Penta.h (modified) (view diffs)
• src/c/objects/Elements/Tria.cpp (modified) (view diffs)
• src/c/objects/Elements/Tria.h (modified) (view diffs)
• src/c/objects/ExternalResults/BoolExternalResult.cpp (modified) (view diffs)
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• src/c/objects/ExternalResults/DoubleVecExternalResult.cpp (modified) (view diffs)
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• src/c/objects/ExternalResults/ExternalResult.h (modified) (view diffs)
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• src/c/objects/ExternalResults/PetscVecExternalResult.h (modified) (view diffs)
• src/c/objects/ExternalResults/StringExternalResult.cpp (modified) (view diffs)
• src/c/objects/ExternalResults/StringExternalResult.h (modified) (view diffs)
• src/c/objects/FemModel.cpp (modified) (view diffs)
• src/c/objects/Inputs/BoolInput.cpp (modified) (view diffs)
• src/c/objects/Inputs/BoolInput.h (modified) (view diffs)
• src/c/objects/Inputs/ControlInput.cpp (modified) (view diffs)
• src/c/objects/Inputs/ControlInput.h (modified) (view diffs)
• src/c/objects/Inputs/DatasetInput.h (modified) (view diffs)
• src/c/objects/Inputs/DoubleInput.cpp (modified) (view diffs)
• src/c/objects/Inputs/DoubleInput.h (modified) (view diffs)
• src/c/objects/Inputs/Input.h (modified) (view diffs)
• src/c/objects/Inputs/IntInput.cpp (modified) (view diffs)
• src/c/objects/Inputs/IntInput.h (modified) (view diffs)
• src/c/objects/Inputs/PentaP1Input.cpp (modified) (view diffs)
• src/c/objects/Inputs/PentaP1Input.h (modified) (view diffs)
• src/c/objects/Inputs/TransientInput.cpp (modified) (view diffs)
• src/c/objects/Inputs/TransientInput.h (modified) (view diffs)
• src/c/objects/Inputs/TriaP1Input.cpp (modified) (view diffs)
• src/c/objects/Inputs/TriaP1Input.h (modified) (view diffs)
• src/c/objects/Loads/Icefront.cpp (modified) (view diffs)
• src/c/objects/Loads/Icefront.h (modified) (view diffs)
• src/c/objects/Loads/Load.h (modified) (view diffs)
• src/c/objects/Loads/Numericalflux.cpp (modified) (view diffs)
• src/c/objects/Loads/Numericalflux.h (modified) (view diffs)
• src/c/objects/Loads/Pengrid.cpp (modified) (view diffs)
• src/c/objects/Loads/Pengrid.h (modified) (view diffs)
• src/c/objects/Loads/Penpair.cpp (modified) (view diffs)
• src/c/objects/Loads/Penpair.h (modified) (view diffs)
• src/c/objects/Loads/Riftfront.cpp (modified) (view diffs)
• src/c/objects/Loads/Riftfront.h (modified) (view diffs)
• src/c/objects/Materials/Material.h (modified) (view diffs)
• src/c/objects/Materials/Matice.cpp (modified) (view diffs)
• src/c/objects/Materials/Matice.h (modified) (view diffs)
• src/c/objects/Materials/Matpar.h (modified) (view diffs)
• src/c/objects/Node.cpp (modified) (view diffs)
• src/c/objects/Node.h (modified) (view diffs)
• src/c/objects/Numerics/ElementMatrix.cpp (modified) (view diffs)
• src/c/objects/Numerics/ElementMatrix.h (modified) (view diffs)
• src/c/objects/Numerics/ElementVector.cpp (modified) (view diffs)
• src/c/objects/Numerics/ElementVector.h (modified) (view diffs)
• src/c/objects/Numerics/Matrix.cpp (copied) (copied from issm/trunk-jpl/src/c/objects/Numerics/Matrix.cpp ) (view diffs)
• src/c/objects/Numerics/Matrix.h (copied) (copied from issm/trunk-jpl/src/c/objects/Numerics/Matrix.h ) (view diffs)
• src/c/objects/Numerics/Vector.cpp (copied) (copied from issm/trunk-jpl/src/c/objects/Numerics/Vector.cpp ) (view diffs)
• src/c/objects/Numerics/Vector.h (copied) (copied from issm/trunk-jpl/src/c/objects/Numerics/Vector.h ) (view diffs)
• src/c/objects/OptArgs.h (modified) (view diffs)
• src/c/objects/Params/BoolParam.cpp (modified) (view diffs)
• src/c/objects/Params/BoolParam.h (modified) (view diffs)
• src/c/objects/Params/DoubleMatArrayParam.cpp (modified) (view diffs)
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• src/c/objects/Params/DoubleMatParam.cpp (modified) (view diffs)
• src/c/objects/Params/DoubleMatParam.h (modified) (view diffs)
• src/c/objects/Params/DoubleParam.cpp (modified) (view diffs)
• src/c/objects/Params/DoubleParam.h (modified) (view diffs)
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• src/c/objects/Params/DoubleVecParam.cpp (modified) (view diffs)
• src/c/objects/Params/DoubleVecParam.h (modified) (view diffs)
• src/c/objects/Params/FileParam.cpp (modified) (view diffs)
• src/c/objects/Params/FileParam.h (modified) (view diffs)
• src/c/objects/Params/IntMatParam.cpp (modified) (view diffs)
• src/c/objects/Params/IntMatParam.h (modified) (view diffs)
• src/c/objects/Params/IntParam.cpp (modified) (view diffs)
• src/c/objects/Params/IntParam.h (modified) (view diffs)
• src/c/objects/Params/IntVecParam.cpp (modified) (view diffs)
• src/c/objects/Params/IntVecParam.h (modified) (view diffs)
• src/c/objects/Params/MatrixParam.cpp (copied) (copied from issm/trunk-jpl/src/c/objects/Params/MatrixParam.cpp ) (view diffs)
• src/c/objects/Params/MatrixParam.h (copied) (copied from issm/trunk-jpl/src/c/objects/Params/MatrixParam.h ) (view diffs)
• src/c/objects/Params/Param.h (modified) (view diffs)
• src/c/objects/Params/PetscMatParam.cpp (deleted)
• src/c/objects/Params/PetscMatParam.h (deleted)
• src/c/objects/Params/PetscVecParam.cpp (deleted)
• src/c/objects/Params/PetscVecParam.h (deleted)
• src/c/objects/Params/StringArrayParam.cpp (modified) (view diffs)
• src/c/objects/Params/StringArrayParam.h (modified) (view diffs)
• src/c/objects/Params/StringParam.cpp (modified) (view diffs)
• src/c/objects/Params/StringParam.h (modified) (view diffs)
• src/c/objects/Params/VectorParam.cpp (copied) (copied from issm/trunk-jpl/src/c/objects/Params/VectorParam.cpp ) (view diffs)
• src/c/objects/Params/VectorParam.h (copied) (copied from issm/trunk-jpl/src/c/objects/Params/VectorParam.h ) (view diffs)
• src/c/objects/Vertex.cpp (modified) (view diffs)
• src/c/objects/Vertex.h (modified) (view diffs)
• src/c/objects/objects.h (modified) (view diffs)
• src/c/shared/Alloc/alloc.cpp (modified) (view diffs)
• src/c/shared/Alloc/alloc.h (modified) (view diffs)
• src/c/shared/Elements/elements.h (modified) (view diffs)
• src/c/shared/Exceptions/Exceptions.cpp (modified) (view diffs)
• src/c/shared/Exp/DomainOutlineRead.cpp (modified) (view diffs)
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• src/c/shared/Exp/exp.h (modified) (view diffs)
• src/c/shared/Matlab (deleted)
• src/c/shared/Matrix/MatrixUtils.cpp (modified) (view diffs)
• src/c/shared/Numerics/GaussPoints.cpp (modified) (view diffs)
• src/c/shared/Numerics/OptFunc.cpp (modified) (view diffs)
• src/c/shared/Numerics/OptionsFromAnalysis.cpp (copied) (copied from issm/trunk-jpl/src/c/shared/Numerics/OptionsFromAnalysis.cpp ) (view diffs)
• src/c/shared/Numerics/PetscOptionsFromAnalysis.cpp (modified) (view diffs)
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• src/c/solutions/objectivefunction.cpp (copied) (copied from issm/trunk-jpl/src/c/solutions/objectivefunction.cpp ) (view diffs)
• src/c/solutions/objectivefunctionC.cpp (deleted)
• src/c/solutions/prognostic_core.cpp (modified) (view diffs)
• src/c/solutions/solutions.h (modified) (view diffs)
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• src/c/solutions/transient_core.cpp (modified) (view diffs)
• src/c/solvers/solver_adjoint_linear.cpp (modified) (view diffs)
• src/c/solvers/solver_linear.cpp (modified) (view diffs)
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• src/c/solvers/solver_thermal_nonlinear.cpp (modified) (view diffs)
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• src/c/toolkits/double/MatlabMatrixToDoubleMatrix.cpp (copied) (copied from issm/trunk-jpl/src/c/toolkits/double/MatlabMatrixToDoubleMatrix.cpp ) (view diffs)
• src/c/toolkits/double/MatlabVectorToDoubleVector.cpp (copied) (copied from issm/trunk-jpl/src/c/toolkits/double/MatlabVectorToDoubleVector.cpp ) (view diffs)
• src/c/toolkits/double/double.h (copied) (copied from issm/trunk-jpl/src/c/toolkits/double/double.h ) (view diffs)
• src/c/toolkits/issm (copied) (copied from issm/trunk-jpl/src/c/toolkits/issm ) (view diffs)
• src/c/toolkits/issm/SeqMat.cpp (copied) (copied from issm/trunk-jpl/src/c/toolkits/issm/SeqMat.cpp ) (view diffs)
• src/c/toolkits/issm/SeqMat.h (copied) (copied from issm/trunk-jpl/src/c/toolkits/issm/SeqMat.h ) (view diffs)
• src/c/toolkits/issm/SeqVec.cpp (copied) (copied from issm/trunk-jpl/src/c/toolkits/issm/SeqVec.cpp ) (view diffs)
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• src/c/toolkits/matlab/MatlabNArrayToNArray.cpp (modified) (view diffs)
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• src/c/toolkits/mpi/patches/DetermineLocalSize.cpp (copied) (copied from issm/trunk-jpl/src/c/toolkits/mpi/patches/DetermineLocalSize.cpp ) (view diffs)
• src/c/toolkits/mpi/patches/MPI_Boundariesfromrange.cpp (modified) (view diffs)
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• src/c/toolkits/petsc/patches/ISSMToPetscInsertMode.cpp (copied) (copied from issm/trunk-jpl/src/c/toolkits/petsc/patches/ISSMToPetscInsertMode.cpp ) (view diffs)
• src/c/toolkits/petsc/patches/ISSMToPetscMatrixType.cpp (copied) (copied from issm/trunk-jpl/src/c/toolkits/petsc/patches/ISSMToPetscMatrixType.cpp ) (view diffs)
• src/c/toolkits/petsc/patches/ISSMToPetscNormMode.cpp (copied) (copied from issm/trunk-jpl/src/c/toolkits/petsc/patches/ISSMToPetscNormMode.cpp ) (view diffs)
• src/c/toolkits/petsc/patches/MatInvert.cpp (modified) (view diffs)
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• src/c/toolkits/petsc/patches/MatlabMatrixToPetscMatrix.cpp (modified) (view diffs)
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• src/c/toolkits/petsc/patches/NewMat.cpp (modified) (view diffs)
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• src/c/toolkits/petsc/patches/PetscDetermineLocalSize.cpp (deleted)
• src/c/toolkits/petsc/patches/PetscMatrixToMatlabMatrix.cpp (modified) (view diffs)
• src/c/toolkits/petsc/patches/PetscOptionsInsertMultipleString.cpp (modified) (view diffs)
• src/c/toolkits/petsc/patches/PetscVectorToMatlabVector.cpp (modified) (view diffs)
• src/c/toolkits/petsc/patches/SerialToVec.cpp (modified) (view diffs)
• src/c/toolkits/petsc/patches/VecToMPISerial.cpp (modified) (view diffs)
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• src/c/toolkits/python (copied) (copied from issm/trunk-jpl/src/c/toolkits/python ) (view diffs)
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• src/py/classes/balancethickness.py (copied) (copied from issm/trunk-jpl/src/py/classes/balancethickness.py ) (view diffs)
• src/py/classes/basalforcings.py (copied) (copied from issm/trunk-jpl/src/py/classes/basalforcings.py ) (view diffs)
• src/py/classes/clusters (copied) (copied from issm/trunk-jpl/src/py/classes/clusters ) (view diffs)
• src/py/classes/clusters/generic.py (copied) (copied from issm/trunk-jpl/src/py/classes/clusters/generic.py ) (view diffs)
• src/py/classes/clusters/none.py (copied) (copied from issm/trunk-jpl/src/py/classes/clusters/none.py ) (view diffs)
• src/py/classes/constants.py (copied) (copied from issm/trunk-jpl/src/py/classes/constants.py ) (view diffs)
• src/py/classes/debug.py (copied) (copied from issm/trunk-jpl/src/py/classes/debug.py ) (view diffs)
• src/py/classes/diagnostic.py (copied) (copied from issm/trunk-jpl/src/py/classes/diagnostic.py ) (view diffs)
• src/py/classes/flaim.py (copied) (copied from issm/trunk-jpl/src/py/classes/flaim.py ) (view diffs)
• src/py/classes/flowequation.py (copied) (copied from issm/trunk-jpl/src/py/classes/flowequation.py ) (view diffs)
• src/py/classes/friction.py (copied) (copied from issm/trunk-jpl/src/py/classes/friction.py ) (view diffs)
• src/py/classes/geometry.py (copied) (copied from issm/trunk-jpl/src/py/classes/geometry.py ) (view diffs)
• src/py/classes/groundingline.py (copied) (copied from issm/trunk-jpl/src/py/classes/groundingline.py ) (view diffs)
• src/py/classes/hydrology.py (copied) (copied from issm/trunk-jpl/src/py/classes/hydrology.py ) (view diffs)
• src/py/classes/initialization.py (copied) (copied from issm/trunk-jpl/src/py/classes/initialization.py ) (view diffs)
• src/py/classes/inversion.py (copied) (copied from issm/trunk-jpl/src/py/classes/inversion.py ) (view diffs)
• src/py/classes/mask.py (copied) (copied from issm/trunk-jpl/src/py/classes/mask.py ) (view diffs)
• src/py/classes/materials.py (copied) (copied from issm/trunk-jpl/src/py/classes/materials.py ) (view diffs)
• src/py/classes/mesh.py (modified) (view diffs)
• src/py/classes/miscellaneous.py (copied) (copied from issm/trunk-jpl/src/py/classes/miscellaneous.py ) (view diffs)
• src/py/classes/model.py (modified) (view diffs)
• src/py/classes/pairoptions.py (copied) (copied from issm/trunk-jpl/src/py/classes/pairoptions.py ) (view diffs)
• src/py/classes/private.py (copied) (copied from issm/trunk-jpl/src/py/classes/private.py ) (view diffs)
• src/py/classes/prognostic.py (copied) (copied from issm/trunk-jpl/src/py/classes/prognostic.py ) (view diffs)
• src/py/classes/qmu.py (copied) (copied from issm/trunk-jpl/src/py/classes/qmu.py ) (view diffs)
• src/py/classes/radaroverlay.py (copied) (copied from issm/trunk-jpl/src/py/classes/radaroverlay.py ) (view diffs)
• src/py/classes/rifts.py (copied) (copied from issm/trunk-jpl/src/py/classes/rifts.py ) (view diffs)
• src/py/classes/settings.py (copied) (copied from issm/trunk-jpl/src/py/classes/settings.py ) (view diffs)
• src/py/classes/solver.py (copied) (copied from issm/trunk-jpl/src/py/classes/solver.py ) (view diffs)
• src/py/classes/steadystate.py (copied) (copied from issm/trunk-jpl/src/py/classes/steadystate.py ) (view diffs)
• src/py/classes/surfaceforcings.py (copied) (copied from issm/trunk-jpl/src/py/classes/surfaceforcings.py ) (view diffs)
• src/py/classes/thermal.py (copied) (copied from issm/trunk-jpl/src/py/classes/thermal.py ) (view diffs)
• src/py/classes/timestepping.py (copied) (copied from issm/trunk-jpl/src/py/classes/timestepping.py ) (view diffs)
• src/py/classes/transient.py (copied) (copied from issm/trunk-jpl/src/py/classes/transient.py ) (view diffs)
• src/py/classes/verbose.py (copied) (copied from issm/trunk-jpl/src/py/classes/verbose.py ) (view diffs)
• src/py/model (copied) (copied from issm/trunk-jpl/src/py/model ) (view diffs)
• src/py/model/display (copied) (copied from issm/trunk-jpl/src/py/model/display ) (view diffs)
• src/py/model/display/fielddisplay.py (copied) (copied from issm/trunk-jpl/src/py/model/display/fielddisplay.py ) (view diffs)
• src/py/model/display/fielddisplay.rest (copied) (copied from issm/trunk-jpl/src/py/model/display/fielddisplay.rest ) (view diffs)
• src/py/model/petscversion.py (copied) (copied from issm/trunk-jpl/src/py/model/petscversion.py ) (view diffs)
• src/py/model/solvers (copied) (copied from issm/trunk-jpl/src/py/model/solvers ) (view diffs)
• src/py/model/solvers/asmoptions.py (copied) (copied from issm/trunk-jpl/src/py/model/solvers/asmoptions.py ) (view diffs)
• src/py/model/solvers/iluasmoptions.py (copied) (copied from issm/trunk-jpl/src/py/model/solvers/iluasmoptions.py ) (view diffs)
• src/py/model/solvers/jacobiasmoptions.py (copied) (copied from issm/trunk-jpl/src/py/model/solvers/jacobiasmoptions.py ) (view diffs)
• src/py/model/solvers/jacobicgoptions.py (copied) (copied from issm/trunk-jpl/src/py/model/solvers/jacobicgoptions.py ) (view diffs)
• src/py/model/solvers/matlaboptions.py (copied) (copied from issm/trunk-jpl/src/py/model/solvers/matlaboptions.py ) (view diffs)
• src/py/model/solvers/mumpsoptions.py (copied) (copied from issm/trunk-jpl/src/py/model/solvers/mumpsoptions.py ) (view diffs)
• src/py/model/solvers/soroptions.py (copied) (copied from issm/trunk-jpl/src/py/model/solvers/soroptions.py ) (view diffs)
• src/py/model/solvers/stokesoptions.py (copied) (copied from issm/trunk-jpl/src/py/model/solvers/stokesoptions.py ) (view diffs)
• src/py/modules (deleted)
• src/py/utils (copied) (copied from issm/trunk-jpl/src/py/utils ) (view diffs)
• src/py/utils/OS (copied) (copied from issm/trunk-jpl/src/py/utils/OS ) (view diffs)
• src/py/utils/OS/ismumps.py (copied) (copied from issm/trunk-jpl/src/py/utils/OS/ismumps.py ) (view diffs)
• src/py/utils/Shell (copied) (copied from issm/trunk-jpl/src/py/utils/Shell ) (view diffs)
• src/py/utils/Shell/issmtier.py (copied) (copied from issm/trunk-jpl/src/py/utils/Shell/issmtier.py ) (view diffs)
• startup.m (modified) (view diffs)
• startup.py (modified) (view diffs)
• test/Archives/Archive263.mat (modified) (view diffs)
• test/Archives/Archive455.mat (copied) (copied from issm/trunk-jpl/test/Archives/Archive455.mat ) (view diffs)
• test/Archives/Archive456.mat (copied) (copied from issm/trunk-jpl/test/Archives/Archive456.mat ) (view diffs)
• test/Archives/Archive457.mat (copied) (copied from issm/trunk-jpl/test/Archives/Archive457.mat ) (view diffs)
• test/Archives/Archive458.mat (copied) (copied from issm/trunk-jpl/test/Archives/Archive458.mat ) (view diffs)
• test/Archives/Archive459.mat (copied) (copied from issm/trunk-jpl/test/Archives/Archive459.mat ) (view diffs)
• test/Archives/Archive460.mat (copied) (copied from issm/trunk-jpl/test/Archives/Archive460.mat ) (view diffs)
• test/Archives/Archive461.mat (copied) (copied from issm/trunk-jpl/test/Archives/Archive461.mat ) (view diffs)
• test/Archives/Archive462.mat (copied) (copied from issm/trunk-jpl/test/Archives/Archive462.mat ) (view diffs)
• test/Archives/Archive463.mat (copied) (copied from issm/trunk-jpl/test/Archives/Archive463.mat ) (view diffs)
• test/Archives/Archive464.mat (copied) (copied from issm/trunk-jpl/test/Archives/Archive464.mat ) (view diffs)
• test/NightlyRun (modified) (view diffs)
• test/NightlyRun/IdToName.m (modified) (view diffs)
• test/NightlyRun/runme.m (modified) (view diffs)
• test/NightlyRun/test101.py (copied) (copied from issm/trunk-jpl/test/NightlyRun/test101.py ) (view diffs)
• test/NightlyRun/test1104.m (modified) (view diffs)
• test/NightlyRun/test1105.m (modified) (view diffs)
• test/NightlyRun/test1109.m (modified) (view diffs)
• test/NightlyRun/test1110.m (modified) (view diffs)
• test/NightlyRun/test117.m (modified) (view diffs)
• test/NightlyRun/test118.m (modified) (view diffs)
• test/NightlyRun/test140.m (modified) (view diffs)
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• test/NightlyRun/test413.m (modified) (view diffs)
• test/NightlyRun/test414.m (modified) (view diffs)
• test/NightlyRun/test455.m (copied) (copied from issm/trunk-jpl/test/NightlyRun/test455.m ) (view diffs)
• test/NightlyRun/test456.m (copied) (copied from issm/trunk-jpl/test/NightlyRun/test456.m ) (view diffs)
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• test/NightlyRun/test463.m (copied) (copied from issm/trunk-jpl/test/NightlyRun/test463.m ) (view diffs)
• test/NightlyRun/test464.m (copied) (copied from issm/trunk-jpl/test/NightlyRun/test464.m ) (view diffs)
• test/NightlyRun/test529.m (modified) (view diffs)
• test/NightlyRun/test530.m (modified) (view diffs)

issm/trunk

@@ -7 +7 @@
 config.status
 configure
-doxygen
 ISSM.paf
 ISSM.ppf
 ISSM.ppf_cache
 libtool
-list
 Makefile
 Makefile.in

@@ -7 +7 @@
 config.status
 configure
-doxygen
 ISSM.paf
 ISSM.ppf
 ISSM.ppf_cache
 libtool
-list
 Makefile
 Makefile.in

issm/trunk/externalpackages/petsc

@@ -1 +1 @@
 install
+install-3.1
 src

@@ -1 +1 @@
 install
+install-3.1
 src

issm/trunk/src/mex

@@ +1 @@
+__pycache__
 Makefile
 .ignore.txt

@@ +1 @@
+__pycache__
 Makefile
 .ignore.txt

issm/trunk/test/NightlyRun

@@ +1 @@
+__pycache__
 *.tar.gz
 *.bin 
@@ -5 +6 @@
 *.errlog
 *.queue
+*.lock
+*settings*
+startup.m
+*.bat
+*.outbin
+qmu*
+*.bin

@@ +1 @@
+__pycache__
 *.tar.gz
 *.bin 
@@ -5 +6 @@
 *.errlog
 *.queue
+*.lock
+*settings*
+startup.m
+*.bat
+*.outbin
+qmu*
+*.bin

@@ -7 +7 @@
 config.status
 configure
-doxygen
 ISSM.paf
 ISSM.ppf
 ISSM.ppf_cache
 libtool
-list
 Makefile
 Makefile.in

@@ -1 +1 @@
 install
+install-3.1
 src

@@ +1 @@
+__pycache__
 Makefile
 .ignore.txt

@@ +1 @@
+__pycache__
 *.tar.gz
 *.bin 
@@ -5 +6 @@
 *.errlog
 *.queue
+*.lock
+*settings*
+startup.m
+*.bat
+*.outbin
+qmu*
+*.bin