Error running make; make install on MPICH

justinquinn That script solved my problem with Petsc/MPICH, thanks. I've gotten to the point of trying to compile ISSM, however I have encountered another error. The output I got when I tried to use make ended with these lines:

ld: file not found: @rpath/libquadmath.0.dylib for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
make[4]: *** [libISSMApi.la] Error 1
make[3]: *** [all-recursive] Error 1
make[2]: *** [all-recursive] Error 1
make[1]: *** [all-recursive] Error 1
make: *** [all] Error 2

There were also a lot of warnings prior to that, but I'm not sure whether or not they're related to the error. Here's a few examples of the type of warnings I saw a lot of in the output:
*** Warning: Linking the shared library libISSMCore.la against the
*** static library /Users/clairec/trunk/externalpackages/m1qn3/install/libddot.a is not portable!
ld: warning: could not create compact unwind for what0: stack subq instruction is too different from dwarf stack size
ld: warning: dylib (/Users/clairec/trunk/externalpackages/petsc/install/lib/libparmetis.dylib) was built for newer macOS version (12.7) than being linked (12.0)
ld: warning: dylib (/Users/clairec/trunk/externalpackages/petsc/install/lib/libscalapack.dylib) was built for newer macOS version (12.7) than being linked (12.0)
ld: warning: dylib (/Users/clairec/trunk/externalpackages/petsc/install/lib/libmetis.dylib) was built for newer macOS version (12.7) than being linked (12.0)
ld: warning: dylib (/usr/local/gfortran/lib/libgfortran.dylib) was built for newer macOS version (12.3) than being linked (12.0)
ld: warning: dylib (/usr/local/gfortran/lib/libquadmath.dylib) was built for newer macOS version (12.3) than being linked (12.0)

I've also attached the full output I got from running make.
This attempt was still using the copy of ISSM I got through SVN, but I'll try starting over from the version on github, in case that might resolve some issues. In the meantime though, I'd appreciate any suggestions for what might be causing this last error.

Thanks,
Claire

mathieumorlighem I got the same output for mpic++ --version and g++ --version and only one version of g++. Here's the specific output I got:

bash-3.2$ mpic++ --version
Apple clang version 14.0.0 (clang-1400.0.29.202)
Target: x86_64-apple-darwin21.6.0
Thread model: posix
InstalledDir: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin
bash-3.2$ g++ --version
Apple clang version 14.0.0 (clang-1400.0.29.202)
Target: x86_64-apple-darwin21.6.0
Thread model: posix
InstalledDir: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin
bash-3.2$ which -a g++
/usr/bin/g++

mathieumorlighem I have the line --with-fortran-lib="-L/usr/local/gfortran/lib -lgfortran" in my configure.sh, since /usr/local/gfortran/lib is also the correct location for the version of gfortran that I installed. I included the -L at the beginning and the -lgfortran at the end based on the example configure script, though I'm not sure what they do. I'm also not sure if /usr/local/gfortran/lib is the version of gfortran actually being used by my machine when I'm doing make. When I try which gfortran I get /usr/local/bin/gfortran which is not the version I installed, and it also isn't a directory (so there's no /usr/local/bin/gfortran/lib). I added usr/local/gfortran and usr/local/gfortran/lib to my path in my .bash_profile but still get /usr/local/bin/gfortran when I try which gfortran. Not sure if that's relevant, but I thought it could be part of the problem...
Thanks for your help so far.

mathieumorlighem mpifort -show gives:
gfortran -g -O2 -fPIC -fallow-argument-mismatch -I/Users/clairec/trunk/externalpackages/petsc/install/include -I/Users/clairec/trunk/externalpackages/petsc/install/include -L/Users/clairec/trunk/externalpackages/petsc/install/lib -lmpifort -lmpi -lpmpi

cat $ISSM_DIR/externalpackages/petsc/install/lib/petsc/conf/petscvariables | grep PETSC_EXTERNAL_LIB_BASIC gives:
SL_LINKER_LIBS = ${PETSC_EXTERNAL_LIB_BASIC}
PETSC_EXTERNAL_LIB_BASIC = -Wl,-rpath,/Users/clairec/trunk/externalpackages/petsc/install/lib -L/Users/clairec/trunk/externalpackages/petsc/install/lib -Wl,-rpath,/usr/local/Cellar/gcc/13.2.0/lib/gcc/current/gcc/x86_64-apple-darwin20/13 -L/usr/local/Cellar/gcc/13.2.0/lib/gcc/current/gcc/x86_64-apple-darwin20/13 -Wl,-rpath,/usr/local/Cellar/gcc/13.2.0/lib/gcc/current/gcc -L/usr/local/Cellar/gcc/13.2.0/lib/gcc/current/gcc -Wl,-rpath,/usr/local/Cellar/gcc/13.2.0/lib/gcc/current -L/usr/local/Cellar/gcc/13.2.0/lib/gcc/current -ldmumps -lmumps_common -lpord -lpthread -lscalapack -lflapack -lfblas -lparmetis -lmetis -lz -lmpifort -lmpi -lpmpi -lgfortran -lgcc_s.1.1 -lquadmath -lc++

mathieumorlighem I checked /usr/local/Cellar/gcc/13.2.0/lib/gcc/current and these files starting with libgfortran were present, but not libgfortran.so:

libgfortran.5.dylib
libgfortran.a
libgfortran.dylib
libgfortran.spec

I also searched /usr/local for libgfortran.so but did not find it anywhere in that directory.

justinquinn I just saw this reply, I'll try that next.