Changes between Initial Version and Version 1 of fields

Timestamp:

08/25/11 14:33:05 (14 years ago)

Author:

Mathieu Morlighem

Comment:

added template

fields

@@ +1 @@
+== mesh  ==
+
+   projection
+      lat
+      long
+      hemisphere
+
+     x
+     y
+     z
+     elements
+     dim -> rename dimension
+     numlayers -> rename numberoflayers
+     numberofelements
+     numberofnodes -> rename numberofvertices as well as nodeon...
+     edges
+
+     uppernodes
+     upperelements
+     lowerelements
+     lowernodes
+
+     numberofelements2d
+     numberofnodes2d
+     elements2d
+     x2d
+     y2d
+     z2d -> remove
+
+     extrusionexponent -> remove
+     elementonbed
+     elementonsurface
+     nodeonbed
+     nodeonsurface
+
+     nodeconnectivity
+     elementconnectivity
+     connectivity ->investigate
+
+     segments
+     segmentmarkers
+     nodeonboundary
+
+     extractednodes
+     extractedelements
+
+== geometry  ==
+     surface
+     thickness
+     bed
+     bathymetry
+
+     bed_slopex ->remove
+     bed_slopey ->remove
+     surface_slopex->remove
+     surface_slopey->remove
+
+     thickness_coeff -> delete or rename (See with John)?
+
+== mask ==
+   elementoniceshelf -> rename elementonwater
+   elementonicesheet -> rename elementonground
+   elementonwater -> rename elementelementonground
+   nodeoniceshelf
+   nodeonicesheet
+   nodeonwater
+
+   elementongroundedice
+   elementonfloatingice
+   elementonwater
+
+
+== rifts ==
+   rifts
+   numrifts
+   riftinfo -> should be removed (constructed by marshall)
+   riftproperties
+
+== materials ==
+   rho_ice
+   rho_water
+   rho_firn -> remove
+   heatcapacity
+   latentheat
+   thermalconductivity
+   meltingpoint
+   beta
+   mixed_layer_capacity
+   thermal_exchange_velocity
+   rheology_B
+   rheology_n
+   rheology_law
+
+== friction ==
+   drag_type -> delete
+   drag_coefficient
+   drag_p
+   drag_q
+
+== surfaceforcings ==
+   surface_accumulation_rate -> remove all surface_
+   surface_ablation_rate
+   surface_mass_balance
+
+== basalforcings ==
+   basal_melting_rate -> remove basal_*
+   basal_melting_rate_correction
+   basal_melting_rate_correction_apply -> remove (correction 0 has the same effect)
+   geothermalflux
+
+== flowequation ==
+   private:
+      ishutter
+      ismacayealpattyn
+      isstokes
+
+      elements_type -> change to element_equation
+      vertices_type -> rename to vertex_equation
+      borderstokes -> rename vertex_boundary_equation
+
+      elementonhutter ->delete
+      elementonmacayeal->delete
+      elementonpattyn->delete
+      elementonstokes->delete
+
+      nodeonhutter ->delete
+      nodeonmacayeal->delete
+      nodeonpattyn->delete
+      nodeonstokes->delete
+      elements_type2d -> delete
+      vertices_type2d -> delete
+
+== initialization ==
+   vx
+   vy
+   vz
+   vel
+   pressure
+   temperature
+   watercolumn
+   waterfraction
+
+
+== diagnostic ==
+   spcvx
+   spcvy
+   spcvz
+   stokesreconditioning
+   shelf_dampening
+   viscosity_overshoot
+   pressureload -> rename icefront?
+   diagnostic_ref -> rename referential?
+   penalties -> rename vertex_pairing
+   penalty_offset -> rename penalty_factor and change to absolute value
+
+   eps_res -> rename following PETSc: restol
+   eps_rel -> rename following PETSc: reltol
+   eps_abs-> rename following PETSc:  abstol
+   max_nonlinear_iterations -> rename maxiter
+
+   penalty_lock -> rename rift_penalty_lock
+   min_mechanical_constraints -> rename  rift_penalty_threshold
+   requested_outputs
+
+== thermal ==
+   spctemperature
+   penalty_melting -> delete
+   min_thermal_constraints -> rename thermal_penalty_threshold
+   artificial_diffusivity -> rename stabilization
+   max_nonlinear_iterations -> rename maxiter
+   stabilize_constraints -> rename thermal_penalty_lock
+   penalty_offset -> rename penalty_factor and change to absolute value
+   requested_outputs
+
+== prognostic ==
+   spcthickness
+   hydrostatic_adjustment
+   artificial_diffusivity -> rename stabilization
+   prognostic_DG -> should be merged with stabilization
+   penalties -> rename vertex_pairing
+   penalty_offset -> rename penalty_factor and change to absolute value
+   requested_outputs
+
+== balancethickness ==
+   spcthickness
+   dhdt -> rename thickening_rate
+   artificial_diffusivity -> rename stabilization
+   requested_outputs
+
+== steadystate ==
+   eps_rel -> rename following PETSc: reltol
+   max_steadystate_iterations -> rename maxiter
+   requested_outputs
+
+== transient ==
+   isdiagnostic
+   isprognostic
+   isthermal
+   idsgroundingline -> add
+   requested_outputs
+
+== goundingline  ==
+   groundingline_migration -> rename migration_type
+   groundingline_melting_rate -> rename melting_rate
+
+== hydrology ==
+   spwatercolumn
+   hydro_n -> remove all hydro_
+   hydro_CR
+   hydro_p
+   hydro_q
+   hydro_kn
+
+== inversion ==
+   private:
+      num_control_type -> num_control_parameters
+      num_cm_responses -> rename num_cost_functions
+
+   control_analysis ->rename iscontrol
+   control_type -> rename control_parameters?
+   cm_responses -> rename cost_functions
+   cm_gradient -> rename gradient_only
+   weights -> rename cost_functions_coefficients
+
+   cm_min -> min_parameters
+   cm_max -> max_parameters
+
+   nsteps
+   maxiter -> rename maxiter_per_step
+   tolx    -> hardcoded,delete
+   optscal -> gradient_scaling
+   cm_jump -> step_threshold
+   eps_cm  -> misfit_threshold
+
+   epsvel  -> hardcoded, delete
+   meanvel -> hardcoded, delete
+
+   vx_obs
+   vy_obs
+   vel_obs
+   thickness_obs
+
+== qmu ==
+   variables
+   responses
+   qmu_method -> remove all qmu_
+   qmu_params
+   dakotaresults ->results
+   dakotain ->check
+   dakotaout ->check
+   dakotadat ->check
+   qmu_analysis -> isqmu
+   part ->partition
+   npart -> numberofpartitions
+   numberofvariables
+   numberofresponses
+   variabledescriptors
+   responsedescriptors
+   qmu_mass_flux_profile_directory
+   qmu_mass_flux_profiles
+   qmu_mass_flux_segments
+   qmu_relax -> investigate
+   qmu_save_femmodel -> trash
+
+   adjacency
+   vwgt -> vertex_weight
+
+== flaim ==
+   fm_tracks -> remove all fm_
+     fm_flightreqs
+     fm_criterion
+     fm_gridsatequator
+     fm_usevalueordering
+     fm_split_antimeridian
+     fm_solution
+     fm_quality
+
+
+== verbose  ==
+   -> already exists
+
+== cluster ==
+   waitonlock -> cluster dependent to be added to all cluster classes
+   -> already exists
+
+== timestepping ==
+   dt ->time_step
+   ndt-> rename final_time
+   time_adapt -> "cfl" "none"
+   adaptative_cfl -> remove
+   cfl_coefficient
+== results ==
+   results_on_vertices
+   output_frequency
+   outlog
+   errlog
+     + all model results ??? (DiagnosticSolution and others?)
+
+== solver ==
+petscoptions -> could become the class itself
+
+== debug ==
+   gprof
+   mem_debug -> rename valgrind
+   memoryleaks -> delete
+
+== constants ==
+   %not material dependent
+g
+yts
+referencetemperature
+
+== settings ==
+io_gather
+sparsity
+lowmem
+
+== radaroverlay ==
+   sarpwr %error message if database does not exist
+   sarxm
+   sarym
+
+== miscelaneous  ==
+   notes
+   name
+   dummy
+
+== private  ==
+   counter -> not needed
+   runtimename
+   runmefile -> erase
+   inputfilename -> is it really needed? it is just runtimename.bon
+   outputfilename -> same
+   solution_type -> erase and get this from the outbin
+   bamg
+
+== DELETED FIELDS ==
+mesh_domainoutline -> remove
+mesh_riftoutline -> remove
+mesh_resolution -> remove
+domainoutline -> remove
+riftoutline -> remove
+iceshelfoutline ->remove
+icesheetoutline -> remove
+wateroutline -> remove
+parameterfile -> remove
+
+vx_obs_raw -> remove (should be in dummy)
+vy_obs_raw -> remove (should be in dummy)
+vel_obs_raw -> remove (should be in dummy)
+vx_bal -> remove (should be in dummy)
+vy_bal -> remove (should be in dummy)
+vel_bal -> remove (should be in dummy)
+
+forcings -> delete
+minh -> remove and put into prognostic
+firn_layer -> remove (never used)
+deltaH -> remove (unused)
+DeltaH -> remove (unused)
+deltaT -> remove (unused)
+DeltaT -> remove (unused)
+timeacc -> remove (unused)
+timedec -> remove (unused)
+observed_temperature -> remove
+repository -> remove (out of core never used)
+loadresults -> remove (should be an option of solve: md=solve(md,DiagnosticSolutionEnum,'loadonly',1))
+
+element_debug -> remove
+element_debugid -> remove
+
+viscousheating -> remove (that's a model result)
+pressure_elem -> remove (that's a model result)
+stress-> remove (that's a model result)
+stress_surface-> remove (that's a model result)
+stress_bed-> remove (that's a model result)
+deviatoricstress-> remove (that's a model result)
+strainrate-> remove (that's a model result)
+
+alloc_cleanup -> remove -> and put in cosmos cleanup
+mask -> delete?