mesh

projection

lat long hemisphere

x y z elements dim -> rename dimension numlayers -> rename numberoflayers numberofelements numberofnodes -> rename numberofvertices as well as nodeon... edges

uppernodes upperelements lowerelements lowernodes

numberofelements2d numberofnodes2d elements2d x2d y2d z2d -> remove

extrusionexponent -> remove elementonbed elementonsurface nodeonbed nodeonsurface

nodeconnectivity elementconnectivity connectivity ->investigate

segments segmentmarkers nodeonboundary

extractednodes extractedelements

geometry

surface thickness bed bathymetry

bed_slopex ->remove bed_slopey ->remove surface_slopex->remove surface_slopey->remove

thickness_coeff -> delete or rename (See with John)?

mask

elementoniceshelf -> rename elementonwater elementonicesheet -> rename elementonground elementonwater -> rename elementelementonground nodeoniceshelf nodeonicesheet nodeonwater

elementongroundedice elementonfloatingice elementonwater

rifts

rifts numrifts riftinfo -> should be removed (constructed by marshall) riftproperties

materials

rho_ice rho_water rho_firn -> remove heatcapacity latentheat thermalconductivity meltingpoint beta mixed_layer_capacity thermal_exchange_velocity rheology_B rheology_n rheology_law

friction

drag_type -> delete drag_coefficient drag_p drag_q

surfaceforcings

surface_accumulation_rate -> remove all surface_ surface_ablation_rate surface_mass_balance

basalforcings

basal_melting_rate -> remove basal_* basal_melting_rate_correction basal_melting_rate_correction_apply -> remove (correction 0 has the same effect) geothermalflux

flowequation

private:

ishutter ismacayealpattyn isstokes

elements_type -> change to element_equation vertices_type -> rename to vertex_equation borderstokes -> rename vertex_boundary_equation

elementonhutter ->delete elementonmacayeal->delete elementonpattyn->delete elementonstokes->delete

nodeonhutter ->delete nodeonmacayeal->delete nodeonpattyn->delete nodeonstokes->delete elements_type2d -> delete vertices_type2d -> delete

initialization

vx vy vz vel pressure temperature watercolumn waterfraction

diagnostic

spcvx spcvy spcvz stokesreconditioning shelf_dampening viscosity_overshoot pressureload -> rename icefront? diagnostic_ref -> rename referential? penalties -> rename vertex_pairing penalty_offset -> rename penalty_factor and change to absolute value

eps_res -> rename following PETSc: restol eps_rel -> rename following PETSc: reltol eps_abs-> rename following PETSc: abstol max_nonlinear_iterations -> rename maxiter

penalty_lock -> rename rift_penalty_lock min_mechanical_constraints -> rename rift_penalty_threshold requested_outputs

thermal

spctemperature penalty_melting -> delete min_thermal_constraints -> rename thermal_penalty_threshold artificial_diffusivity -> rename stabilization max_nonlinear_iterations -> rename maxiter stabilize_constraints -> rename thermal_penalty_lock penalty_offset -> rename penalty_factor and change to absolute value requested_outputs

prognostic

spcthickness hydrostatic_adjustment artificial_diffusivity -> rename stabilization prognostic_DG -> should be merged with stabilization penalties -> rename vertex_pairing penalty_offset -> rename penalty_factor and change to absolute value requested_outputs

balancethickness

spcthickness dhdt -> rename thickening_rate artificial_diffusivity -> rename stabilization requested_outputs

steadystate

eps_rel -> rename following PETSc: reltol max_steadystate_iterations -> rename maxiter requested_outputs

transient

isdiagnostic isprognostic isthermal idsgroundingline -> add requested_outputs

goundingline

groundingline_migration -> rename migration_type groundingline_melting_rate -> rename melting_rate

hydrology

spwatercolumn hydro_n -> remove all hydro_ hydro_CR hydro_p hydro_q hydro_kn

inversion

private:

num_control_type -> num_control_parameters num_cm_responses -> rename num_cost_functions

control_analysis ->rename iscontrol control_type -> rename control_parameters? cm_responses -> rename cost_functions cm_gradient -> rename gradient_only weights -> rename cost_functions_coefficients

cm_min -> min_parameters cm_max -> max_parameters

nsteps maxiter -> rename maxiter_per_step tolx -> hardcoded,delete optscal -> gradient_scaling cm_jump -> step_threshold eps_cm -> misfit_threshold

epsvel -> hardcoded, delete meanvel -> hardcoded, delete

vx_obs vy_obs vel_obs thickness_obs

qmu

variables responses qmu_method -> remove all qmu_ qmu_params dakotaresults ->results dakotain ->check dakotaout ->check dakotadat ->check qmu_analysis -> isqmu part ->partition npart -> numberofpartitions numberofvariables numberofresponses variabledescriptors responsedescriptors qmu_mass_flux_profile_directory qmu_mass_flux_profiles qmu_mass_flux_segments qmu_relax -> investigate qmu_save_femmodel -> trash

adjacency vwgt -> vertex_weight

flaim

fm_tracks -> remove all fm_

fm_flightreqs fm_criterion fm_gridsatequator fm_usevalueordering fm_split_antimeridian fm_solution fm_quality

verbose

-> already exists

cluster

waitonlock -> cluster dependent to be added to all cluster classes -> already exists

timestepping

dt ->time_step ndt-> rename final_time time_adapt -> "cfl" "none" adaptative_cfl -> remove cfl_coefficient

results

results_on_vertices output_frequency outlog errlog

+ all model results ??? (DiagnosticSolution and others?)

solver

petscoptions -> could become the class itself

debug

gprof mem_debug -> rename valgrind memoryleaks -> delete

constants

%not material dependent

g yts referencetemperature

settings

io_gather sparsity lowmem

radaroverlay

sarpwr %error message if database does not exist sarxm sarym

miscelaneous

notes name dummy

private

counter -> not needed runtimename runmefile -> erase inputfilename -> is it really needed? it is just runtimename.bon outputfilename -> same solution_type -> erase and get this from the outbin bamg

DELETED FIELDS

mesh_domainoutline -> remove mesh_riftoutline -> remove mesh_resolution -> remove domainoutline -> remove riftoutline -> remove iceshelfoutline ->remove icesheetoutline -> remove wateroutline -> remove parameterfile -> remove

vx_obs_raw -> remove (should be in dummy) vy_obs_raw -> remove (should be in dummy) vel_obs_raw -> remove (should be in dummy) vx_bal -> remove (should be in dummy) vy_bal -> remove (should be in dummy) vel_bal -> remove (should be in dummy)

forcings -> delete minh -> remove and put into prognostic firn_layer -> remove (never used) deltaH -> remove (unused) DeltaH -> remove (unused) deltaT -> remove (unused) DeltaT -> remove (unused) timeacc -> remove (unused) timedec -> remove (unused) observed_temperature -> remove repository -> remove (out of core never used) loadresults -> remove (should be an option of solve: md=solve(md,DiagnosticSolutionEnum,'loadonly',1))

element_debug -> remove element_debugid -> remove

viscousheating -> remove (that's a model result) pressure_elem -> remove (that's a model result) stress-> remove (that's a model result) stress_surface-> remove (that's a model result) stress_bed-> remove (that's a model result) deviatoricstress-> remove (that's a model result) strainrate-> remove (that's a model result)

alloc_cleanup -> remove -> and put in cosmos cleanup mask -> delete?