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Changeset 6088
- Timestamp:
- 09/29/10 18:27:26 (14 years ago)
- Location:
- issm/trunk
- Files:
-
- 81 edited
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configs/altix64/altix64.sh.petsc2 (modified) (1 diff)
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configs/altix64/altix64.sh.petsc3 (modified) (1 diff)
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configs/linux32-cosmos/linux32.sh.petsc2 (modified) (1 diff)
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configs/linux32-cosmos/linux32.sh.petsc3 (modified) (1 diff)
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configs/linux64/linux64.sh.petsc2 (modified) (1 diff)
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configs/linux64/linux64.sh.petsc3 (modified) (1 diff)
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configs/macosx32/macosx32.sh.petsc2 (modified) (1 diff)
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configs/macosx32/macosx32.sh.petsc3 (modified) (1 diff)
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configs/macosx64/macosx64.sh.petsc2 (modified) (1 diff)
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configs/macosx64/macosx64.sh.petsc3 (modified) (1 diff)
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configs/pleiades/pleiades.sh.petsc2 (modified) (1 diff)
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configs/pleiades/pleiades.sh.petsc3 (modified) (1 diff)
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configs/winxp32/winxp32.sh.petsc2 (modified) (1 diff)
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configs/winxp32/winxp32.sh.petsc3 (modified) (1 diff)
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cron/README (modified) (1 diff)
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cron/configs/linux64_larour (modified) (2 diffs)
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cron/configs/linux64_morlighem_daily (modified) (2 diffs)
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cron/configs/linux64_morlighem_nightly (modified) (2 diffs)
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cron/configs/linux64_morlighem_validation (modified) (2 diffs)
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cron/configs/linux64_seroussi (modified) (2 diffs)
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cron/configs/macosx32_seroussi (modified) (2 diffs)
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cron/configs/winxp32_larour (modified) (2 diffs)
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cron/nightlyrun.sh (modified) (18 diffs)
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devpackages/autoconf/install.sh (modified) (1 diff)
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devpackages/automake/install.sh (modified) (1 diff)
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doc/issmdoc.m (modified) (2 diffs)
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etc/environment.csh (modified) (2 diffs)
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etc/environment.sh (modified) (4 diffs)
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etc/environment_variables.csh (modified) (2 diffs)
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etc/environment_variables.sh (modified) (3 diffs)
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externalpackages/README (modified) (1 diff)
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scripts/archive.sh (modified) (2 diffs)
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scripts/automakererun.sh (modified) (1 diff)
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scripts/createlinks.sh (modified) (2 diffs)
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scripts/dailyrun.sh (modified) (8 diffs)
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scripts/eraselinks.sh (modified) (2 diffs)
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scripts/getloc.sh (modified) (1 diff)
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scripts/quickinstall.sh (modified) (3 diffs)
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scripts/report.sh (modified) (1 diff)
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scripts/run.sh (modified) (4 diffs)
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scripts/windowsbuild.sh (modified) (1 diff)
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src/c/modules/MeshProfileIntersectionx/SegmentIntersect.cpp (modified) (1 diff)
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src/m/model/modeldefault/modeldefault_process.m (modified) (2 diffs)
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src/m/model/modis.m (modified) (2 diffs)
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src/m/model/multiplequeue/BuildMultipleQueueingScriptGeneric.m (modified) (1 diff)
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src/m/model/plot/applyoptions.m (modified) (1 diff)
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src/m/model/plot/plotmodel.m (modified) (1 diff)
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src/m/model/radarpower.m (modified) (2 diffs)
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src/m/model/solve.m (modified) (1 diff)
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src/m/qmu/postqmu.m (modified) (1 diff)
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src/m/qmu/preqmu.m (modified) (1 diff)
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src/m/utils/DataProcessing/TracksToMatrix.m (modified) (3 diffs)
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src/m/utils/Mesh/BamgCall.m (modified) (1 diff)
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src/m/utils/Mesh/BamgCallFromMetric.m (modified) (1 diff)
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src/m/utils/Mesh/YamsCall.m (modified) (1 diff)
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src/m/utils/OS/clearall.m (modified) (1 diff)
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src/m/utils/OS/issmscpin.m (modified) (2 diffs)
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src/m/utils/OS/issmscpout.m (modified) (2 diffs)
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src/m/utils/OS/issmssh.m (modified) (1 diff)
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startup.m (modified) (3 diffs)
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test/NightlyRun/runme.m (modified) (5 diffs)
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test/NightlyRun/test1101.m (modified) (6 diffs)
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test/NightlyRun/test1102.m (modified) (6 diffs)
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test/NightlyRun/test1103.m (modified) (5 diffs)
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test/NightlyRun/test1105.m (modified) (6 diffs)
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test/NightlyRun/test1107.m (modified) (5 diffs)
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test/NightlyRun/test1109.m (modified) (1 diff)
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test/NightlyRun/test120.m (modified) (1 diff)
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test/NightlyRun/test1201.m (modified) (1 diff)
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test/NightlyRun/test1202.m (modified) (1 diff)
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test/NightlyRun/test1203.m (modified) (1 diff)
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test/NightlyRun/test1205.m (modified) (1 diff)
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test/NightlyRun/test1206.m (modified) (1 diff)
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test/NightlyRun/test1207.m (modified) (1 diff)
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test/NightlyRun/test1301.m (modified) (1 diff)
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test/NightlyRun/test1302.m (modified) (1 diff)
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test/NightlyRun/test1303.m (modified) (1 diff)
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test/NightlyRun/test1304.m (modified) (1 diff)
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test/NightlyRun/test1401.m (modified) (6 diffs)
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test/NightlyRun/test1402.m (modified) (7 diffs)
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test/NightlyRun/test218.m (modified) (1 diff)
Legend:
- Unmodified
- Added
- Removed
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issm/trunk/configs/altix64/altix64.sh.petsc2
r3225 r6088 1 1 #!/bin/csh 2 2 3 ./configure --prefix=$ISSM_ DIR --with-serial=no --with-metis-dir=$ISSM_DIR/externalpackages/metis/install --with-petsc-dir=$ISSM_DIR/externalpackages/petsc/install --with-mpi-include=/usr/include --with-mpi-lib="-L/usr/lib -lmpi" --with-petsc-arch=$ISSM_ARCH --with-dakota-dir=$ISSM_DIR/externalpackages/dakota/install --with-mkl-dir=/opt/intel/mkl/9.1.023/lib/64 --with-triangle-dir=$ISSM_DIR/externalpackages/triangle/install --with-plapack-lib="-L$ISSM_DIR/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/$ISSM_ARCH -lPLAPACK" --with-plapack-include="-I$ISSM_DIR/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/$ISSM_ARCH/INCLUDE"--with-mumps-dir=$ISSM_DIR/externalpackages/petsc/install/externalpackages/MUMPS_4.6.3/$ISSM_ARCH/ --with-scalapack-dir=$ISSM_DIR/externalpackages/petsc/install/externalpackages/SCALAPACK/$ISSM_ARCH/ --with-blacs-dir=$ISSM_DIR/externalpackages/petsc/install/externalpackages/blacs-dev/$ISSM_ARCH --with-graphics-lib=/usr/X11R6/lib/libX11.so --with-petsc-version=23 ./configure --prefix=$ISSM_TIER --with-serial=no --with-metis-dir=$ISSM_TIER/externalpackages/metis/install --with-petsc-dir=$ISSM_TIER/externalpackages/petsc/install --with-mpi-include=/usr/include --with-mpi-lib="-L/usr/lib -lmpi" --with-petsc-arch=$ISSM_ARCH --with-dakota-dir=$ISSM_TIER/externalpackages/dakota/install --with-mkl-dir=/opt/intel/mkl/9.1.023/lib/64 --with-triangle-dir=$ISSM_TIER/externalpackages/triangle/install --with-plapack-lib="-L$ISSM_TIER/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/$ISSM_ARCH -lPLAPACK" --with-plapack-include="-I$ISSM_TIER/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/$ISSM_ARCH/INCLUDE"--with-mumps-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/MUMPS_4.6.3/$ISSM_ARCH/ --with-scalapack-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/SCALAPACK/$ISSM_ARCH/ --with-blacs-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/blacs-dev/$ISSM_ARCH --with-graphics-lib=/usr/X11R6/lib/libX11.so --with-petsc-version=2 -
issm/trunk/configs/altix64/altix64.sh.petsc3
r3225 r6088 1 1 #!/bin/csh 2 2 3 ./configure --prefix=$ISSM_ DIR --with-serial=no --with-metis-dir=$ISSM_DIR/externalpackages/metis/install --with-petsc-dir=$ISSM_DIR/externalpackages/petsc/install --with-mpi-include=/usr/include --with-mpi-lib="-L/usr/lib -lmpi" --with-petsc-arch=$ISSM_ARCH --with-dakota-dir=$ISSM_DIR/externalpackages/dakota/install --with-mkl-dir=/opt/intel/mkl/9.1.023/lib/64 --with-triangle-dir=$ISSM_DIR/externalpackages/triangle/install --with-plapack-lib="-L$ISSM_DIR/externalpackages/petsc/install/$ISSM_ARCH -lPLAPACK" --with-plapack-include="-I$ISSM_DIR/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/$ISSM_ARCH/INCLUDE" --with-mumps-dir=$ISSM_DIR/externalpackages/petsc/install/$ISSM_ARCH/ --with-scalapack-dir=$ISSM_DIR/externalpackages/petsc/install/$ISSM_ARCH/ --with-blacs-dir=$ISSM_DIR/externalpackages/petsc/install/$ISSM_ARCH --with-graphics-lib=/usr/X11R6/lib/libX11.so --with-petsc-version=33 ./configure --prefix=$ISSM_TIER --with-serial=no --with-metis-dir=$ISSM_TIER/externalpackages/metis/install --with-petsc-dir=$ISSM_TIER/externalpackages/petsc/install --with-mpi-include=/usr/include --with-mpi-lib="-L/usr/lib -lmpi" --with-petsc-arch=$ISSM_ARCH --with-dakota-dir=$ISSM_TIER/externalpackages/dakota/install --with-mkl-dir=/opt/intel/mkl/9.1.023/lib/64 --with-triangle-dir=$ISSM_TIER/externalpackages/triangle/install --with-plapack-lib="-L$ISSM_TIER/externalpackages/petsc/install/$ISSM_ARCH -lPLAPACK" --with-plapack-include="-I$ISSM_TIER/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/$ISSM_ARCH/INCLUDE" --with-mumps-dir=$ISSM_TIER/externalpackages/petsc/install/$ISSM_ARCH/ --with-scalapack-dir=$ISSM_TIER/externalpackages/petsc/install/$ISSM_ARCH/ --with-blacs-dir=$ISSM_TIER/externalpackages/petsc/install/$ISSM_ARCH --with-graphics-lib=/usr/X11R6/lib/libX11.so --with-petsc-version=3 -
issm/trunk/configs/linux32-cosmos/linux32.sh.petsc2
r3225 r6088 1 1 #!/bin/csh 2 2 3 ./configure --prefix=$ISSM_ DIR --with-serial=no --with-metis-dir=$ISSM_DIR/externalpackages/metis/install --with-petsc-dir=$ISSM_DIR/externalpackages/petsc/install --with-mpi-include=/opt/mpich/gm/intel10.1/include --with-mpi-lib="-L/opt/mpich/gm/intel10.1/lib -lmpich -L/usr/local/gm/lib/ -lgm -lpthread -lrt" --with-petsc-arch=$ISSM_ARCH --with-mkl-dir=/opt/intel/mkl/10.0.5.025/lib/32/ --with-plapack-lib="-L$ISSM_DIR/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/$ISSM_ARCH -lPLAPACK" --with-plapack-include="-I$ISSM_DIR/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/$ISSM_ARCH/INCLUDE" --with-mumps-dir=$ISSM_DIR/externalpackages/petsc/install/externalpackages/MUMPS_4.6.3/$ISSM_ARCH/ --with-scalapack-dir=$ISSM_DIR/externalpackages/petsc/install/externalpackages/SCALAPACK/$ISSM_ARCH/ --with-blacs-dir=$ISSM_DIR/externalpackages/petsc/install/externalpackages/blacs-dev/$ISSM_ARCH --with-vendor=intel-linux --with-graphics-lib=/usr/X11R6/lib/libX11.so --with-petsc-version=23 ./configure --prefix=$ISSM_TIER --with-serial=no --with-metis-dir=$ISSM_TIER/externalpackages/metis/install --with-petsc-dir=$ISSM_TIER/externalpackages/petsc/install --with-mpi-include=/opt/mpich/gm/intel10.1/include --with-mpi-lib="-L/opt/mpich/gm/intel10.1/lib -lmpich -L/usr/local/gm/lib/ -lgm -lpthread -lrt" --with-petsc-arch=$ISSM_ARCH --with-mkl-dir=/opt/intel/mkl/10.0.5.025/lib/32/ --with-plapack-lib="-L$ISSM_TIER/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/$ISSM_ARCH -lPLAPACK" --with-plapack-include="-I$ISSM_TIER/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/$ISSM_ARCH/INCLUDE" --with-mumps-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/MUMPS_4.6.3/$ISSM_ARCH/ --with-scalapack-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/SCALAPACK/$ISSM_ARCH/ --with-blacs-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/blacs-dev/$ISSM_ARCH --with-vendor=intel-linux --with-graphics-lib=/usr/X11R6/lib/libX11.so --with-petsc-version=2 -
issm/trunk/configs/linux32-cosmos/linux32.sh.petsc3
r3225 r6088 1 1 #!/bin/csh 2 2 3 ./configure --prefix=$ISSM_ DIR --with-serial=no --with-metis-dir=$ISSM_DIR/externalpackages/metis/install --with-petsc-dir=$ISSM_DIR/externalpackages/petsc/install --with-mpi-include=/opt/mpich/gm/intel10.1/include --with-mpi-lib="-L/opt/mpich/gm/intel10.1/lib -lmpich -L/usr/local/gm/lib/ -lgm -lpthread -lrt" --with-petsc-arch=$ISSM_ARCH --with-mkl-dir=/opt/intel/mkl/10.0.5.025/lib/32/ --with-plapack-dir="-L$ISSM_DIR/externalpackages/petsc/install/$ISSM_ARCH -lPLAPACK" --with-plapack-include="-I$ISSM_DIR/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/$ISSM_ARCH/INCLUDE" --with-mumps-dir=$ISSM_DIR/externalpackages/petsc/install/$ISSM_ARCH/ --with-scalapack-dir=$ISSM_DIR/externalpackages/petsc/install/$ISSM_ARCH/ --with-blacs-dir=$ISSM_DIR/externalpackages/petsc/install/$ISSM_ARCH --with-vendor=intel-linux --with-graphics-lib=/usr/X11R6/lib/libX11.so --with-petsc-version=33 ./configure --prefix=$ISSM_TIER --with-serial=no --with-metis-dir=$ISSM_TIER/externalpackages/metis/install --with-petsc-dir=$ISSM_TIER/externalpackages/petsc/install --with-mpi-include=/opt/mpich/gm/intel10.1/include --with-mpi-lib="-L/opt/mpich/gm/intel10.1/lib -lmpich -L/usr/local/gm/lib/ -lgm -lpthread -lrt" --with-petsc-arch=$ISSM_ARCH --with-mkl-dir=/opt/intel/mkl/10.0.5.025/lib/32/ --with-plapack-dir="-L$ISSM_TIER/externalpackages/petsc/install/$ISSM_ARCH -lPLAPACK" --with-plapack-include="-I$ISSM_TIER/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/$ISSM_ARCH/INCLUDE" --with-mumps-dir=$ISSM_TIER/externalpackages/petsc/install/$ISSM_ARCH/ --with-scalapack-dir=$ISSM_TIER/externalpackages/petsc/install/$ISSM_ARCH/ --with-blacs-dir=$ISSM_TIER/externalpackages/petsc/install/$ISSM_ARCH --with-vendor=intel-linux --with-graphics-lib=/usr/X11R6/lib/libX11.so --with-petsc-version=3 -
issm/trunk/configs/linux64/linux64.sh.petsc2
r5883 r6088 1 1 #!/bin/sh 2 2 3 ./configure --prefix=$ISSM_ DIR --with-matlab-dir=$MATLAB_DIR --with-triangle-dir=$ISSM_DIR/externalpackages/triangle/install --with-metis-dir=$ISSM_DIR/externalpackages/metis/install --with-petsc-dir=$ISSM_DIR/externalpackages/petsc/install --with-mpi-include=$ISSM_DIR/externalpackages/mpich2/install/include --with-mpi-lib="-L$ISSM_DIR/externalpackages/mpich2/install/lib/ -lmpich" --with-petsc-arch=$ISSM_ARCH --with-dakota-dir=$ISSM_DIR/externalpackages/dakota/install --with-blas-lapack-dir=$ISSM_DIR/externalpackages/petsc/install/externalpackages/fblaslapack/$ISSM_ARCH --with-plapack-lib="-L$ISSM_DIR/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/$ISSM_ARCH -lPLAPACK" --with-plapack-include="-I$ISSM_DIR/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/$ISSM_ARCH/INCLUDE" --with-blacs-dir=$ISSM_DIR/externalpackages/petsc/install/externalpackages/blacs-dev/$ISSM_ARCH --with-scalapack-dir=$ISSM_DIR/externalpackages/petsc/install/externalpackages/SCALAPACK/$ISSM_ARCH --with-mumps-dir=$ISSM_DIR/externalpackages/petsc/install/externalpackages/MUMPS_4.6.3/$ISSM_ARCH --with-fortran-lib="-L/usr/lib/gcc/x86_64-redhat-linux/4.1.1/ -lgfortran" --with-graphics-lib=/usr/lib64/libX11.so --with-cxxoptflags="-march=opteron -O2" --with-numthreads=32 --with-petsc-version=2 --with-scotch-dir=$ISSM_DIR/externalpackages/scotch/install --with-chaco-dir=$ISSM_DIR/externalpackages/chaco/install --enable-debugging3 ./configure --prefix=$ISSM_TIER --with-matlab-dir=$MATLAB_DIR --with-triangle-dir=$ISSM_TIER/externalpackages/triangle/install --with-metis-dir=$ISSM_TIER/externalpackages/metis/install --with-petsc-dir=$ISSM_TIER/externalpackages/petsc/install --with-mpi-include=$ISSM_TIER/externalpackages/mpich2/install/include --with-mpi-lib="-L$ISSM_TIER/externalpackages/mpich2/install/lib/ -lmpich" --with-petsc-arch=$ISSM_ARCH --with-dakota-dir=$ISSM_TIER/externalpackages/dakota/install --with-blas-lapack-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/fblaslapack/$ISSM_ARCH --with-plapack-lib="-L$ISSM_TIER/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/$ISSM_ARCH -lPLAPACK" --with-plapack-include="-I$ISSM_TIER/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/$ISSM_ARCH/INCLUDE" --with-blacs-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/blacs-dev/$ISSM_ARCH --with-scalapack-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/SCALAPACK/$ISSM_ARCH --with-mumps-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/MUMPS_4.6.3/$ISSM_ARCH --with-fortran-lib="-L/usr/lib/gcc/x86_64-redhat-linux/4.1.1/ -lgfortran" --with-graphics-lib=/usr/lib64/libX11.so --with-cxxoptflags="-march=opteron -O2" --with-numthreads=32 --with-petsc-version=2 --with-scotch-dir=$ISSM_TIER/externalpackages/scotch/install --with-chaco-dir=$ISSM_TIER/externalpackages/chaco/install --enable-debugging -
issm/trunk/configs/linux64/linux64.sh.petsc3
r3223 r6088 1 1 #!/bin/sh 2 2 3 ./configure --prefix=$ISSM_ DIR --with-matlab-dir=$MATLAB_DIR --with-triangle-dir=$ISSM_DIR/externalpackages/triangle/install --with-metis-dir=$ISSM_DIR/externalpackages/metis/install --with-petsc-dir=$ISSM_DIR/externalpackages/petsc/install --with-petsc-version=3 --with-mpi-include=$ISSM_DIR/externalpackages/mpich2/install/include --with-mpi-lib="-L$ISSM_DIR/externalpackages/mpich2/install/lib/ -lmpich" --with-petsc-arch=$ISSM_ARCH --with-dakota-dir=$ISSM_DIR/externalpackages/dakota/install --with-blas-lapack-dir=$ISSM_DIR/externalpackages/petsc/install/$ISSM_ARCH --with-plapack-lib="-L $ISSM_DIR/externalpackages/petsc/install/$ISSM_ARCH -lPLAPACK" --with-plapack-include="-I $ISSM_DIR/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/INCLUDE" --with-blacs-dir=$ISSM_DIR/externalpackages/petsc/install/$ISSM_ARCH --with-scalapack-dir=$ISSM_DIR/externalpackages/petsc/install/$ISSM_ARCH --with-mumps-dir=$ISSM_DIR/externalpackages/petsc/install/$ISSM_ARCH --with-fortran-lib="-L/usr/lib/gcc/x86_64-redhat-linux/4.1.1/ -lgfortran" --with-graphics-lib=/usr/lib64/libX11.so --with-cxxoptflags="-march=opteron -O2" --with-numthreads=323 ./configure --prefix=$ISSM_TIER --with-matlab-dir=$MATLAB_DIR --with-triangle-dir=$ISSM_TIER/externalpackages/triangle/install --with-metis-dir=$ISSM_TIER/externalpackages/metis/install --with-petsc-dir=$ISSM_TIER/externalpackages/petsc/install --with-petsc-version=3 --with-mpi-include=$ISSM_TIER/externalpackages/mpich2/install/include --with-mpi-lib="-L$ISSM_TIER/externalpackages/mpich2/install/lib/ -lmpich" --with-petsc-arch=$ISSM_ARCH --with-dakota-dir=$ISSM_TIER/externalpackages/dakota/install --with-blas-lapack-dir=$ISSM_TIER/externalpackages/petsc/install/$ISSM_ARCH --with-plapack-lib="-L $ISSM_TIER/externalpackages/petsc/install/$ISSM_ARCH -lPLAPACK" --with-plapack-include="-I $ISSM_TIER/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/INCLUDE" --with-blacs-dir=$ISSM_TIER/externalpackages/petsc/install/$ISSM_ARCH --with-scalapack-dir=$ISSM_TIER/externalpackages/petsc/install/$ISSM_ARCH --with-mumps-dir=$ISSM_TIER/externalpackages/petsc/install/$ISSM_ARCH --with-fortran-lib="-L/usr/lib/gcc/x86_64-redhat-linux/4.1.1/ -lgfortran" --with-graphics-lib=/usr/lib64/libX11.so --with-cxxoptflags="-march=opteron -O2" --with-numthreads=32 -
issm/trunk/configs/macosx32/macosx32.sh.petsc2
r3673 r6088 1 1 #!/bin/sh 2 2 3 ./configure --prefix=$ISSM_ DIR --with-matlab-dir=$MATLAB_DIR --with-triangle-dir=$ISSM_DIR/externalpackages/triangle/install --with-metis-dir=$ISSM_DIR/externalpackages/metis/install --with-petsc-dir=$ISSM_DIR/externalpackages/petsc/install --with-mpi-include=$ISSM_DIR/externalpackages/mpich2/install/include --with-mpi-lib=" $ISSM_DIR/externalpackages/mpich2/install/lib/libpmpich.a $ISSM_DIR/externalpackages/mpich2/install/lib/libmpich.a" --with-petsc-arch=$ISSM_ARCH --with-blas-lapack-dir=$ISSM_DIR/externalpackages/petsc/install/externalpackages/fblaslapack/$ISSM_ARCH --with-plapack-lib="-L$ISSM_DIR/externalpackages/petsc/install/externalpackages/PLAPACKR32/$ISSM_ARCH -lPLAPACK" --with-plapack-include="-I$ISSM_DIR/externalpackages/petsc/install/externalpackages/PLAPACKR32/$ISSM_ARCH/INCLUDE" --with-blacs-dir=$ISSM_DIR/externalpackages/petsc/install/externalpackages/blacs-dev/$ISSM_ARCH --with-scalapack-dir=$ISSM_DIR/externalpackages/petsc/install/externalpackages/SCALAPACK/$ISSM_ARCH/ --with-mumps-dir=$ISSM_DIR/externalpackages/petsc/install/externalpackages/MUMPS_4.6.3/$ISSM_ARCH --with-fortran-lib="/usr/local/lib/libgfortran.a" --with-math-lib="/usr/lib/libm.dylib" --with-graphics-lib="/usr/X11/lib/libX11.dylib" --with-petsc-version=23 ./configure --prefix=$ISSM_TIER --with-matlab-dir=$MATLAB_DIR --with-triangle-dir=$ISSM_TIER/externalpackages/triangle/install --with-metis-dir=$ISSM_TIER/externalpackages/metis/install --with-petsc-dir=$ISSM_TIER/externalpackages/petsc/install --with-mpi-include=$ISSM_TIER/externalpackages/mpich2/install/include --with-mpi-lib=" $ISSM_TIER/externalpackages/mpich2/install/lib/libpmpich.a $ISSM_TIER/externalpackages/mpich2/install/lib/libmpich.a" --with-petsc-arch=$ISSM_ARCH --with-blas-lapack-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/fblaslapack/$ISSM_ARCH --with-plapack-lib="-L$ISSM_TIER/externalpackages/petsc/install/externalpackages/PLAPACKR32/$ISSM_ARCH -lPLAPACK" --with-plapack-include="-I$ISSM_TIER/externalpackages/petsc/install/externalpackages/PLAPACKR32/$ISSM_ARCH/INCLUDE" --with-blacs-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/blacs-dev/$ISSM_ARCH --with-scalapack-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/SCALAPACK/$ISSM_ARCH/ --with-mumps-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/MUMPS_4.6.3/$ISSM_ARCH --with-fortran-lib="/usr/local/lib/libgfortran.a" --with-math-lib="/usr/lib/libm.dylib" --with-graphics-lib="/usr/X11/lib/libX11.dylib" --with-petsc-version=2 -
issm/trunk/configs/macosx32/macosx32.sh.petsc3
r3225 r6088 1 1 #!/bin/sh 2 2 3 ./configure --prefix=$ISSM_ DIR --with-matlab-dir=$MATLAB_DIR --with-triangle-dir=$ISSM_DIR/externalpackages/triangle/install --with-metis-dir=$ISSM_DIR/externalpackages/metis/install --with-petsc-dir=$ISSM_DIR/externalpackages/petsc/install --with-mpi-include=$ISSM_DIR/externalpackages/mpich2/install/include --with-mpi-lib=" $ISSM_DIR/externalpackages/mpich2/install/lib/libpmpich.a $ISSM_DIR/externalpackages/mpich2/install/lib/libmpich.a" --with-petsc-arch=$ISSM_ARCH --with-dakota-dir=$ISSM_DIR/externalpackages/dakota/install --with-blas-lapack-dir=$ISSM_DIR/externalpackages/petsc/install/externalpackages/fblaslapack/$ISSM_ARCH --with-plapack-lib="-L$ISSM_DIR/externalpackages/petsc/install/$ISSM_ARCH -lPLAPACK" --with-plapack-include=$ISSM_DIR/externalpackages/petsc/install/externalpackages/PLAPACKR32/$ISSM_ARCH" --with-blacs-dir=$ISSM_DIR/externalpackages/petsc/install/$ISSM_ARCH --with-scalapack-dir=$ISSM_DIR/externalpackages/petsc/install/$ISSM_ARCH/ --with-mumps-dir=$ISSM_DIR/externalpackages/petsc/install/$ISSM_ARCH --with-fortran-lib="/usr/local/lib/libgfortran.a" --with-math-lib="/usr/lib/libm.dylib" --with-graphics-lib="/usr/X11/lib/libX11.dylib" --with-petsc-version=33 ./configure --prefix=$ISSM_TIER --with-matlab-dir=$MATLAB_DIR --with-triangle-dir=$ISSM_TIER/externalpackages/triangle/install --with-metis-dir=$ISSM_TIER/externalpackages/metis/install --with-petsc-dir=$ISSM_TIER/externalpackages/petsc/install --with-mpi-include=$ISSM_TIER/externalpackages/mpich2/install/include --with-mpi-lib=" $ISSM_TIER/externalpackages/mpich2/install/lib/libpmpich.a $ISSM_TIER/externalpackages/mpich2/install/lib/libmpich.a" --with-petsc-arch=$ISSM_ARCH --with-dakota-dir=$ISSM_TIER/externalpackages/dakota/install --with-blas-lapack-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/fblaslapack/$ISSM_ARCH --with-plapack-lib="-L$ISSM_TIER/externalpackages/petsc/install/$ISSM_ARCH -lPLAPACK" --with-plapack-include=$ISSM_TIER/externalpackages/petsc/install/externalpackages/PLAPACKR32/$ISSM_ARCH" --with-blacs-dir=$ISSM_TIER/externalpackages/petsc/install/$ISSM_ARCH --with-scalapack-dir=$ISSM_TIER/externalpackages/petsc/install/$ISSM_ARCH/ --with-mumps-dir=$ISSM_TIER/externalpackages/petsc/install/$ISSM_ARCH --with-fortran-lib="/usr/local/lib/libgfortran.a" --with-math-lib="/usr/lib/libm.dylib" --with-graphics-lib="/usr/X11/lib/libX11.dylib" --with-petsc-version=3 -
issm/trunk/configs/macosx64/macosx64.sh.petsc2
r5680 r6088 1 1 #!/bin/sh 2 2 3 ./configure --prefix=$ISSM_ DIR --with-matlab-dir=$MATLAB_DIR --with-triangle-dir=$ISSM_DIR/externalpackages/triangle/install --with-metis-dir=$ISSM_DIR/externalpackages/metis/install --with-petsc-dir=$ISSM_DIR/externalpackages/petsc/install --with-petsc-version=2 --with-mpi-include=$ISSM_DIR/externalpackages/mpich2/install/include --with-mpi-lib=" $ISSM_DIR/externalpackages/mpich2/install/lib/libpmpich.a $ISSM_DIR/externalpackages/mpich2/install/lib/libmpich.a" --with-petsc-arch=$ISSM_ARCH --with-dakota-dir=$ISSM_DIR/externalpackages/dakota/install --with-blas-lapack-dir=$ISSM_DIR/externalpackages/petsc/install/externalpackages/fblaslapack/$ISSM_ARCH --with-plapack-lib="-L$ISSM_DIR/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/$ISSM_ARCH -lPLAPACK" --with-plapack-include="$ISSM_DIR/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/$ISSM_ARCH/INCLUDE" --with-blacs-dir=$ISSM_DIR/externalpackages/petsc/install/externalpackages/blacs-dev/$ISSM_ARCH --with-scalapack-dir=$ISSM_DIR/externalpackages/petsc/install/externalpackages/SCALAPACK/$ISSM_ARCH/ --with-mumps-dir=$ISSM_DIR/externalpackages/petsc/install/externalpackages/MUMPS_4.6.3 --with-fortran-lib="/usr/local/lib/libgfortran.a" --with-math-lib="/usr/lib/libm.dylib" --with-graphics-lib="/usr/X11/lib/libX11.dylib" --with-cxxoptflags=" -DMATLAB_MEX_FILE -fno-common -no-cpp-precomp -fexceptions -arch i386 -DMX_COMPAT_32 -O3 -DNDEBUG -w" --with-numthreads=83 ./configure --prefix=$ISSM_TIER --with-matlab-dir=$MATLAB_DIR --with-triangle-dir=$ISSM_TIER/externalpackages/triangle/install --with-metis-dir=$ISSM_TIER/externalpackages/metis/install --with-petsc-dir=$ISSM_TIER/externalpackages/petsc/install --with-petsc-version=2 --with-mpi-include=$ISSM_TIER/externalpackages/mpich2/install/include --with-mpi-lib=" $ISSM_TIER/externalpackages/mpich2/install/lib/libpmpich.a $ISSM_TIER/externalpackages/mpich2/install/lib/libmpich.a" --with-petsc-arch=$ISSM_ARCH --with-dakota-dir=$ISSM_TIER/externalpackages/dakota/install --with-blas-lapack-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/fblaslapack/$ISSM_ARCH --with-plapack-lib="-L$ISSM_TIER/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/$ISSM_ARCH -lPLAPACK" --with-plapack-include="$ISSM_TIER/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/$ISSM_ARCH/INCLUDE" --with-blacs-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/blacs-dev/$ISSM_ARCH --with-scalapack-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/SCALAPACK/$ISSM_ARCH/ --with-mumps-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/MUMPS_4.6.3 --with-fortran-lib="/usr/local/lib/libgfortran.a" --with-math-lib="/usr/lib/libm.dylib" --with-graphics-lib="/usr/X11/lib/libX11.dylib" --with-cxxoptflags=" -DMATLAB_MEX_FILE -fno-common -no-cpp-precomp -fexceptions -arch i386 -DMX_COMPAT_32 -O3 -DNDEBUG -w" --with-numthreads=8 -
issm/trunk/configs/macosx64/macosx64.sh.petsc3
r3321 r6088 1 1 #!/bin/sh 2 2 3 ./configure --prefix=$ISSM_ DIR --with-matlab-dir=$MATLAB_DIR --with-triangle-dir=$ISSM_DIR/externalpackages/triangle/install --with-metis-dir=$ISSM_DIR/externalpackages/metis/install --with-petsc-dir=$ISSM_DIR/externalpackages/petsc/install --with-petsc-version=3 --with-mpi-include=$ISSM_DIR/externalpackages/mpich2/install/include --with-mpi-lib=" $ISSM_DIR/externalpackages/mpich2/install/lib/libpmpich.a $ISSM_DIR/externalpackages/mpich2/install/lib/libmpich.a" --with-petsc-arch=$ISSM_ARCH --with-dakota-dir=$ISSM_DIR/externalpackages/dakota/install --with-blas-lapack-dir=$ISSM_DIR/externalpackages/petsc/install/$ISSM_ARCH --with-plapack-lib="-L$ISSM_DIR/externalpackages/petsc/install/$ISSM_ARCH -lPLAPACK" --with-plapack-include="$ISSM_DIR/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/INCLUDE" --with-blacs-dir=$ISSM_DIR/externalpackages/petsc/install/$ISSM_ARCH --with-scalapack-dir=$ISSM_DIR/externalpackages/petsc/install/$ISSM_ARCH/ --with-mumps-dir=$ISSM_DIR/externalpackages/petsc/install/$ISSM_ARCH --with-fortran-lib="/usr/local/lib/libgfortran.a" --with-math-lib="/usr/lib/libm.dylib" --with-graphics-lib="/usr/X11/lib/libX11.dylib" --with-cxxoptflags="-march=opteron -O2" --with-numthreads=83 ./configure --prefix=$ISSM_TIER --with-matlab-dir=$MATLAB_DIR --with-triangle-dir=$ISSM_TIER/externalpackages/triangle/install --with-metis-dir=$ISSM_TIER/externalpackages/metis/install --with-petsc-dir=$ISSM_TIER/externalpackages/petsc/install --with-petsc-version=3 --with-mpi-include=$ISSM_TIER/externalpackages/mpich2/install/include --with-mpi-lib=" $ISSM_TIER/externalpackages/mpich2/install/lib/libpmpich.a $ISSM_TIER/externalpackages/mpich2/install/lib/libmpich.a" --with-petsc-arch=$ISSM_ARCH --with-dakota-dir=$ISSM_TIER/externalpackages/dakota/install --with-blas-lapack-dir=$ISSM_TIER/externalpackages/petsc/install/$ISSM_ARCH --with-plapack-lib="-L$ISSM_TIER/externalpackages/petsc/install/$ISSM_ARCH -lPLAPACK" --with-plapack-include="$ISSM_TIER/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/INCLUDE" --with-blacs-dir=$ISSM_TIER/externalpackages/petsc/install/$ISSM_ARCH --with-scalapack-dir=$ISSM_TIER/externalpackages/petsc/install/$ISSM_ARCH/ --with-mumps-dir=$ISSM_TIER/externalpackages/petsc/install/$ISSM_ARCH --with-fortran-lib="/usr/local/lib/libgfortran.a" --with-math-lib="/usr/lib/libm.dylib" --with-graphics-lib="/usr/X11/lib/libX11.dylib" --with-cxxoptflags="-march=opteron -O2" --with-numthreads=8 -
issm/trunk/configs/pleiades/pleiades.sh.petsc2
r3225 r6088 1 1 #!/bin/csh 2 2 3 ./configure --prefix=$ISSM_ DIR --with-serial=no --with-metis-dir=$ISSM_DIR/externalpackages/metis/install --with-petsc-dir=$ISSM_DIR/externalpackages/petsc/install --with-mpi-include=/nasa/sgi/mpt/1.23.nas/includ --with-mpi-lib="-L/nasa/sgi/mpt/1.23.nas/lib64/ -lmpi -lpthread -lgfortran" --with-petsc-arch=$ISSM_ARCH --with-dakota-dir=$ISSM_DIR/externalpackages/dakota/install --with-mkl-dir=/nasa/intel/mkl/10.0.011/lib/64/ --with-plapack-lib="-L$ISSM_DIR/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/$ISSM_ARCH -lPLAPACK" --with-plapack-include="-I$ISSM_DIR/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/$ISSM_ARCH/INCLUDE" --with-mumps-dir=$ISSM_DIR/externalpackages/petsc/install/externalpackages/MUMPS_4.6.3/$ISSM_ARCH/ --with-scalapack-dir=$ISSM_DIR/externalpackages/petsc/install/externalpackages/SCALAPACK/$ISSM_ARCH/ --with-blacs-dir=$ISSM_DIR/externalpackages/petsc/install/externalpackages/blacs-dev/$ISSM_ARCH --with-graphics-lib=/usr/X11/lib64/libX11.so --with-cxxoptflags="-O3 -xS" --with-vendor=intel-pleiades --with-petsc-version=23 ./configure --prefix=$ISSM_TIER --with-serial=no --with-metis-dir=$ISSM_TIER/externalpackages/metis/install --with-petsc-dir=$ISSM_TIER/externalpackages/petsc/install --with-mpi-include=/nasa/sgi/mpt/1.23.nas/includ --with-mpi-lib="-L/nasa/sgi/mpt/1.23.nas/lib64/ -lmpi -lpthread -lgfortran" --with-petsc-arch=$ISSM_ARCH --with-dakota-dir=$ISSM_TIER/externalpackages/dakota/install --with-mkl-dir=/nasa/intel/mkl/10.0.011/lib/64/ --with-plapack-lib="-L$ISSM_TIER/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/$ISSM_ARCH -lPLAPACK" --with-plapack-include="-I$ISSM_TIER/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/$ISSM_ARCH/INCLUDE" --with-mumps-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/MUMPS_4.6.3/$ISSM_ARCH/ --with-scalapack-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/SCALAPACK/$ISSM_ARCH/ --with-blacs-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/blacs-dev/$ISSM_ARCH --with-graphics-lib=/usr/X11/lib64/libX11.so --with-cxxoptflags="-O3 -xS" --with-vendor=intel-pleiades --with-petsc-version=2 -
issm/trunk/configs/pleiades/pleiades.sh.petsc3
r3225 r6088 1 1 #!/bin/csh 2 2 3 ./configure --prefix=$ISSM_ DIR --with-serial=no --with-metis-dir=$ISSM_DIR/externalpackages/metis/install --with-petsc-dir=$ISSM_DIR/externalpackages/petsc/install --with-mpi-include=/nasa/sgi/mpt/1.23.nas/includ --with-mpi-lib="-L/nasa/sgi/mpt/1.23.nas/lib64/ -lmpi -lpthread -lgfortran" --with-petsc-arch=$ISSM_ARCH --with-dakota-dir=$ISSM_DIR/externalpackages/dakota/install --with-mkl-dir=/nasa/intel/mkl/10.0.011/lib/64/ --with-plapack-lib="-L$ISSM_DIR/externalpackages/petsc/install/$ISSM_ARCH -lPLAPACK" --with-plapack-include="-I$ISSM_DIR/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/$ISSM_ARCH/INCLUDE" --with-mumps-dir=$ISSM_DIR/externalpackages/petsc/install/externalpackages/MUMPS_4.6.3/$ISSM_ARCH/ --with-scalapack-dir=$ISSM_DIR/externalpackages/petsc/install/externalpackages/SCALAPACK/$ISSM_ARCH/ --with-blacs-dir=$ISSM_DIR/externalpackages/petsc/install/externalpackages/blacs-dev/$ISSM_ARCH --with-graphics-lib=/usr/X11/lib64/libX11.so --with-cxxoptflags="-O3 -xS" --with-vendor=intel-pleiades --with-petsc-version=23 ./configure --prefix=$ISSM_TIER --with-serial=no --with-metis-dir=$ISSM_TIER/externalpackages/metis/install --with-petsc-dir=$ISSM_TIER/externalpackages/petsc/install --with-mpi-include=/nasa/sgi/mpt/1.23.nas/includ --with-mpi-lib="-L/nasa/sgi/mpt/1.23.nas/lib64/ -lmpi -lpthread -lgfortran" --with-petsc-arch=$ISSM_ARCH --with-dakota-dir=$ISSM_TIER/externalpackages/dakota/install --with-mkl-dir=/nasa/intel/mkl/10.0.011/lib/64/ --with-plapack-lib="-L$ISSM_TIER/externalpackages/petsc/install/$ISSM_ARCH -lPLAPACK" --with-plapack-include="-I$ISSM_TIER/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/$ISSM_ARCH/INCLUDE" --with-mumps-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/MUMPS_4.6.3/$ISSM_ARCH/ --with-scalapack-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/SCALAPACK/$ISSM_ARCH/ --with-blacs-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/blacs-dev/$ISSM_ARCH --with-graphics-lib=/usr/X11/lib64/libX11.so --with-cxxoptflags="-O3 -xS" --with-vendor=intel-pleiades --with-petsc-version=2 -
issm/trunk/configs/winxp32/winxp32.sh.petsc2
r3225 r6088 4 4 #get configure.sh to pick up the intel compiler 5 5 6 ./configure --prefix=$ISSM_ DIR --with-parallel=no --with-vendor=intel --with-matlab-dir=$MATLAB_DIR --with-triangle-dir=$ISSM_DIR/externalpackages/triangle/install --with-metis-dir=$ISSM_DIR/externalpackages/metis/install --with-petsc-dir=$ISSM_DIR/externalpackages/petsc/install --with-petsc-arch=$ISSM_ARCH --with-blas-lapack-dir=$ISSM_DIR/externalpackages/petsc/install/externalpackages/f2cblaslapack/$ISSM_ARCH --with-petsc-version=26 ./configure --prefix=$ISSM_TIER --with-parallel=no --with-vendor=intel --with-matlab-dir=$MATLAB_DIR --with-triangle-dir=$ISSM_TIER/externalpackages/triangle/install --with-metis-dir=$ISSM_TIER/externalpackages/metis/install --with-petsc-dir=$ISSM_TIER/externalpackages/petsc/install --with-petsc-arch=$ISSM_ARCH --with-blas-lapack-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/f2cblaslapack/$ISSM_ARCH --with-petsc-version=2 -
issm/trunk/configs/winxp32/winxp32.sh.petsc3
r3225 r6088 4 4 #get configure.sh to pick up the intel compiler 5 5 6 ./configure --prefix=$ISSM_ DIR --with-parallel=no --with-vendor=intel --with-matlab-dir=$MATLAB_DIR --with-triangle-dir=$ISSM_DIR/externalpackages/triangle/install --with-metis-dir=$ISSM_DIR/externalpackages/metis/install --with-petsc-dir=$ISSM_DIR/externalpackages/petsc/install --with-petsc-arch=$ISSM_ARCH --with-blas-lapack-dir=$ISSM_DIR/externalpackages/petsc/install/externalpackages/f2cblaslapack/$ISSM_ARCH --with-petsc-version=36 ./configure --prefix=$ISSM_TIER --with-parallel=no --with-vendor=intel --with-matlab-dir=$MATLAB_DIR --with-triangle-dir=$ISSM_TIER/externalpackages/triangle/install --with-metis-dir=$ISSM_TIER/externalpackages/metis/install --with-petsc-dir=$ISSM_TIER/externalpackages/petsc/install --with-petsc-arch=$ISSM_ARCH --with-blas-lapack-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/f2cblaslapack/$ISSM_ARCH --with-petsc-version=3 -
issm/trunk/cron/README
r42 r6088 7 7 For example, if you add: 8 8 9 5 5 * * * cd $ISSM_ DIR/cron && ./nightlyrun.sh9 5 5 * * * cd $ISSM_TIER/cron && ./nightlyrun.sh 10 10 11 11 This will run all the scripts in the Cron directory, every day, at 5:05 am. -
issm/trunk/cron/configs/linux64_larour
r5068 r6088 7 7 8 8 #ISSM main directory (full pathto ISSM trunk) 9 ISSM_ DIR="/u/astrid-r1b/larour/issm/trunk/cron/trunk"10 #ISSM_ DIR="/u/wilkes-r1b/morlighe/svn/issm/trunk/cron/issm2.2"9 ISSM_TIER="/u/astrid-r1b/larour/issm/trunk/cron/trunk" 10 #ISSM_TIER="/u/wilkes-r1b/morlighe/svn/issm/trunk/cron/issm2.2" 11 11 12 12 #ISSM Architecture … … 70 70 71 71 #Mail delivery. If SKIPMAIL="no", the html nightly run report will be 72 #sent to the adresses present in $ISSM_ DIR/cron/mailinglist.72 #sent to the adresses present in $ISSM_TIER/cron/mailinglist. 73 73 SKIPMAIL="no" 74 74 -
issm/trunk/cron/configs/linux64_morlighem_daily
r5603 r6088 7 7 8 8 #ISSM main directory (full pathto ISSM trunk) 9 ISSM_ DIR="/u/wilkes-r1b/morlighe/svn/issm/trunk/cron/trunk"10 #ISSM_ DIR="/u/wilkes-r1b/morlighe/svn/issm/trunk/cron/issm2.2"9 ISSM_TIER="/u/wilkes-r1b/morlighe/svn/issm/trunk/cron/trunk" 10 #ISSM_TIER="/u/wilkes-r1b/morlighe/svn/issm/trunk/cron/issm2.2" 11 11 12 12 #ISSM Architecture … … 70 70 71 71 #Mail delivery. If SKIPMAIL="no", the html nightly run report will be 72 #sent to the adresses present in $ISSM_ DIR/cron/mailinglist.72 #sent to the adresses present in $ISSM_TIER/cron/mailinglist. 73 73 SKIPMAIL="no" 74 74 -
issm/trunk/cron/configs/linux64_morlighem_nightly
r5603 r6088 7 7 8 8 #ISSM main directory (full pathto ISSM trunk) 9 ISSM_ DIR="/u/wilkes-r1b/morlighe/svn/issm/trunk/cron/trunk"10 #ISSM_ DIR="/u/wilkes-r1b/morlighe/svn/issm/trunk/cron/issm2.2"9 ISSM_TIER="/u/wilkes-r1b/morlighe/svn/issm/trunk/cron/trunk" 10 #ISSM_TIER="/u/wilkes-r1b/morlighe/svn/issm/trunk/cron/issm2.2" 11 11 12 12 #ISSM Architecture … … 70 70 71 71 #Mail delivery. If SKIPMAIL="no", the html nightly run report will be 72 #sent to the adresses present in $ISSM_ DIR/cron/mailinglist.72 #sent to the adresses present in $ISSM_TIER/cron/mailinglist. 73 73 SKIPMAIL="no" 74 74 -
issm/trunk/cron/configs/linux64_morlighem_validation
r5603 r6088 6 6 7 7 #ISSM main directory (full pathto ISSM trunk) 8 ISSM_ DIR="/u/wilkes-r1b/morlighe/svn/issm/trunk/cron/trunk"9 #ISSM_ DIR="/u/wilkes-r1b/morlighe/svn/issm/trunk/cron/issm2.2"8 ISSM_TIER="/u/wilkes-r1b/morlighe/svn/issm/trunk/cron/trunk" 9 #ISSM_TIER="/u/wilkes-r1b/morlighe/svn/issm/trunk/cron/issm2.2" 10 10 11 11 #ISSM Architecture … … 69 69 70 70 #Mail delivery. If SKIPMAIL="no", the html nightly run report will be 71 #sent to the adresses present in $ISSM_ DIR/cron/mailinglist.71 #sent to the adresses present in $ISSM_TIER/cron/mailinglist. 72 72 SKIPMAIL="no" 73 73 -
issm/trunk/cron/configs/linux64_seroussi
r5068 r6088 7 7 8 8 #ISSM main directory (full pathto ISSM trunk) 9 ISSM_ DIR="/u/wilkes-r1b/seroussi/svn/issm/trunk/cron/trunk"9 ISSM_TIER="/u/wilkes-r1b/seroussi/svn/issm/trunk/cron/trunk" 10 10 11 11 #ISSM Architecture … … 69 69 70 70 #Mail delivery. If SKIPMAIL="no", the html nightly run report will be 71 #sent to the adresses present in $ISSM_ DIR/cron/mailinglist.71 #sent to the adresses present in $ISSM_TIER/cron/mailinglist. 72 72 SKIPMAIL="no" 73 73 -
issm/trunk/cron/configs/macosx32_seroussi
r5068 r6088 7 7 8 8 #ISSM main directory (full pathto ISSM trunk) 9 ISSM_ DIR="/Users/seroussi/Desktop/backup/svn/issm/trunk/cron/trunk"9 ISSM_TIER="/Users/seroussi/Desktop/backup/svn/issm/trunk/cron/trunk" 10 10 11 11 #ISSM Architecture … … 69 69 70 70 #Mail delivery. If SKIPMAIL="no", the html nightly run report will be 71 #sent to the adresses present in $ISSM_ DIR/cron/mailinglist.71 #sent to the adresses present in $ISSM_TIER/cron/mailinglist. 72 72 SKIPMAIL="no" 73 73 -
issm/trunk/cron/configs/winxp32_larour
r5068 r6088 7 7 8 8 #ISSM main directory (full pathto ISSM trunk) 9 ISSM_ DIR="C:/home/issm/trunk/cron/trunk"9 ISSM_TIER="C:/home/issm/trunk/cron/trunk" 10 10 11 11 #ISSM Architecture … … 69 69 70 70 #Mail delivery. If SKIPMAIL="no", the html nightly run report will be 71 #sent to the adresses present in $ISSM_ DIR/cron/mailinglist.71 #sent to the adresses present in $ISSM_TIER/cron/mailinglist. 72 72 SKIPMAIL="no" 73 73 -
issm/trunk/cron/nightlyrun.sh
r5983 r6088 54 54 #}}} 55 55 #Export ISSM_* variables{{{1 56 export ISSM_ DIR56 export ISSM_TIER 57 57 export ISSM_ARCH 58 58 #}}} … … 79 79 80 80 #only update ISSM 81 cd $ISSM_ DIR81 cd $ISSM_TIER 82 82 svn update 83 83 … … 98 98 #Create cluster's settings{{{1 99 99 #create simpler cluster.rc file, with only the cluster we are interested in. 100 cd $ISSM_ DIR/test/NightlyRun/100 cd $ISSM_TIER/test/NightlyRun/ 101 101 cat << END > SetParallel.m 102 102 function md=SetParallel(md,numcpus); 103 103 104 eval(['md.cluster=' oshostname() '(''np'',numcpus,''login'',''$USER'',''codepath'',''$ISSM_ DIR/bin'',''executionpath'',''$EXECUTION_PATH'');']);104 eval(['md.cluster=' oshostname() '(''np'',numcpus,''login'',''$USER'',''codepath'',''$ISSM_TIER/bin'',''executionpath'',''$EXECUTION_PATH'');']); 105 105 END 106 106 #}}} 107 107 #Source environment variables with new matlab path {{{1 108 cd $ISSM_ DIR/etc108 cd $ISSM_TIER/etc 109 109 source environment.sh MATLAB_DIR=$MATLAB_PATH 110 110 #}}} … … 112 112 if [ "$ISSM_EXTERNALPACKAGES" == "install" ] 113 113 then 114 cd $ISSM_ DIR/externalpackages114 cd $ISSM_TIER/externalpackages 115 115 for ep in $EXTERNALPACKAGES 116 116 do … … 131 131 132 132 #3: install automake and autoconf 133 cd $ISSM_ DIR/devpackages133 cd $ISSM_TIER/devpackages 134 134 make 135 135 cd .. … … 139 139 140 140 #erase externapackages, and link with externalpackages_dir 141 cd $ISSM_ DIR141 cd $ISSM_TIER 142 142 rm -rf externalpackages 143 143 cp -Rf $EXTERNALPACKAGESDIR ./ … … 164 164 then 165 165 166 cd $ISSM_ DIR166 cd $ISSM_TIER 167 167 make distclean 168 168 sh scripts/automakererun.sh … … 173 173 if [ "$OS" = "winxp32" ] 174 174 then 175 cd $ISSM_ DIR/src/c175 cd $ISSM_TIER/src/c 176 176 ./intel-compile.sh 177 cd $ISSM_ DIR/src/mex177 cd $ISSM_TIER/src/mex 178 178 make install 179 cd $ISSM_ DIR179 cd $ISSM_TIER 180 180 else 181 181 make -j $NUMCPUS_INSTALL … … 200 200 #Prepare run 201 201 #Windows hack for startup.m {{{1 202 #windows environments: ISSM_ DIR_WIN variable not correctly picked up when using203 #the cron job. just get startup to take the ISSM_ DIR variable as the pwd:202 #windows environments: ISSM_TIER_WIN variable not correctly picked up when using 203 #the cron job. just get startup to take the ISSM_TIER variable as the pwd: 204 204 if [ "$OS" = "winxp32" ] 205 205 then 206 cat startup.m | sed 's/clear status/clear status; ISSM_ DIR=pwd;/g' > startup.m.bak206 cat startup.m | sed 's/clear status/clear status; ISSM_TIER=pwd;/g' > startup.m.bak 207 207 mv startup.m.bak startup.m 208 208 fi 209 209 #}}} 210 210 #create softlink to startup {{{1 211 cd $ISSM_ DIR/test/NightlyRun/212 ln -s $ISSM_ DIR/startup.m .211 cd $ISSM_TIER/test/NightlyRun/ 212 ln -s $ISSM_TIER/startup.m . 213 213 #}}} 214 214 #Create nightlylog directory and info.log {{{1 … … 216 216 INSTALL_TIME=$(timer) 217 217 ELAPSED_INSTALL=$(timer $START_TIME) 218 rm -rf $ISSM_ DIR/nightlylog219 mkdir $ISSM_ DIR/nightlylog220 cat << END > $ISSM_ DIR/nightlylog/info.log218 rm -rf $ISSM_TIER/nightlylog 219 mkdir $ISSM_TIER/nightlylog 220 cat << END > $ISSM_TIER/nightlylog/info.log 221 221 today: $(echo $TODAY) 222 222 user: $(echo $USER) … … 241 241 do 242 242 #Launch matlab and the nightly run script 243 cat > $ISSM_ DIR/nightlylog/matlab_run$i.m << EOF243 cat > $ISSM_TIER/nightlylog/matlab_run$i.m << EOF 244 244 warning off %necessary to avoid a info.log of several Go for parallel runs 245 245 try, 246 cd $ISSM_ DIR/test/NightlyRun246 cd $ISSM_TIER/test/NightlyRun 247 247 startup; 248 248 $(if [ "$NROPTIONS" = "" ] … … 257 257 directory=strsplit(pwd,'/'); 258 258 message=getReport(me) 259 fid=fopen([ISSM_ DIR '/nightlylog/matlaberror.log'], 'at');259 fid=fopen([ISSM_TIER '/nightlylog/matlaberror.log'], 'at'); 260 260 fprintf(fid,'\nMatlab error occured in: %s\n\n',directory{end}); 261 261 fprintf(fid,'%s',message); … … 267 267 268 268 #Start run from nightlylog directory 269 cd $ISSM_ DIR/nightlylog/269 cd $ISSM_TIER/nightlylog/ 270 270 271 271 #Start test … … 278 278 #}}} 279 279 #concatenate all reports {{{1 280 cd $ISSM_ DIR/nightlylog/280 cd $ISSM_TIER/nightlylog/ 281 281 mv matlab_log1.log matlab_log.log 282 282 for (( i=2;i<=$NUMCPUS_RUN;i++ )) … … 295 295 ELAPSED_RUN=$(timer $INSTALL_TIME) 296 296 ELAPSED_TOTAL=$(timer $START_TIME) 297 cat << END >> $ISSM_ DIR/nightlylog/info.log297 cat << END >> $ISSM_TIER/nightlylog/info.log 298 298 elapsed_run: $(echo $ELAPSED_RUN) 299 299 elapsed_total: $(echo $ELAPSED_TOTAL) … … 304 304 #Send Report 305 305 #Build html report {{{1 306 cd $ISSM_ DIR/nightlylog/306 cd $ISSM_TIER/nightlylog/ 307 307 sh ../scripts/report.sh 308 echo "html report located in $ISSM_ DIR/nightlylog/report.html"308 echo "html report located in $ISSM_TIER/nightlylog/report.html" 309 309 #}}} 310 310 #send mail if requested (SKIPMAIL) {{{1 … … 312 312 then 313 313 echo "sending report..." 314 source $ISSM_ DIR/cron/mailinglist314 source $ISSM_TIER/cron/mailinglist 315 315 for i in `echo $MAILINGLIST`; do 316 316 317 317 if [ "$OS" = "winxp32" ] 318 318 then 319 email -html -f "ISSM Nightly run $EMAIL_ADRESS" -s "Nightly runs of $ISSM_RELEASE , operating system: $OS, host: $HOST_NAME, user: $USER. " $i < $ISSM_ DIR/test/Verification/NightlyRun/report.html319 email -html -f "ISSM Nightly run $EMAIL_ADRESS" -s "Nightly runs of $ISSM_RELEASE , operating system: $OS, host: $HOST_NAME, user: $USER. " $i < $ISSM_TIER/test/Verification/NightlyRun/report.html 320 320 else 321 321 if [ "$OS" = "linux64" ] 322 322 then 323 cat - $ISSM_ DIR/nightlylog/report.html <<HERE | /usr/lib/sendmail -oi -t323 cat - $ISSM_TIER/nightlylog/report.html <<HERE | /usr/lib/sendmail -oi -t 324 324 From: "ISSM Nightly run" <$EMAIL_ADRESS> 325 325 To: $i … … 329 329 HERE 330 330 else 331 cat - $ISSM_ DIR/nightlylog/report.html <<HERE | /usr/sbin/sendmail -oi -t331 cat - $ISSM_TIER/nightlylog/report.html <<HERE | /usr/sbin/sendmail -oi -t 332 332 From: "ISSM Nightly run" <$EMAIL_ADRESS> 333 333 To: $i -
issm/trunk/devpackages/autoconf/install.sh
r18 r6088 19 19 #Compile autoconf 20 20 cd src 21 ./configure --prefix="$ISSM_ DIR/devpackages/autoconf/install"21 ./configure --prefix="$ISSM_TIER/devpackages/autoconf/install" 22 22 make 23 23 make install -
issm/trunk/devpackages/automake/install.sh
r18 r6088 19 19 #Compile automake 20 20 cd src 21 ./configure --prefix="$ISSM_ DIR/devpackages/automake/install"21 ./configure --prefix="$ISSM_TIER/devpackages/automake/install" 22 22 make 23 23 make install -
issm/trunk/doc/issmdoc.m
r1282 r6088 1 1 %Quick documentation for ISSM 2 2 3 %First get ISSM dir:4 ISSM_ DIR=issmdir;3 %First get ISSM tier: 4 ISSM_TIER=issmtier; 5 5 6 disp(sprintf('\n%s%s%s',' The following documentations are available in ',ISSM_ DIR,'/doc/'));6 disp(sprintf('\n%s%s%s',' The following documentations are available in ',ISSM_TIER,'/doc/')); 7 7 disp(sprintf('%s',' userguide: how to use ISSM, quick tutorial')); 8 8 disp(sprintf('%s',' theoryguide: theory behind the ISSM models')); … … 10 10 disp(sprintf('\n%s',' Website: a comprehensive documentation is available on http://www.issm.jpl.nasa.gov')); 11 11 disp(sprintf('\n%s',' Example: how to create a square ice shelf')); 12 disp(sprintf('%s',' go to ',ISSM_ DIR,'/examples/SquareIceshelf'));12 disp(sprintf('%s',' go to ',ISSM_TIER,'/examples/SquareIceshelf')); 13 13 disp(sprintf('%s',' md=model; %creates a new empty model structure')); 14 14 disp(sprintf('%s',' md=mesh(md,''DomainOutline.exp'',50000); %creates a mesh of the domain outline with a resolution of 50000m')); -
issm/trunk/etc/environment.csh
r3592 r6088 1 #ISSM_ DIR and ISSM_ARCH should have been defined already in your shell settings file (.bashrc, .cshrc, etc ...)2 source $ISSM_ DIR/etc/environment_variables.csh1 #ISSM_TIER and ISSM_ARCH should have been defined already in your shell settings file (.bashrc, .cshrc, etc ...) 2 source $ISSM_TIER/etc/environment_variables.csh 3 3 4 4 #Do we have any command line arguments? (such as MATLAB_DIR=otherdirthandefault), source them before exporting the variables … … 10 10 11 11 #CRON utilities 12 setenv PATH {$PATH}:{$ISSM_ DIR}/cron12 setenv PATH {$PATH}:{$ISSM_TIER}/cron 13 13 14 14 #SCRIPTS utilities 15 setenv PATH {$PATH}:{$ISSM_ DIR}/scripts15 setenv PATH {$PATH}:{$ISSM_TIER}/scripts 16 16 17 17 #MATLAB -
issm/trunk/etc/environment.sh
r4615 r6088 1 #ISSM_ DIR and ISSM_ARCH should have been defined already in your shell settings file (.bashrc, .cshrc, etc ...)2 source $ISSM_ DIR/etc/environment_variables.sh1 #ISSM_TIER and ISSM_ARCH should have been defined already in your shell settings file (.bashrc, .cshrc, etc ...) 2 source $ISSM_TIER/etc/environment_variables.sh 3 3 4 4 #Do we have any command line arguments? (such as MATLAB_DIR=otherdirthandefault), source them before exporting the variables … … 10 10 11 11 #CRON utilities 12 PATH="$PATH:$ISSM_ DIR/cron"12 PATH="$PATH:$ISSM_TIER/cron" 13 13 14 14 #scripts 15 PATH="$PATH:$ISSM_ DIR/scripts"15 PATH="$PATH:$ISSM_TIER/scripts" 16 16 17 17 ##MATLAB … … 102 102 103 103 #LATEX2RTF 104 export RTFPATH="$ISSM_ DIR/externalpackages/latex2rtf/cfg"104 export RTFPATH="$ISSM_TIER/externalpackages/latex2rtf/cfg" 105 105 106 106 #Chaco … … 132 132 #export INTEL_DIR 133 133 #PATH="$PATH:$INTEL_DIR" 134 #source $ISSM_ DIR/externalpackages/intel/intel.sh134 #source $ISSM_TIER/externalpackages/intel/intel.sh 135 135 136 136 #SDK -
issm/trunk/etc/environment_variables.csh
r5262 r6088 1 1 # 2 2 # 3 #This routine can only be run if the ISSM_ DIR variable has been correctly set!3 #This routine can only be run if the ISSM_TIER variable has been correctly set! 4 4 # 5 5 # 6 6 7 7 #MATLAB 8 set MATLAB_DIR={$ISSM_ DIR}/externalpackages/matlab/install8 set MATLAB_DIR={$ISSM_TIER}/externalpackages/matlab/install 9 9 set MATLAB_VERSION= 10 10 11 11 #MPI 12 set MPI_DIR={$ISSM_ DIR}/externalpackages/mpich2/install12 set MPI_DIR={$ISSM_TIER}/externalpackages/mpich2/install 13 13 14 14 #PETSC 15 set PETSC_DIR={$ISSM_ DIR}/externalpackages/petsc/install15 set PETSC_DIR={$ISSM_TIER}/externalpackages/petsc/install 16 16 17 17 #SLEPC 18 set SLEPC_DIR={$ISSM_ DIR}/externalpackages/slepc/install18 set SLEPC_DIR={$ISSM_TIER}/externalpackages/slepc/install 19 19 20 20 #Dakota 21 set DAKOTA_DIR={$ISSM_ DIR}/externalpackages/dakota/install21 set DAKOTA_DIR={$ISSM_TIER}/externalpackages/dakota/install 22 22 23 23 #Qhull 24 set QHULL_DIR={$ISSM_ DIR}/externalpackages/qhull/install24 set QHULL_DIR={$ISSM_TIER}/externalpackages/qhull/install 25 25 26 26 #Doxygen 27 set DOXYGEN_DIR={$ISSM_ DIR}/externalpackages/doxygen/install27 set DOXYGEN_DIR={$ISSM_TIER}/externalpackages/doxygen/install 28 28 29 29 #MTOC 30 set MTOC_DIR={$ISSM_ DIR}/externalpackages/mtoc/install30 set MTOC_DIR={$ISSM_TIER}/externalpackages/mtoc/install 31 31 32 32 #Triangle 33 set TRIANGLE_DIR={$ISSM_ DIR}/externalpackages/triangle/install33 set TRIANGLE_DIR={$ISSM_TIER}/externalpackages/triangle/install 34 34 35 35 #METIS 36 set METIS_DIR={$ISSM_ DIR}/externalpackages/metis/install36 set METIS_DIR={$ISSM_TIER}/externalpackages/metis/install 37 37 38 38 #BLAS 39 set BLAS_DIR={$ISSM_ DIR}/externalpackages/petsc/install/externalexternalpackages/fblaslapack39 set BLAS_DIR={$ISSM_TIER}/externalpackages/petsc/install/externalexternalpackages/fblaslapack 40 40 41 41 #LAPACK 42 set LAPACK_DIR={$ISSM_ DIR}/externalpackages/petsc/install/externalexternalpackages/fblaslapack/$ISSM_ARCH42 set LAPACK_DIR={$ISSM_TIER}/externalpackages/petsc/install/externalexternalpackages/fblaslapack/$ISSM_ARCH 43 43 44 44 #SCALAPACK 45 set SCALAPACK_DIR={$ISSM_ DIR}/externalpackages/petsc/install/externalexternalpackages/SCALAPACK/$ISSM_ARCH45 set SCALAPACK_DIR={$ISSM_TIER}/externalpackages/petsc/install/externalexternalpackages/SCALAPACK/$ISSM_ARCH 46 46 47 47 #PLAPACK 48 set PLAPACK_DIR={$ISSM_ DIR}/externalpackages/petsc/install/externalexternalpackages/PLAPACKR3248 set PLAPACK_DIR={$ISSM_TIER}/externalpackages/petsc/install/externalexternalpackages/PLAPACKR32 49 49 50 50 #BLACS 51 set BLACS_DIR={$ISSM_ DIR}/externalpackages/petsc/install/externalexternalpackages/blacs-dev/$ISSM_ARCH51 set BLACS_DIR={$ISSM_TIER}/externalpackages/petsc/install/externalexternalpackages/blacs-dev/$ISSM_ARCH 52 52 53 53 #sowing 54 set SOWING_DIR={$ISSM_ DIR}/externalpackages/sowing/install54 set SOWING_DIR={$ISSM_TIER}/externalpackages/sowing/install 55 55 56 56 #YAMS 57 set YAMS_DIR={$ISSM_ DIR}/externalpackages/yams/install57 set YAMS_DIR={$ISSM_TIER}/externalpackages/yams/install 58 58 59 59 #TEX2IM 60 set TEX2IM_DIR={$ISSM_ DIR}/externalpackages/tex2im/install60 set TEX2IM_DIR={$ISSM_TIER}/externalpackages/tex2im/install 61 61 62 62 #Chaco 63 set CHACO_DIR={$ISSM_ DIR}/externalpackages/chaco/install63 set CHACO_DIR={$ISSM_TIER}/externalpackages/chaco/install 64 64 65 65 #MeshPart 66 set MESHPART_DIR={$ISSM_ DIR}/externalpackages/meshpart/install66 set MESHPART_DIR={$ISSM_TIER}/externalpackages/meshpart/install 67 67 68 68 #SCOTCH 69 set SCOTCH_DIR={$ISSM_ DIR}/externalpackages/scotch/install69 set SCOTCH_DIR={$ISSM_TIER}/externalpackages/scotch/install 70 70 71 71 #Development packages 72 72 #automake 73 set AUTOMAKE_DIR={$ISSM_ DIR}/devpackages/automake/install73 set AUTOMAKE_DIR={$ISSM_TIER}/devpackages/automake/install 74 74 75 75 #autoconf 76 set AUTOCONF_DIR={$ISSM_ DIR}/devpackages/autoconf/install76 set AUTOCONF_DIR={$ISSM_TIER}/devpackages/autoconf/install 77 77 78 78 #borland … … 80 80 81 81 #ssh 82 set SSH_DIR={$ISSM_ DIR}/externalpackages/ssh82 set SSH_DIR={$ISSM_TIER}/externalpackages/ssh 83 83 84 84 #valgrind 85 set VALGRIND_DIR={$ISSM_ DIR}/externalpackages/valgrind/install/bin85 set VALGRIND_DIR={$ISSM_TIER}/externalpackages/valgrind/install/bin -
issm/trunk/etc/environment_variables.sh
r3984 r6088 1 1 # 2 2 # 3 #This routine can only be run if the ISSM_ DIR variable has been correctly set!3 #This routine can only be run if the ISSM_TIER variable has been correctly set! 4 4 # 5 5 # 6 6 7 7 #MATLAB 8 MATLAB_DIR="$ISSM_ DIR/externalpackages/matlab/install"8 MATLAB_DIR="$ISSM_TIER/externalpackages/matlab/install" 9 9 MATLAB_VERSION=R2008a 10 10 11 11 #MPI 12 MPI_DIR="$ISSM_ DIR/externalpackages/mpich2/install"12 MPI_DIR="$ISSM_TIER/externalpackages/mpich2/install" 13 13 14 14 #PETSC 15 PETSC_DIR="$ISSM_ DIR/externalpackages/petsc/install"15 PETSC_DIR="$ISSM_TIER/externalpackages/petsc/install" 16 16 17 17 #SLEPC 18 SLEPC_DIR="$ISSM_ DIR/externalpackages/slepc/install"18 SLEPC_DIR="$ISSM_TIER/externalpackages/slepc/install" 19 19 20 20 #Dakota 21 DAKOTA_DIR="$ISSM_ DIR/externalpackages/dakota/install"21 DAKOTA_DIR="$ISSM_TIER/externalpackages/dakota/install" 22 22 23 23 #Qhull 24 QHULL_DIR="$ISSM_ DIR/externalpackages/qhull/install"24 QHULL_DIR="$ISSM_TIER/externalpackages/qhull/install" 25 25 26 26 #Doxygen 27 DOXYGEN_DIR="$ISSM_ DIR/externalpackages/doxygen/install"27 DOXYGEN_DIR="$ISSM_TIER/externalpackages/doxygen/install" 28 28 29 29 #MTOC 30 MTOC_DIR="$ISSM_ DIR/externalpackages/mtoc/install"30 MTOC_DIR="$ISSM_TIER/externalpackages/mtoc/install" 31 31 32 32 #Triangle 33 TRIANGLE_DIR="$ISSM_ DIR/externalpackages/triangle/install"33 TRIANGLE_DIR="$ISSM_TIER/externalpackages/triangle/install" 34 34 35 35 #METIS 36 METIS_DIR="$ISSM_ DIR/externalpackages/metis/install"36 METIS_DIR="$ISSM_TIER/externalpackages/metis/install" 37 37 38 38 #BLAS 39 BLAS_DIR="$ISSM_ DIR/externalpackages/petsc/install/externalpackages/fblaslapack"39 BLAS_DIR="$ISSM_TIER/externalpackages/petsc/install/externalpackages/fblaslapack" 40 40 41 41 #LAPACK 42 LAPACK_DIR="$ISSM_ DIR/externalpackages/petsc/install/externalpackages/fblaslapack/$ISSM_ARCH"42 LAPACK_DIR="$ISSM_TIER/externalpackages/petsc/install/externalpackages/fblaslapack/$ISSM_ARCH" 43 43 44 44 #SCALAPACK 45 SCALAPACK_DIR="$ISSM_ DIR/externalpackages/petsc/install/externalpackages/SCALAPACK/$ISSM_ARCH"45 SCALAPACK_DIR="$ISSM_TIER/externalpackages/petsc/install/externalpackages/SCALAPACK/$ISSM_ARCH" 46 46 47 47 #PLAPACK 48 PLAPACK_DIR="$ISSM_ DIR/externalpackages/petsc/install/externalpackages/PLAPACKR32"48 PLAPACK_DIR="$ISSM_TIER/externalpackages/petsc/install/externalpackages/PLAPACKR32" 49 49 50 50 #BLACS 51 BLACS_DIR="$ISSM_ DIR/externalpackages/petsc/install/externalpackages/blacs-dev/$ISSM_ARCH"51 BLACS_DIR="$ISSM_TIER/externalpackages/petsc/install/externalpackages/blacs-dev/$ISSM_ARCH" 52 52 53 53 #sowing 54 SOWING_DIR="$ISSM_ DIR/externalpackages/sowing/install"54 SOWING_DIR="$ISSM_TIER/externalpackages/sowing/install" 55 55 56 56 #BLACS 57 BLACS_DIR="$ISSM_ DIR/externalpackages/petsc/install/externalpackages/blacs-dev/$ISSM_ARCH"57 BLACS_DIR="$ISSM_TIER/externalpackages/petsc/install/externalpackages/blacs-dev/$ISSM_ARCH" 58 58 59 59 #YAMS 60 YAMS_DIR="$ISSM_ DIR/externalpackages/yams/install"60 YAMS_DIR="$ISSM_TIER/externalpackages/yams/install" 61 61 62 62 #BAMG 63 BAMG_DIR="$ISSM_ DIR/externalpackages/bamg/install"63 BAMG_DIR="$ISSM_TIER/externalpackages/bamg/install" 64 64 65 65 #Chaco 66 CHACO_DIR="$ISSM_ DIR/externalpackages/chaco/install"66 CHACO_DIR="$ISSM_TIER/externalpackages/chaco/install" 67 67 68 68 #MeshPart 69 MESHPART_DIR="$ISSM_ DIR/externalpackages/meshpart/install"69 MESHPART_DIR="$ISSM_TIER/externalpackages/meshpart/install" 70 70 71 71 #SCOTCH 72 SCOTCH_DIR="$ISSM_ DIR/externalpackages/scotch/install"72 SCOTCH_DIR="$ISSM_TIER/externalpackages/scotch/install" 73 73 74 74 #Development packages 75 75 #automake 76 AUTOMAKE_DIR="$ISSM_ DIR/devpackages/automake/install"76 AUTOMAKE_DIR="$ISSM_TIER/devpackages/automake/install" 77 77 78 78 #autoconf 79 AUTOCONF_DIR="$ISSM_ DIR/devpackages/autoconf/install"79 AUTOCONF_DIR="$ISSM_TIER/devpackages/autoconf/install" 80 80 81 81 #borland … … 86 86 87 87 #TEX2IM 88 TEX2IM_DIR="$ISSM_ DIR/externalpackages/tex2im/install"88 TEX2IM_DIR="$ISSM_TIER/externalpackages/tex2im/install" 89 89 90 90 #sdk … … 92 92 93 93 #ssh 94 SSH_DIR="$ISSM_ DIR/externalpackages/ssh"94 SSH_DIR="$ISSM_TIER/externalpackages/ssh" 95 95 96 96 #valgrind 97 VALGRIND_DIR="$ISSM_ DIR/externalpackages/valgrind/install/bin"97 VALGRIND_DIR="$ISSM_TIER/externalpackages/valgrind/install/bin" 98 98 99 99 #graphviz 100 GRAPHVIZ_DIR="$ISSM_ DIR/externalpackages/graphviz/install/bin"100 GRAPHVIZ_DIR="$ISSM_TIER/externalpackages/graphviz/install/bin" 101 101 102 102 #cppcheck 103 CPPCHECK_DIR="$ISSM_ DIR/externalpackages/cppcheck/install"103 CPPCHECK_DIR="$ISSM_TIER/externalpackages/cppcheck/install" -
issm/trunk/externalpackages/README
r1060 r6088 2 2 3 3 4 1/ source the ISSM_ DIR/Etc/environment.sh file. This will set up all the necessary4 1/ source the ISSM_TIER/Etc/environment.sh file. This will set up all the necessary 5 5 environment variables in your shell. 6 6 -
issm/trunk/scripts/archive.sh
r2619 r6088 10 10 11 11 #Cleanup code 12 cd $ISSM_ DIR12 cd $ISSM_TIER 13 13 make clean 14 14 make distclean … … 18 18 19 19 #Create tar file, with today's date in the title; 20 cd $ISSM_ DIR/..20 cd $ISSM_TIER/.. 21 21 today=`today_date` 22 tar zcvf issm-3.0-$today.tar.gz `basename $ISSM_ DIR`22 tar zcvf issm-3.0-$today.tar.gz `basename $ISSM_TIER` -
issm/trunk/scripts/automakererun.sh
r3364 r6088 7 7 rm -rf aclocal.m4 8 8 echo "Calling alocal" 9 $ISSM_ DIR/devpackages/automake/install/bin/aclocal -I m49 $ISSM_TIER/devpackages/automake/install/bin/aclocal -I m4 10 10 echo "Calling autoconf" 11 $ISSM_ DIR/devpackages/autoconf/install/bin/autoconf11 $ISSM_TIER/devpackages/autoconf/install/bin/autoconf 12 12 echo "Calling autoheader" 13 $ISSM_ DIR/devpackages/autoconf/install/bin/autoheader13 $ISSM_TIER/devpackages/autoconf/install/bin/autoheader 14 14 echo "Calling automake" 15 $ISSM_ DIR/devpackages/automake/install/bin/automake -a15 $ISSM_TIER/devpackages/automake/install/bin/automake -a -
issm/trunk/scripts/createlinks.sh
r1 r6088 3 3 4 4 #go to ISSM main directory 5 cd $ISSM_ DIR5 cd $ISSM_TIER 6 6 7 7 #get path of runmes.m … … 10 10 #loop over the directories 11 11 for i in $FILES; do 12 cd $ISSM_ DIR$i13 ln -s $ISSM_ DIR/startup.m .14 cd $ISSM_ DIR12 cd $ISSM_TIER$i 13 ln -s $ISSM_TIER/startup.m . 14 cd $ISSM_TIER 15 15 done -
issm/trunk/scripts/dailyrun.sh
r5591 r6088 54 54 #Prepare run 55 55 #Windows hack for startup.m {{{1 56 #windows environments: ISSM_ DIR_WIN variable not correctly picked up when using57 #the cron job. just get startup to take the ISSM_ DIR variable as the pwd:56 #windows environments: ISSM_TIER_WIN variable not correctly picked up when using 57 #the cron job. just get startup to take the ISSM_TIER variable as the pwd: 58 58 if [ "$OS" = "winxp32" ] 59 59 then 60 cat startup.m | sed 's/clear status/clear status; ISSM_ DIR=pwd;/g' > startup.m.bak60 cat startup.m | sed 's/clear status/clear status; ISSM_TIER=pwd;/g' > startup.m.bak 61 61 mv startup.m.bak startup.m 62 62 fi 63 63 #}}} 64 64 #create softlink to startup {{{1 65 cd $ISSM_ DIR/test/NightlyRun/66 ln -s $ISSM_ DIR/startup.m .65 cd $ISSM_TIER/test/NightlyRun/ 66 ln -s $ISSM_TIER/startup.m . 67 67 #}}} 68 68 #Create dailylog directory and info.log {{{1 … … 70 70 INSTALL_TIME=$(timer) 71 71 ELAPSED_INSTALL=$(timer $START_TIME) 72 rm -rf $ISSM_ DIR/dailylog73 mkdir $ISSM_ DIR/dailylog74 cat << END > $ISSM_ DIR/dailylog/info.log72 rm -rf $ISSM_TIER/dailylog 73 mkdir $ISSM_TIER/dailylog 74 cat << END > $ISSM_TIER/dailylog/info.log 75 75 today: $(echo $TODAY) 76 76 user: $(echo $USER) … … 95 95 do 96 96 #Launch matlab and the daily run script 97 cat > $ISSM_ DIR/dailylog/matlab_run$i.m << EOF97 cat > $ISSM_TIER/dailylog/matlab_run$i.m << EOF 98 98 warning off %necessary to avoid a info.log of several Go for parallel runs 99 99 try, 100 cd $ISSM_ DIR/test/NightlyRun100 cd $ISSM_TIER/test/NightlyRun 101 101 startup; 102 102 $(if [ "$NROPTIONS" = "" ] … … 111 111 directory=strsplit(pwd,'/'); 112 112 message=getReport(me) 113 fid=fopen([ISSM_ DIR '/dailylog/matlaberror.log'], 'at');113 fid=fopen([ISSM_TIER '/dailylog/matlaberror.log'], 'at'); 114 114 fprintf(fid,'\nMatlab error occured in: %s\n\n',directory{end}); 115 115 fprintf(fid,'%s',message); … … 121 121 122 122 #Start run from dailylog directory 123 cd $ISSM_ DIR/dailylog/123 cd $ISSM_TIER/dailylog/ 124 124 125 125 #Start test … … 132 132 #}}} 133 133 #concatenate all reports {{{1 134 cd $ISSM_ DIR/dailylog/134 cd $ISSM_TIER/dailylog/ 135 135 mv matlab_log1.log matlab_log.log 136 136 for (( i=2;i<=$NUMCPUS_RUN;i++ )) … … 149 149 ELAPSED_RUN=$(timer $INSTALL_TIME) 150 150 ELAPSED_TOTAL=$(timer $START_TIME) 151 cat << END >> $ISSM_ DIR/dailylog/info.log151 cat << END >> $ISSM_TIER/dailylog/info.log 152 152 elapsed_run: $(echo $ELAPSED_RUN) 153 153 elapsed_total: $(echo $ELAPSED_TOTAL) … … 158 158 #Send Report 159 159 #Build html report {{{1 160 cd $ISSM_ DIR/dailylog/160 cd $ISSM_TIER/dailylog/ 161 161 sh ../scripts/report.sh 162 ln -s $ISSM_ DIR/dailylog/report.html $INIT_PATH163 echo "html report located in $ISSM_ DIR/dailylog/report.html and $INIT_PATH/report.html"162 ln -s $ISSM_TIER/dailylog/report.html $INIT_PATH 163 echo "html report located in $ISSM_TIER/dailylog/report.html and $INIT_PATH/report.html" 164 164 #}}} -
issm/trunk/scripts/eraselinks.sh
r1 r6088 3 3 4 4 #go to ISSM main directory 5 cd $ISSM_ DIR5 cd $ISSM_TIER 6 6 7 7 #get path of runmes.m … … 10 10 #loop over the directories 11 11 for i in $FILES; do 12 cd $ISSM_ DIR$i12 cd $ISSM_TIER$i 13 13 rm startup.m 14 cd $ISSM_ DIR14 cd $ISSM_TIER 15 15 done -
issm/trunk/scripts/getloc.sh
r4909 r6088 3 3 4 4 #get Matlab number of lines 5 cd $ISSM_ DIR/src/m5 cd $ISSM_TIER/src/m 6 6 M_LOC=$(find . -name "*.m" -exec wc -l '{}' \; | awk '{ sum += $1 } END { print sum}'); 7 7 echo "Matlab code: $M_LOC" 8 8 9 9 #get C/CPP number of lines 10 cd $ISSM_ DIR/src10 cd $ISSM_TIER/src 11 11 CPP_LOC=$(find . -name "*.cpp" -exec wc -l '{}' \; | awk '{ sum += $1 } END { print sum}'); 12 12 echo "C++ code: $CPP_LOC" -
issm/trunk/scripts/quickinstall.sh
r898 r6088 9 9 10 10 #go to root 11 cd $ISSM_ DIR11 cd $ISSM_TIER 12 12 HERE=`pwd`; 13 13 14 #check that ISSM_ DIR is correctly set up15 if [ $HERE != $ISSM_ DIR ]; then14 #check that ISSM_TIER is correctly set up 15 if [ $HERE != $ISSM_TIER ]; then 16 16 17 17 cd .. … … 25 25 26 26 #ISSM 27 export ISSM_ DIR=` pwd `28 source $ISSM_ DIR/etc/environment.sh27 export ISSM_TIER=` pwd ` 28 source $ISSM_TIER/etc/environment.sh 29 29 30 30 ********************************************************************************************************** … … 42 42 cd ../triangle 43 43 sh install.sh 44 cd $ISSM_ DIR44 cd $ISSM_TIER 45 45 46 46 #2: install automake and autoconf -
issm/trunk/scripts/report.sh
r5591 r6088 48 48 49 49 #create some variables 50 if [ $(ls -1 $ISSM_ DIR/bin | wc -l) -le 20 ];50 if [ $(ls -1 $ISSM_TIER/bin | wc -l) -le 20 ]; 51 51 then 52 52 IS_INSTALL=0 -
issm/trunk/scripts/run.sh
r5077 r6088 6 6 MATLAB_VERSION="7.6" #7.2,7.4,7.6 and 7.8 7 7 #create softlink to startup {{{1 8 cd $ISSM_ DIR/test/NightlyRun/9 ln -s $ISSM_ DIR/startup.m .8 cd $ISSM_TIER/test/NightlyRun/ 9 ln -s $ISSM_TIER/startup.m . 10 10 #}}} 11 11 … … 14 14 do 15 15 #Launch matlab and the daily run script 16 cat > $ISSM_ DIR/dailylog/matlab_run$i.m << EOF16 cat > $ISSM_TIER/dailylog/matlab_run$i.m << EOF 17 17 warning off %necessary to avoid a daily.log of several Go for parallel runs 18 18 try, 19 cd $ISSM_ DIR/test/NightlyRun19 cd $ISSM_TIER/test/NightlyRun 20 20 startup; 21 21 $(if [ "$NROPTIONS" = "" ] … … 30 30 directory=strsplit(pwd,'/'); 31 31 message=getReport(me) 32 fid=fopen([ISSM_ DIR '/dailylog/matlaberror.log'], 'at');32 fid=fopen([ISSM_TIER '/dailylog/matlaberror.log'], 'at'); 33 33 fprintf(fid,'\nMatlab error occured in: %s\n\n',directory{end}); 34 34 fprintf(fid,'%s',message); … … 39 39 40 40 #Start run from dailylog directory 41 cd $ISSM_ DIR/dailylog/41 cd $ISSM_TIER/dailylog/ 42 42 43 43 #Start test -
issm/trunk/scripts/windowsbuild.sh
r1427 r6088 12 12 today=`today_date` 13 13 14 cd $ISSM_ DIR/bin14 cd $ISSM_TIER/bin 15 15 16 16 #Filter out .svn files -
issm/trunk/src/c/modules/MeshProfileIntersectionx/SegmentIntersect.cpp
r5239 r6088 6 6 int SegmentIntersect(double* palpha, double* pbeta, double* x1, double* y1, double* x2, double* y2){ 7 7 8 /*See ISSM_ DIR/src/m/utils/Geometry/SegIntersect.m for matlab routine from which we take this routine: */8 /*See ISSM_TIER/src/m/utils/Geometry/SegIntersect.m for matlab routine from which we take this routine: */ 9 9 10 10 /*output: */ -
issm/trunk/src/m/model/modeldefault/modeldefault_process.m
r5088 r6088 7 7 %retrieve some paths 8 8 global ISSM_DIR 9 modeldatapath= '/u/astrid-r1b/larour/ModelData';9 modeldatapath=[ISSM_DIR '/projects/ModelData']; 10 10 11 11 %initialize output … … 20 20 21 21 %iceshelves 22 iceshelves=[ISSM_DIR '/ ../models/Antarctica/Exp_Par/Iceshelves.exp'];22 iceshelves=[ISSM_DIR '/projects/Exp/Antarctica.exp']); 23 23 optionstruct.iceshelves=getfieldvalue(options,'iceshelves',iceshelves); 24 24 disp(sprintf(' %-18s: %s','iceshelves',optionstruct.iceshelves)); 25 25 26 26 %islands 27 islands=[ISSM_DIR '/ ../models/Antarctica/Exp_Par/Islands.exp'];27 islands=[ISSM_DIR '/projects/Exp/Antarctica.exp']; 28 28 optionstruct.islands=getfieldvalue(options,'islands',islands); 29 29 disp(sprintf(' %-18s: %s','islands',optionstruct.islands)); -
issm/trunk/src/m/model/modis.m
r3260 r6088 6 6 % 7 7 8 global ISSM_ DIR8 global ISSM_TIER 9 9 10 10 %find gdal coordinates … … 16 16 17 17 %Get path to gdal binaries 18 path_gdal=[ISSM_ DIR '/externalpackages/gdal/install/bin/'];18 path_gdal=[ISSM_TIER '/externalpackages/gdal/install/bin/']; 19 19 20 20 %Was gdal compiled? 21 21 if ~exist([path_gdal 'gdal_translate']), 22 error(['modis error message: GDAL library needs to be compiled to use this routine. Compile GDAL in ' ISSM_ DIR '/externalpackages/gdal to use this routine.']);22 error(['modis error message: GDAL library needs to be compiled to use this routine. Compile GDAL in ' ISSM_TIER '/externalpackages/gdal to use this routine.']); 23 23 end 24 24 -
issm/trunk/src/m/model/multiplequeue/BuildMultipleQueueingScriptGeneric.m
r5949 r6088 5 5 % BuildMultipleQueueingScriptGeneric(executionpath,codepath) 6 6 7 global ISSM_ DIR7 global ISSM_TIER 8 8 9 9 -
issm/trunk/src/m/model/plot/applyoptions.m
r5867 r6088 279 279 %box off 280 280 if strcmpi(md.hemisphere,'n') | strcmpi(md.hemisphere,'north'), 281 A=expread([ ISSM_DIR ' /../models/Greenland/Exp_Par/DomainOutline.exp']);281 A=expread([ ISSM_DIR 'projects/Exp/Greenland.exp']); 282 282 elseif strcmpi(md.hemisphere,'s') | strcmpi(md.hemisphere,'south'), 283 A=expread([ ISSM_DIR '/ ../models/Antarctica/Exp_Par/DomainOutline.exp']);283 A=expread([ ISSM_DIR '/projects/Exp/Antarctica.exp']); 284 284 else 285 285 error('applyoptions error message: hemisphere not defined'); -
issm/trunk/src/m/model/plot/plotmodel.m
r3338 r6088 2 2 %At command prompt, type plotdoc for help on documentation. 3 3 4 global ISSM_ DIR5 if isempty(ISSM_ DIR),6 error('ISSM_ DIR variable got erased! This variable is needed to run Ice code correctly. Please rerun your startup file.');4 global ISSM_TIER 5 if isempty(ISSM_TIER), 6 error('ISSM_TIER variable got erased! This variable is needed to run Ice code correctly. Please rerun your startup file.'); 7 7 end 8 8 -
issm/trunk/src/m/model/radarpower.m
r2884 r6088 9 9 % md=radarpower(md,hemisphere,xlim,ylim,highres) 10 10 11 global ISSM_ DIR11 global ISSM_TIER 12 12 global MODELDATA 13 13 … … 23 23 24 24 %Get path to gdal binaries 25 path_gdal=[ISSM_ DIR '/externalpackages/gdal/install/bin/'];25 path_gdal=[ISSM_TIER '/externalpackages/gdal/install/bin/']; 26 26 27 27 %Was gdal compiled? 28 28 if ~exist([path_gdal 'gdal_translate']), 29 error(['radarpower error message: GDAL library needs to be compiled to use this routine. Compile GDAL in ' ISSM_ DIR '/externalpackages/gdal to use this routine.']);29 error(['radarpower error message: GDAL library needs to be compiled to use this routine. Compile GDAL in ' ISSM_TIER '/externalpackages/gdal to use this routine.']); 30 30 end 31 31 -
issm/trunk/src/m/model/solve.m
r5954 r6088 15 15 16 16 %some checks on list of arguments 17 global ISSM_ DIR17 global ISSM_TIER 18 18 19 19 %recover options -
issm/trunk/src/m/qmu/postqmu.m
r5243 r6088 4 4 %Deal with dakota output results in files. 5 5 6 global ISSM_ DIR;6 global ISSM_TIER; 7 7 8 8 % check to see if dakota returned errors in the err file -
issm/trunk/src/m/qmu/preqmu.m
r5487 r6088 18 18 % runmpi: (John?) 19 19 20 global ISSM_ DIR;20 global ISSM_TIER; 21 21 22 22 displaystring(md.verbose,'\n%s\n','preprocessing dakota inputs'); -
issm/trunk/src/m/utils/DataProcessing/TracksToMatrix.m
r1177 r6088 20 20 % See also: CREATEDATABOUNDARIES, CREATEDATAMATRIX 21 21 22 global ISSM_ DIR22 global ISSM_TIER 23 23 24 24 %some checks … … 28 28 29 29 %Add path to dace 30 addpath([ISSM_ DIR '/externalpackages/dace/install'])30 addpath([ISSM_TIER '/externalpackages/dace/install']) 31 31 32 32 %First create the x_m and y_m fot the matrix … … 84 84 85 85 %remove DACE path 86 rmpath([ISSM_ DIR '/externalpackages/dace/install']);86 rmpath([ISSM_TIER '/externalpackages/dace/install']); -
issm/trunk/src/m/utils/Mesh/BamgCall.m
r2890 r6088 15 15 % md=BamgCall(md,md.vel_obs,1500,10^8,1.3,0.9); 16 16 17 global ISSM_ DIR17 global ISSM_TIER 18 18 19 19 %2d geometric parameter (do not change) -
issm/trunk/src/m/utils/Mesh/BamgCallFromMetric.m
r2953 r6088 11 11 % md=BamgCall(md,metric,1500,10^8,1.3,0.9); 12 12 13 global ISSM_ DIR13 global ISSM_TIER 14 14 15 15 %2d geometric parameter (do not change) -
issm/trunk/src/m/utils/Mesh/YamsCall.m
r2744 r6088 15 15 % md=YamsCall(md,md.vel_obs,1500,10^8,1.3,0.9); 16 16 17 global ISSM_ DIR17 global ISSM_TIER 18 18 19 19 %2d geometric parameter (do not change) -
issm/trunk/src/m/utils/OS/clearall.m
r2270 r6088 1 %script that erases all variables except ISSM_ DIR1 %script that erases all variables except ISSM_TIER 2 2 3 3 %get all localvariables 4 4 Lvariables=evalin('base','who'); 5 5 6 %remove ISSM_ DIR from this list7 Lvariables=Lvariables(find(~strcmp(Lvariables,'ISSM_ DIR')));6 %remove ISSM_TIER from this list 7 Lvariables=Lvariables(find(~strcmp(Lvariables,'ISSM_TIER'))); 8 8 9 9 %clear all -
issm/trunk/src/m/utils/OS/issmscpin.m
r3150 r6088 32 32 %use the putty project pscp.exe: it should be in the path. 33 33 34 %get ISSM_ DIR variable35 [status,ISSM_ DIR]=system('echo [%ISSM_DIR_WIN%]');34 %get ISSM_TIER variable 35 [status,ISSM_TIER]=system('echo [%ISSM_TIER_WIN%]'); 36 36 if status, 37 error('scpin error message: could not find ISSM_ DIR_WIN envirnoment variable');37 error('scpin error message: could not find ISSM_TIER_WIN envirnoment variable'); 38 38 end 39 ISSM_ DIR=ISSM_DIR(2:end-2);39 ISSM_TIER=ISSM_TIER(2:end-2); 40 40 41 41 username=input('Username: (quoted string) '); … … 43 43 44 44 for i=1:numel(packages), 45 [status,result]=system([ISSM_ DIR '/externalpackages/ssh/pscp.exe -l "' username '" -pw "' password '" ' host ':' path '/' packages{i} ' ./']);45 [status,result]=system([ISSM_TIER '/externalpackages/ssh/pscp.exe -l "' username '" -pw "' password '" ' host ':' path '/' packages{i} ' ./']); 46 46 if status, 47 47 error('scpin error message: could not call putty pscp'); -
issm/trunk/src/m/utils/OS/issmscpout.m
r3150 r6088 23 23 %use the putty project pscp.exe: it should be in the path. 24 24 25 %get ISSM_ DIR variable26 [status,ISSM_ DIR]=system('echo [%ISSM_DIR_WIN%]');25 %get ISSM_TIER variable 26 [status,ISSM_TIER]=system('echo [%ISSM_TIER_WIN%]'); 27 27 if status, 28 error('scpout error message: could not find ISSM_ DIR_WIN envirnoment variable');28 error('scpout error message: could not find ISSM_TIER_WIN envirnoment variable'); 29 29 end 30 ISSM_ DIR=ISSM_DIR(2:end-2);30 ISSM_TIER=ISSM_TIER(2:end-2); 31 31 32 32 username=input('Username: (quoted string) '); … … 34 34 35 35 for i=1:numel(packages), 36 [status,result]=system([ISSM_ DIR '/externalpackages/ssh/pscp.exe -l "' username '" -pw "' password '" ' packages{i} ' ' host ':' path]);36 [status,result]=system([ISSM_TIER '/externalpackages/ssh/pscp.exe -l "' username '" -pw "' password '" ' packages{i} ' ' host ':' path]); 37 37 if status, 38 38 error('scpout error message: could not call putty pscp'); -
issm/trunk/src/m/utils/OS/issmssh.m
r3150 r6088 15 15 %use the putty project plink.exe: it should be in the path. 16 16 17 %get ISSM_ DIR variable18 [status,ISSM_ DIR]=system('echo [%ISSM_DIR_WIN%]');17 %get ISSM_TIER variable 18 [status,ISSM_TIER]=system('echo [%ISSM_TIER_WIN%]'); 19 19 if status, 20 error('issmssh error message: could not find ISSM_ DIR_WIN envirnoment variable');20 error('issmssh error message: could not find ISSM_TIER_WIN envirnoment variable'); 21 21 end 22 ISSM_ DIR=ISSM_DIR(2:end-2);22 ISSM_TIER=ISSM_TIER(2:end-2); 23 23 24 24 username=input('Username: (quoted string) '); 25 25 password=input('Password: (quoted string) '); 26 26 27 system([ISSM_ DIR '/externalpackages/ssh/plink.exe -ssh -l "' username '" -pw "' password '" ' host ' "' command '"']);27 system([ISSM_TIER '/externalpackages/ssh/plink.exe -ssh -l "' username '" -pw "' password '" ' host ' "' command '"']); 28 28 29 29 else -
issm/trunk/startup.m
r6071 r6088 9 9 % Copyright Jet Propulsion Laboratory. 10 10 11 global ISSM_ DIR11 global ISSM_TIER 12 12 lastwarn(''); % clear the last warning to focus on the warnings of the ISSM path 13 13 14 %Recover ISSM_ DIR14 %Recover ISSM_TIER 15 15 if ispc, 16 [status,ISSM_ DIR]=system('echo [%ISSM_DIR_WIN%]');16 [status,ISSM_TIER]=system('echo [%ISSM_TIER_WIN%]'); 17 17 else 18 [status,ISSM_ DIR]=system('echo $ISSM_DIR');18 [status,ISSM_TIER]=system('echo $ISSM_TIER'); 19 19 end 20 20 if status~=0, 21 error(' issmdir error message: problem when running ''echo $ISSM_DIR'' shell command');21 error('startup error message: problem when running ''echo $ISSM_TIER'' shell command'); 22 22 end 23 if (length(ISSM_ DIR)<=1),24 error('issmdir error message: ''ISSM_ DIR'' environment variable is empty! You should define ISSM_DIR in your .cshrc or .bashrc!');23 if (length(ISSM_TIER)<=1), 24 error('issmdir error message: ''ISSM_TIER'' environment variable is empty! You should define ISSM_TIER in your .cshrc or .bashrc!'); 25 25 end 26 26 %get rid of useless symbols in the name … … 30 30 %Now add all issm code paths necessary to run issm smoothly. 31 31 %We capture the error output, so that we can warn the user to update 32 %the variable ISSM_ DIR in this file, in case it is not correctly setup.32 %the variable ISSM_TIER in this file, in case it is not correctly setup. 33 33 34 34 %ISSM path 35 addpath([ISSM_ DIR '/src/m/utils/']); %loads genpath_ice36 addpath([ISSM_ DIR '/etc']);37 addpath([ISSM_ DIR '/doc']);38 addpath([ISSM_ DIR '/bin']);39 addpath(genpath_ice([ISSM_ DIR '/src/m']));40 addpath(genpath_ice([ISSM_ DIR '/src/pro']));41 addpath(genpath_ice([ISSM_ DIR '/externalpackages/subplotSpacing']));42 addpath(genpath_ice([ISSM_ DIR '/externalpackages/scotch']));35 addpath([ISSM_TIER '/src/m/utils/']); %loads genpath_ice 36 addpath([ISSM_TIER '/etc']); 37 addpath([ISSM_TIER '/doc']); 38 addpath([ISSM_TIER '/bin']); 39 addpath(genpath_ice([ISSM_TIER '/src/m'])); 40 addpath(genpath_ice([ISSM_TIER '/src/pro'])); 41 addpath(genpath_ice([ISSM_TIER '/externalpackages/subplotSpacing'])); 42 addpath(genpath_ice([ISSM_TIER '/externalpackages/scotch'])); 43 43 44 44 %Check on any warning messages that might indicate that the paths were not correct. 45 45 if ~isempty(lastwarn), 46 fprintf('\n Error trying to setup ''ISSM'' code paths. Try and update the ISSM_ DIR variable in your .cshrc or .bashrc!\n');46 fprintf('\n Error trying to setup ''ISSM'' code paths. Try and update the ISSM_TIER variable in your .cshrc or .bashrc!\n'); 47 47 fprintf(' ''ISSM'' will not work at all until this is resolved\n\n'); 48 48 else … … 75 75 error('startup error message: problem when running ''echo $USER'' shell command'); 76 76 end 77 if exist([ISSM_ DIR '/src/m/contrib/' USERNAME],'dir'),78 addpath([ISSM_ DIR '/src/m/contrib/' USERNAME]);77 if exist([ISSM_TIER '/src/m/contrib/' USERNAME],'dir'), 78 addpath([ISSM_TIER '/src/m/contrib/' USERNAME]); 79 79 end -
issm/trunk/test/NightlyRun/runme.m
r5501 r6088 30 30 % md=runme('id',102,'procedure','model'); 31 31 32 %use ISSM_ DIR generated by startup.m33 global ISSM_ DIR32 %use ISSM_TIER generated by startup.m 33 global ISSM_TIER 34 34 35 35 %Check inputs … … 162 162 message=getReport(me2); 163 163 if strcmpi(output,'nightly') 164 fid=fopen([ISSM_ DIR '/nightlylog/matlaberror.log'], 'at');164 fid=fopen([ISSM_TIER '/nightlylog/matlaberror.log'], 'at'); 165 165 fprintf(fid,'%s',message); 166 166 fprintf(fid,'\n------------------------------------------------------------------\n'); … … 168 168 disp(sprintf(['FAILURE difference: N/A test id: %i test name: %s field: %s'],id,id_string,fieldname)); 169 169 elseif strcmpi(output,'daily'); 170 fid=fopen([ISSM_ DIR '/dailylog/matlaberror.log'], 'at');170 fid=fopen([ISSM_TIER '/dailylog/matlaberror.log'], 'at'); 171 171 fprintf(fid,'%s',message); 172 172 fprintf(fid,'\n------------------------------------------------------------------\n'); … … 186 186 message=getReport(me); 187 187 if strcmpi(output,'nightly') 188 fid=fopen([ISSM_ DIR '/nightlylog/matlaberror.log'], 'at');188 fid=fopen([ISSM_TIER '/nightlylog/matlaberror.log'], 'at'); 189 189 fprintf(fid,'%s',message); 190 190 fprintf(fid,'\n------------------------------------------------------------------\n'); … … 192 192 disp(sprintf(['FAILURE difference: N/A test id: %i test name: %s field: %s'],id,id_string,'N/A')); 193 193 elseif strcmpi(output,'daily'); 194 fid=fopen([ISSM_ DIR '/dailylog/matlaberror.log'], 'at');194 fid=fopen([ISSM_TIER '/dailylog/matlaberror.log'], 'at'); 195 195 fprintf(fid,'%s',message); 196 196 fprintf(fid,'\n------------------------------------------------------------------\n'); -
issm/trunk/test/NightlyRun/test1101.m
r5760 r6088 50 50 set(gcf,'Color','w') 51 51 printmodel(['ismipapattynvx' num2str(L)],'png','margin','on','marginsize',25,'frame','off','resolution',1.5,'hardcopy','off'); 52 system(['mv ismipapattynvx' num2str(L) '.png ' ISSM_DIR '/ ../website/doc_pdf/validation/Images/ISMIP/TestA ']);52 system(['mv ismipapattynvx' num2str(L) '.png ' ISSM_DIR '/website/doc_pdf/validation/Images/ISMIP/TestA ']); 53 53 end 54 54 plotmodel(md,'data',vy,'layer#all',md.numlayers,'xlim',[0 L/10^3],'ylim',[0 L/10^3],'unit','km') … … 56 56 set(gcf,'Color','w') 57 57 printmodel(['ismipapattynvy' num2str(L)],'png','margin','on','marginsize',25,'frame','off','resolution',1.5,'hardcopy','off'); 58 system(['mv ismipapattynvy' num2str(L) '.png ' ISSM_DIR '/ ../website/doc_pdf/validation/Images/ISMIP/TestA ']);58 system(['mv ismipapattynvy' num2str(L) '.png ' ISSM_DIR '/website/doc_pdf/validation/Images/ISMIP/TestA ']); 59 59 end 60 60 plotmodel(md,'data',vz,'layer#all',md.numlayers,'xlim',[0 L/10^3],'ylim',[0 L/10^3],'unit','km') … … 62 62 set(gcf,'Color','w') 63 63 printmodel(['ismipapattynvz' num2str(L)],'png','margin','on','marginsize',25,'frame','off','resolution',1.5,'hardcopy','off'); 64 system(['mv ismipapattynvz' num2str(L) '.png ' ISSM_DIR '/ ../website/doc_pdf/validation/Images/ISMIP/TestA ']);64 system(['mv ismipapattynvz' num2str(L) '.png ' ISSM_DIR '/website/doc_pdf/validation/Images/ISMIP/TestA ']); 65 65 end 66 66 … … 87 87 set(gcf,'Color','w') 88 88 printmodel(['ismipapattynvxsec' num2str(L)],'png','margin','on','marginsize',25,'frame','off','resolution',1.5,'hardcopy','off'); 89 system(['mv ismipapattynvxsec' num2str(L) '.png ' ISSM_DIR '/ ../website/doc_pdf/validation/Images/ISMIP/TestA ']);89 system(['mv ismipapattynvxsec' num2str(L) '.png ' ISSM_DIR '/website/doc_pdf/validation/Images/ISMIP/TestA ']); 90 90 end 91 91 end … … 96 96 set(gcf,'Color','w') 97 97 printmodel('ismipapattynminvx','png','margin','on','marginsize',25,'frame','off','resolution',1.5,'hardcopy','off'); 98 system(['mv ismipapattynminvx.png ' ISSM_DIR '/ ../website/doc_pdf/validation/Images/ISMIP/TestA ']);98 system(['mv ismipapattynminvx.png ' ISSM_DIR '/website/doc_pdf/validation/Images/ISMIP/TestA ']); 99 99 end 100 100 plot([5 10 20 40 80 160],maxvx);ylim([0 120]);xlim([0 160]) … … 102 102 set(gcf,'Color','w') 103 103 printmodel('ismipapattynmaxvx','png','margin','on','marginsize',25,'frame','off','resolution',1.5,'hardcopy','off'); 104 system(['mv ismipapattynmaxvx.png ' ISSM_DIR '/ ../website/doc_pdf/validation/Images/ISMIP/TestA ']);104 system(['mv ismipapattynmaxvx.png ' ISSM_DIR '/website/doc_pdf/validation/Images/ISMIP/TestA ']); 105 105 end 106 106 %Fields and tolerances to track changes -
issm/trunk/test/NightlyRun/test1102.m
r5606 r6088 65 65 set(gcf,'Color','w') 66 66 printmodel(['ismipastokesvx' num2str(L)],'png','margin','on','marginsize',25,'frame','off','resolution',1.5,'hardcopy','off'); 67 system(['mv ismipastokesvx' num2str(L) '.png ' ISSM_DIR '/ ../website/doc_pdf/validation/Images/ISMIP/TestA ']);67 system(['mv ismipastokesvx' num2str(L) '.png ' ISSM_DIR '/website/doc_pdf/validation/Images/ISMIP/TestA ']); 68 68 end 69 69 plotmodel(md,'data',vy,'layer#all',md.numlayers,'xlim',[0 L/10^3],'ylim',[0 L/10^3],'unit','km','figure',3) … … 71 71 set(gcf,'Color','w') 72 72 printmodel(['ismipastokesvy' num2str(L)],'png','margin','on','marginsize',25,'frame','off','resolution',1.5,'hardcopy','off'); 73 system(['mv ismipastokesvy' num2str(L) '.png ' ISSM_DIR '/ ../website/doc_pdf/validation/Images/ISMIP/TestA ']);73 system(['mv ismipastokesvy' num2str(L) '.png ' ISSM_DIR '/website/doc_pdf/validation/Images/ISMIP/TestA ']); 74 74 end 75 75 plotmodel(md,'data',vz,'layer#all',md.numlayers,'xlim',[0 L/10^3],'ylim',[0 L/10^3],'unit','km','figure',4) … … 77 77 set(gcf,'Color','w') 78 78 printmodel(['ismipastokesvz' num2str(L)],'png','margin','on','marginsize',25,'frame','off','resolution',1.5,'hardcopy','off'); 79 system(['mv ismipastokesvz' num2str(L) '.png ' ISSM_DIR '/ ../website/doc_pdf/validation/Images/ISMIP/TestA ']);79 system(['mv ismipastokesvz' num2str(L) '.png ' ISSM_DIR '/website/doc_pdf/validation/Images/ISMIP/TestA ']); 80 80 end 81 81 … … 102 102 set(gcf,'Color','w') 103 103 printmodel(['ismipastokesvxsec' num2str(L)],'png','margin','on','marginsize',25,'frame','off','resolution',1.5,'hardcopy','off'); 104 system(['mv ismipastokesvxsec' num2str(L) '.png ' ISSM_DIR '/ ../website/doc_pdf/validation/Images/ISMIP/TestA ']);104 system(['mv ismipastokesvxsec' num2str(L) '.png ' ISSM_DIR '/website/doc_pdf/validation/Images/ISMIP/TestA ']); 105 105 end 106 106 end … … 111 111 set(gcf,'Color','w') 112 112 printmodel('ismipastokesminvx','png','margin','on','marginsize',25,'frame','off','resolution',1.5,'hardcopy','off'); 113 system(['mv ismipastokesminvx.png ' ISSM_DIR '/ ../website/doc_pdf/validation/Images/ISMIP/TestA ']);113 system(['mv ismipastokesminvx.png ' ISSM_DIR '/website/doc_pdf/validation/Images/ISMIP/TestA ']); 114 114 end 115 115 plot([5 10 20 40 80 160],maxvx);ylim([0 120]) … … 117 117 set(gcf,'Color','w') 118 118 printmodel('ismipastokesmaxvx','png','margin','on','marginsize',25,'frame','off','resolution',1.5,'hardcopy','off'); 119 system(['mv ismipastokesmaxvx.png ' ISSM_DIR '/ ../website/doc_pdf/validation/Images/ISMIP/TestA ']);119 system(['mv ismipastokesmaxvx.png ' ISSM_DIR '/website/doc_pdf/validation/Images/ISMIP/TestA ']); 120 120 end 121 121 %Fields and tolerances to track changes -
issm/trunk/test/NightlyRun/test1103.m
r5760 r6088 48 48 set(gcf,'Color','w') 49 49 printmodel(['ismipbpattynvx' num2str(L)],'png','margin','on','marginsize',25,'frame','off','resolution',1.5,'hardcopy','off'); 50 system(['mv ismipbpattynvx' num2str(L) '.png ' ISSM_DIR '/ ../website/doc_pdf/validation/Images/ISMIP/TestB ']);50 system(['mv ismipbpattynvx' num2str(L) '.png ' ISSM_DIR '/website/doc_pdf/validation/Images/ISMIP/TestB ']); 51 51 end 52 52 plotmodel(md,'data',vz,'layer#all',md.numlayers,'xlim',[0 L/10^3],'ylim',[0 L/10^3],'unit','km') … … 54 54 set(gcf,'Color','w') 55 55 printmodel(['ismipbpattynvz' num2str(L)],'png','margin','on','marginsize',25,'frame','off','resolution',1.5,'hardcopy','off'); 56 system(['mv ismipbpattynvz' num2str(L) '.png ' ISSM_DIR '/ ../website/doc_pdf/validation/Images/ISMIP/TestB ']);56 system(['mv ismipbpattynvz' num2str(L) '.png ' ISSM_DIR '/website/doc_pdf/validation/Images/ISMIP/TestB ']); 57 57 end 58 58 … … 79 79 set(gcf,'Color','w') 80 80 printmodel(['ismipbpattynvxsec' num2str(L)],'png','margin','on','marginsize',25,'frame','off','resolution',1.5,'hardcopy','off'); 81 system(['mv ismipbpattynvxsec' num2str(L) '.png ' ISSM_DIR '/ ../website/doc_pdf/validation/Images/ISMIP/TestB ']);81 system(['mv ismipbpattynvxsec' num2str(L) '.png ' ISSM_DIR '/website/doc_pdf/validation/Images/ISMIP/TestB ']); 82 82 end 83 83 end … … 88 88 set(gcf,'Color','w') 89 89 printmodel('ismipbpattynminvx','png','margin','on','marginsize',25,'frame','off','resolution',1.5,'hardcopy','off'); 90 system(['mv ismipbpattynminvx.png ' ISSM_DIR '/ ../website/doc_pdf/validation/Images/ISMIP/TestB ']);90 system(['mv ismipbpattynminvx.png ' ISSM_DIR '/website/doc_pdf/validation/Images/ISMIP/TestB ']); 91 91 end 92 92 plot([5 10 20 40 80 160],maxvx);ylim([0 120]);xlim([0 160]) … … 94 94 set(gcf,'Color','w') 95 95 printmodel('ismipbpattynmaxvx','png','margin','on','marginsize',25,'frame','off','resolution',1.5,'hardcopy','off'); 96 system(['mv ismipbpattynmaxvx.png ' ISSM_DIR '/ ../website/doc_pdf/validation/Images/ISMIP/TestB ']);96 system(['mv ismipbpattynmaxvx.png ' ISSM_DIR '/website/doc_pdf/validation/Images/ISMIP/TestB ']); 97 97 end 98 98 %Fields and tolerances to track changes -
issm/trunk/test/NightlyRun/test1105.m
r5606 r6088 74 74 set(gcf,'Color','w') 75 75 printmodel(['ismipcpattynvx' num2str(L)],'png','margin','on','marginsize',25,'frame','off','resolution',1.5,'hardcopy','off'); 76 system(['mv ismipcpattynvx' num2str(L) '.png ' ISSM_DIR '/ ../website/doc_pdf/validation/Images/ISMIP/TestC ']);76 system(['mv ismipcpattynvx' num2str(L) '.png ' ISSM_DIR '/website/doc_pdf/validation/Images/ISMIP/TestC ']); 77 77 end 78 78 plotmodel(md,'data',vy,'layer#all',md.numlayers,'xlim',[0 L/10^3],'ylim',[0 L/10^3],'unit','km','figure',3) … … 80 80 set(gcf,'Color','w') 81 81 printmodel(['ismipcpattynvy' num2str(L)],'png','margin','on','marginsize',25,'frame','off','resolution',1.5,'hardcopy','off'); 82 system(['mv ismipcpattynvy' num2str(L) '.png ' ISSM_DIR '/ ../website/doc_pdf/validation/Images/ISMIP/TestC ']);82 system(['mv ismipcpattynvy' num2str(L) '.png ' ISSM_DIR '/website/doc_pdf/validation/Images/ISMIP/TestC ']); 83 83 end 84 84 plotmodel(md,'data',vz,'layer#all',md.numlayers,'xlim',[0 L/10^3],'ylim',[0 L/10^3],'unit','km','figure',4) … … 86 86 set(gcf,'Color','w') 87 87 printmodel(['ismipcpattynvz' num2str(L)],'png','margin','on','marginsize',25,'frame','off','resolution',1.5,'hardcopy','off'); 88 system(['mv ismipcpattynvz' num2str(L) '.png ' ISSM_DIR '/ ../website/doc_pdf/validation/Images/ISMIP/TestC ']);88 system(['mv ismipcpattynvz' num2str(L) '.png ' ISSM_DIR '/website/doc_pdf/validation/Images/ISMIP/TestC ']); 89 89 end 90 90 … … 111 111 set(gcf,'Color','w') 112 112 printmodel(['ismipcpattynvxsec' num2str(L)],'png','margin','on','marginsize',25,'frame','off','resolution',1.5,'hardcopy','off'); 113 system(['mv ismipcpattynvxsec' num2str(L) '.png ' ISSM_DIR '/ ../website/doc_pdf/validation/Images/ISMIP/TestC ']);113 system(['mv ismipcpattynvxsec' num2str(L) '.png ' ISSM_DIR '/website/doc_pdf/validation/Images/ISMIP/TestC ']); 114 114 end 115 115 end … … 120 120 set(gcf,'Color','w') 121 121 printmodel('ismipcpattynminvx','png','margin','on','marginsize',25,'frame','off','resolution',1.5,'hardcopy','off'); 122 system(['mv ismipcpattynminvx.png ' ISSM_DIR '/ ../website/doc_pdf/validation/Images/ISMIP/TestC ']);122 system(['mv ismipcpattynminvx.png ' ISSM_DIR '/website/doc_pdf/validation/Images/ISMIP/TestC ']); 123 123 end 124 124 plot([5 10 20 40 80 160],maxvx);ylim([0 200]); xlim([0 160]) … … 126 126 set(gcf,'Color','w') 127 127 printmodel('ismipcpattynmaxvx','png','margin','on','marginsize',25,'frame','off','resolution',1.5,'hardcopy','off'); 128 system(['mv ismipcpattynmaxvx.png ' ISSM_DIR '/ ../website/doc_pdf/validation/Images/ISMIP/TestC ']);128 system(['mv ismipcpattynmaxvx.png ' ISSM_DIR '/website/doc_pdf/validation/Images/ISMIP/TestC ']); 129 129 end 130 130 %Fields and tolerances to track changes -
issm/trunk/test/NightlyRun/test1107.m
r5606 r6088 70 70 set(gcf,'Color','w') 71 71 printmodel(['ismipdpattynvx' num2str(L)],'png','margin','on','marginsize',25,'frame','off','resolution',1.5,'hardcopy','off'); 72 system(['mv ismipdpattynvx' num2str(L) '.png ' ISSM_DIR '/ ../website/doc_pdf/validation/Images/ISMIP/TestD ']);72 system(['mv ismipdpattynvx' num2str(L) '.png ' ISSM_DIR '/website/doc_pdf/validation/Images/ISMIP/TestD ']); 73 73 end 74 74 plotmodel(md,'data',vz,'layer#all',md.numlayers,'xlim',[0 L/10^3],'ylim',[0 L/10^3],'unit','km','figure',3) … … 76 76 set(gcf,'Color','w') 77 77 printmodel(['ismipdpattynvz' num2str(L)],'png','margin','on','marginsize',25,'frame','off','resolution',1.5,'hardcopy','off'); 78 system(['mv ismipdpattynvz' num2str(L) '.png ' ISSM_DIR '/ ../website/doc_pdf/validation/Images/ISMIP/TestD ']);78 system(['mv ismipdpattynvz' num2str(L) '.png ' ISSM_DIR '/website/doc_pdf/validation/Images/ISMIP/TestD ']); 79 79 end 80 80 … … 101 101 set(gcf,'Color','w') 102 102 printmodel(['ismipdpattynvxsec' num2str(L)],'png','margin','on','marginsize',25,'frame','off','resolution',1.5,'hardcopy','off'); 103 system(['mv ismipdpattynvxsec' num2str(L) '.png ' ISSM_DIR '/ ../website/doc_pdf/validation/Images/ISMIP/TestD ']);103 system(['mv ismipdpattynvxsec' num2str(L) '.png ' ISSM_DIR '/website/doc_pdf/validation/Images/ISMIP/TestD ']); 104 104 end 105 105 end … … 110 110 set(gcf,'Color','w') 111 111 printmodel('ismipdpattynminvx','png','margin','on','marginsize',25,'frame','off','resolution',1.5,'hardcopy','off'); 112 system(['mv ismipdpattynminvx.png ' ISSM_DIR '/ ../website/doc_pdf/validation/Images/ISMIP/TestD ']);112 system(['mv ismipdpattynminvx.png ' ISSM_DIR '/website/doc_pdf/validation/Images/ISMIP/TestD ']); 113 113 end 114 114 plot([5 10 20 40 80 160],maxvx);ylim([0 300]);xlim([0 160]) … … 116 116 set(gcf,'Color','w') 117 117 printmodel('ismipdpattynmaxvx','png','margin','on','marginsize',25,'frame','off','resolution',1.5,'hardcopy','off'); 118 system(['mv ismipdpattynmaxvx.png ' ISSM_DIR '/ ../website/doc_pdf/validation/Images/ISMIP/TestD ']);118 system(['mv ismipdpattynmaxvx.png ' ISSM_DIR '/website/doc_pdf/validation/Images/ISMIP/TestD ']); 119 119 end 120 120 %Fields and tolerances to track changes -
issm/trunk/test/NightlyRun/test1109.m
r5606 r6088 53 53 set(gcf,'Color','w') 54 54 printmodel('ismipepattynvxfrozen','png','margin','on','marginsize',25,'frame','off','resolution',1.5,'hardcopy','off'); 55 system(['mv ismipepattynvxfrozen.png ' ISSM_DIR '/ ../website/doc_pdf/validation/Images/ISMIP/TestE ']);55 system(['mv ismipepattynvxfrozen.png ' ISSM_DIR '/website/doc_pdf/validation/Images/ISMIP/TestE ']); 56 56 elseif i==2, 57 57 plotmodel(md,'data',vy,'ylim',[-10 80],'layer',md.numlayers,'sectionvalue','../Exp/ISMIPE.exp','resolution',[10 10],'title','','xlabel','') 58 58 set(gcf,'Color','w') 59 59 printmodel('ismipestokesvxfrozen','png','margin','on','marginsize',25,'frame','off','resolution',1.5,'hardcopy','off'); 60 system(['mv ismipestokesvxfrozen.png ' ISSM_DIR '/ ../website/doc_pdf/validation/Images/ISMIP/TestE ']);60 system(['mv ismipestokesvxfrozen.png ' ISSM_DIR '/website/doc_pdf/validation/Images/ISMIP/TestE ']); 61 61 elseif i==3, 62 62 plotmodel(md,'data',vy,'ylim',[-50 200],'layer',md.numlayers,'sectionvalue','../Exp/ISMIPE.exp','resolution',[10 10],'title','','xlabel','') 63 63 set(gcf,'Color','w') 64 64 printmodel('ismipepattynvxsliding','png','margin','on','marginsize',25,'frame','off','resolution',1.5,'hardcopy','off'); 65 system(['mv ismipepattynvxsliding.png ' ISSM_DIR '/ ../website/doc_pdf/validation/Images/ISMIP/TestE ']);65 system(['mv ismipepattynvxsliding.png ' ISSM_DIR '/website/doc_pdf/validation/Images/ISMIP/TestE ']); 66 66 elseif i==4, 67 67 plotmodel(md,'data',vy,'ylim',[-50 200],'layer',md.numlayers,'sectionvalue','../Exp/ISMIPE.exp','resolution',[10 10],'title','','xlabel','') 68 68 set(gcf,'Color','w') 69 69 printmodel('ismipestokesvxsliding','png','margin','on','marginsize',25,'frame','off','resolution',1.5,'hardcopy','off'); 70 system(['mv ismipestokesvxsliding.png ' ISSM_DIR '/ ../website/doc_pdf/validation/Images/ISMIP/TestE ']);70 system(['mv ismipestokesvxsliding.png ' ISSM_DIR '/website/doc_pdf/validation/Images/ISMIP/TestE ']); 71 71 end 72 72 end -
issm/trunk/test/NightlyRun/test120.m
r5964 r6088 4 4 md=setelementstype(md,'macayeal','all'); 5 5 md=SetParallel(md,3); 6 md.verbose=0; 7 8 md.petscoptions=addoptions(md.petscoptions,DiagnosticHorizAnalysisEnum,asmoptions); 9 md.petscoptions=addoptions(md.petscoptions,PrognosticAnalysisEnum,mumpsoptions); 10 11 6 12 md=solve(md,'analysis_type',Transient2DSolutionEnum); 7 13 -
issm/trunk/test/NightlyRun/test1201.m
r5606 r6088 61 61 set(gcf,'Color','w') 62 62 printmodel('eismintmasscthickness','png','margin','on','marginsize',25,'frame','off','resolution',2,'hardcopy','off'); 63 system(['mv eismintmasscthickness.png ' ISSM_DIR '/ ../website/doc_pdf/validation/Images/EISMINT ']);63 system(['mv eismintmasscthickness.png ' ISSM_DIR '/website/doc_pdf/validation/Images/EISMINT ']); 64 64 end 65 65 -
issm/trunk/test/NightlyRun/test1202.m
r5606 r6088 28 28 set(gcf,'Color','w') 29 29 printmodel('eismintdiag1vy','png','margin','on','marginsize',25,'frame','off','resolution',2,'hardcopy','off'); 30 system(['mv eismintdiag1vy.png ' ISSM_DIR '/ ../website/doc_pdf/validation/Images/EISMINT ']);30 system(['mv eismintdiag1vy.png ' ISSM_DIR '/website/doc_pdf/validation/Images/EISMINT ']); 31 31 end 32 32 -
issm/trunk/test/NightlyRun/test1203.m
r5606 r6088 31 31 set(gcf,'Color','w') 32 32 printmodel('eismintdiag2vy','png','margin','on','marginsize',25,'frame','off','resolution',2,'hardcopy','off'); 33 system(['mv eismintdiag2vy.png ' ISSM_DIR '/ ../website/doc_pdf/validation/Images/EISMINT ']);33 system(['mv eismintdiag2vy.png ' ISSM_DIR '/website/doc_pdf/validation/Images/EISMINT ']); 34 34 end 35 35 -
issm/trunk/test/NightlyRun/test1205.m
r5765 r6088 82 82 set(gcf,'Color','w') 83 83 printmodel('hutterstatic','png','margin','on','marginsize',25,'frame','off','resolution',0.7,'hardcopy','off'); 84 system(['mv hutterstatic.png ' ISSM_DIR '/ ../website/doc_pdf/validation/Images/EISMINT/IceSheet']);84 system(['mv hutterstatic.png ' ISSM_DIR '/website/doc_pdf/validation/Images/EISMINT/IceSheet']); 85 85 end 86 86 -
issm/trunk/test/NightlyRun/test1206.m
r5765 r6088 81 81 set(gcf,'Color','w') 82 82 printmodel('pattynstatic','png','margin','on','marginsize',25,'frame','off','resolution',0.7,'hardcopy','off'); 83 system(['mv pattynstatic.png ' ISSM_DIR '/ ../website/doc_pdf/validation/Images/EISMINT/IceSheet']);83 system(['mv pattynstatic.png ' ISSM_DIR '/website/doc_pdf/validation/Images/EISMINT/IceSheet']); 84 84 end 85 85 -
issm/trunk/test/NightlyRun/test1207.m
r5765 r6088 81 81 set(gcf,'Color','w') 82 82 printmodel('stokesstatic','png','margin','on','marginsize',25,'frame','off','resolution',0.7,'hardcopy','off'); 83 system(['mv stokesstatic.png ' ISSM_DIR '/ ../website/doc_pdf/validation/Images/EISMINT/IceSheet']);83 system(['mv stokesstatic.png ' ISSM_DIR '/website/doc_pdf/validation/Images/EISMINT/IceSheet']); 84 84 end 85 85 -
issm/trunk/test/NightlyRun/test1301.m
r5606 r6088 38 38 set(gcf,'Color','w') 39 39 printmodel('thermalmelting','png','margin','on','marginsize',25,'frame','off','resolution',0.7,'hardcopy','off'); 40 system(['mv thermalmelting.png ' ISSM_DIR '/ ../website/doc_pdf/validation/Images/Thermal ']);40 system(['mv thermalmelting.png ' ISSM_DIR '/website/doc_pdf/validation/Images/Thermal ']); 41 41 end 42 42 -
issm/trunk/test/NightlyRun/test1302.m
r5606 r6088 40 40 set(gcf,'Color','w') 41 41 printmodel('thermaladvection','png','margin','on','marginsize',25,'frame','off','resolution',0.7,'hardcopy','off'); 42 system(['mv thermaladvection.png ' ISSM_DIR '/ ../website/doc_pdf/validation/Images/EISMINT ']);42 system(['mv thermaladvection.png ' ISSM_DIR '/website/doc_pdf/validation/Images/EISMINT ']); 43 43 end 44 44 -
issm/trunk/test/NightlyRun/test1303.m
r5606 r6088 35 35 set(gcf,'Color','w') 36 36 printmodel('thermalconduction','png','margin','on','marginsize',25,'frame','off','resolution',0.7,'hardcopy','off'); 37 system(['mv thermalconduction.png ' ISSM_DIR '/ ../website/doc_pdf/validation/Images/Thermal ']);37 system(['mv thermalconduction.png ' ISSM_DIR '/website/doc_pdf/validation/Images/Thermal ']); 38 38 end 39 39 -
issm/trunk/test/NightlyRun/test1304.m
r5606 r6088 36 36 set(gcf,'Color','w') 37 37 printmodel('thermalgeothermalflux','png','margin','on','marginsize',25,'frame','off','resolution',0.7,'hardcopy','off'); 38 system(['mv thermalgeothermalflux.png ' ISSM_DIR '/ ../website/doc_pdf/validation/Images/Thermal ']);38 system(['mv thermalgeothermalflux.png ' ISSM_DIR '/website/doc_pdf/validation/Images/Thermal ']); 39 39 end 40 40 -
issm/trunk/test/NightlyRun/test1401.m
r5496 r6088 16 16 set(gcf,'Color','w') 17 17 printmodel('mesh1_yams1','png','margin','on','marginsize',25,'frame','off','resolution',1,'hardcopy','off'); 18 system(['mv mesh1_yams1.png ' ISSM_DIR '/ ../website/doc_pdf/validation/Images/Mesh/ ']);18 system(['mv mesh1_yams1.png ' ISSM_DIR '/website/doc_pdf/validation/Images/Mesh/ ']); 19 19 end 20 20 … … 25 25 set(gcf,'Color','w') 26 26 printmodel('mesh1_yams2','png','margin','on','marginsize',25,'frame','off','resolution',1,'hardcopy','off'); 27 system(['mv mesh1_yams2.png ' ISSM_DIR '/ ../website/doc_pdf/validation/Images/Mesh/ ']);27 system(['mv mesh1_yams2.png ' ISSM_DIR '/website/doc_pdf/validation/Images/Mesh/ ']); 28 28 end 29 29 … … 34 34 set(gcf,'Color','w') 35 35 printmodel('mesh1_yams3','png','margin','on','marginsize',25,'frame','off','resolution',1,'hardcopy','off'); 36 system(['mv mesh1_yams3.png ' ISSM_DIR '/ ../website/doc_pdf/validation/Images/Mesh/ ']);36 system(['mv mesh1_yams3.png ' ISSM_DIR '/website/doc_pdf/validation/Images/Mesh/ ']); 37 37 end 38 38 x1=md.x; … … 46 46 set(gcf,'Color','w') 47 47 printmodel('mesh1_bamg1','png','margin','on','marginsize',25,'frame','off','resolution',1,'hardcopy','off'); 48 system(['mv mesh1_bamg1.png ' ISSM_DIR '/ ../website/doc_pdf/validation/Images/Mesh/ ']);48 system(['mv mesh1_bamg1.png ' ISSM_DIR '/website/doc_pdf/validation/Images/Mesh/ ']); 49 49 end 50 50 … … 56 56 set(gcf,'Color','w') 57 57 printmodel('mesh1_bamg2','png','margin','on','marginsize',25,'frame','off','resolution',1,'hardcopy','off'); 58 system(['mv mesh1_bamg2.png ' ISSM_DIR '/ ../website/doc_pdf/validation/Images/Mesh/ ']);58 system(['mv mesh1_bamg2.png ' ISSM_DIR '/website/doc_pdf/validation/Images/Mesh/ ']); 59 59 end 60 60 … … 66 66 set(gcf,'Color','w') 67 67 printmodel('mesh1_bamg3','png','margin','on','marginsize',25,'frame','off','resolution',1,'hardcopy','off'); 68 system(['mv mesh1_bamg3.png ' ISSM_DIR '/ ../website/doc_pdf/validation/Images/Mesh/ ']);68 system(['mv mesh1_bamg3.png ' ISSM_DIR '/website/doc_pdf/validation/Images/Mesh/ ']); 69 69 end 70 70 x2=md.x; -
issm/trunk/test/NightlyRun/test1402.m
r5496 r6088 18 18 set(gcf,'Color','w') 19 19 printmodel('mesh2_yams1','png','margin','on','marginsize',25,'frame','off','resolution',1,'hardcopy','off'); 20 system(['mv mesh2_yams1.png ' ISSM_DIR '/ ../website/doc_pdf/validation/Images/Mesh/ ']);20 system(['mv mesh2_yams1.png ' ISSM_DIR '/website/doc_pdf/validation/Images/Mesh/ ']); 21 21 end 22 22 … … 30 30 set(gcf,'Color','w') 31 31 printmodel('mesh2_yams2','png','margin','on','marginsize',25,'frame','off','resolution',1,'hardcopy','off'); 32 system(['mv mesh2_yams2.png ' ISSM_DIR '/ ../website/doc_pdf/validation/Images/Mesh/ ']);32 system(['mv mesh2_yams2.png ' ISSM_DIR '/website/doc_pdf/validation/Images/Mesh/ ']); 33 33 end 34 34 … … 42 42 set(gcf,'Color','w') 43 43 printmodel('mesh2_yams3','png','margin','on','marginsize',25,'frame','off','resolution',1,'hardcopy','off'); 44 system(['mv mesh2_yams3.png ' ISSM_DIR '/ ../website/doc_pdf/validation/Images/Mesh/ ']);44 system(['mv mesh2_yams3.png ' ISSM_DIR '/website/doc_pdf/validation/Images/Mesh/ ']); 45 45 end 46 46 x1=md.x; … … 57 57 set(gcf,'Color','w') 58 58 printmodel('mesh2_bamg1','png','margin','on','marginsize',25,'frame','off','resolution',1,'hardcopy','off'); 59 system(['mv mesh2_bamg1.png ' ISSM_DIR '/ ../website/doc_pdf/validation/Images/Mesh/ ']);59 system(['mv mesh2_bamg1.png ' ISSM_DIR '/website/doc_pdf/validation/Images/Mesh/ ']); 60 60 end 61 61 … … 70 70 set(gcf,'Color','w') 71 71 printmodel('mesh2_bamg2','png','margin','on','marginsize',25,'frame','off','resolution',1,'hardcopy','off'); 72 system(['mv mesh2_bamg2.png ' ISSM_DIR '/ ../website/doc_pdf/validation/Images/Mesh/ ']);72 system(['mv mesh2_bamg2.png ' ISSM_DIR '/website/doc_pdf/validation/Images/Mesh/ ']); 73 73 end 74 74 … … 83 83 set(gcf,'Color','w') 84 84 printmodel('mesh2_bamg3','png','margin','on','marginsize',25,'frame','off','resolution',1,'hardcopy','off'); 85 system(['mv mesh2_bamg3.png ' ISSM_DIR '/ ../website/doc_pdf/validation/Images/Mesh/ ']);85 system(['mv mesh2_bamg3.png ' ISSM_DIR '/website/doc_pdf/validation/Images/Mesh/ ']); 86 86 end 87 87 … … 96 96 set(gcf,'Color','w') 97 97 printmodel('mesh2_bamgiso','png','margin','on','marginsize',25,'frame','off','resolution',1,'hardcopy','off'); 98 system(['mv mesh2_bamgiso.png ' ISSM_DIR '/ ../website/doc_pdf/validation/Images/Mesh/ ']);98 system(['mv mesh2_bamgiso.png ' ISSM_DIR '/website/doc_pdf/validation/Images/Mesh/ ']); 99 99 end 100 100 x2=md.x; -
issm/trunk/test/NightlyRun/test218.m
r5964 r6088 5 5 md=setelementstype(md,'macayeal','all'); 6 6 md=SetParallel(md,3); 7 7 8 md=solve(md,'analysis_type',Transient3DSolutionEnum); 8 9
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