Changeset 25836 for issm/trunk/externalpackages/netcdf-python/install.sh

Timestamp:

12/08/20 08:45:53 (4 years ago)

Author:

Mathieu Morlighem

Message:

merged trunk-jpl and trunk for revision 25834

Location:

issm/trunk

Files:

• . (modified) (1 prop)
• externalpackages/netcdf-python/install.sh (modified) (1 diff)

issm/trunk/externalpackages/netcdf-python/install.sh

@@ -2 +2 @@
 set -eu
 
-#Some cleanup
-rm -rf install netCDF4-1.0
-mkdir install 
 
-#Download from ISSM server
-$ISSM_DIR/scripts/DownloadExternalPackage.sh "https://issm.ess.uci.edu/files/externalpackages/netCDF4-1.0.tar.gz" "netCDF4-1.0.tar.gz"
+# Constants
+#
+VER="1.5.3"
 
-#Untar 
-tar -zxvf  netCDF4-1.0.tar.gz
+# Environment
+#
+export HDF5_DIR="${ISSM_DIR}/externalpackages/petsc/install"
+export MPIINC_DIR="${ISSM_DIR}/externalpackages/petsc/install/include"
+export NETCDF_DIR="${ISSM_DIR}/externalpackages/netcdf/install"
+export PYTHONUSERBASE="${ISSM_DIR}/externalpackages/netcdf-python/install" # This variable and '--user' option supplied to 'setup.py install' are required to install to custom location (source: https://setuptools.readthedocs.io/en/latest/easy_install.html#custom-installation-locations)
 
-#for later: 
-rm -rf ISSMDIR
-echo $ISSM_DIR | sed 's/\//\\\//g' > ISSMDIR
-ISSMDIR=`cat ISSMDIR` && rm -rf ISSMDIR
+# Download source
+$ISSM_DIR/scripts/DownloadExternalPackage.sh "https://issm.ess.uci.edu/files/externalpackages/netcdf4-python-${VER}rel.tar.gz" "netcdf4-python-${VER}rel.tar.gz"
 
-#Move netCDF4 to install directory
-rm -rf install/*
-mv netCDF4-1.0/* install/
-rm -rf netCDF4-1.0
+# Unpack source
+tar -zxvf netcdf4-python-${VER}rel.tar.gz
 
-#Configur and compile
-cd install
-#edit setup.cfg to point to hdf5 and netcdf
-cat setup.cfg.template  | sed "s/\#netCDF4_dir = \/usr\/local/netCDF4_dir = $ISSMDIR\/externalpackages\/netcdf\/install/g"  | sed "s/\#HDF5_dir = \/usr\/local/HDF5_DIR = $ISSMDIR\/externalpackages\/hdf5\/install/g" > setup.cfg
+# Cleanup
+rm -rf install src
+mkdir install src
 
-python setup.py build 
-python setup.py install
+# Move source to 'src' directory
+mv netcdf4-python-${VER}rel/* src/
+rm -rf netcdf4-python-${VER}rel
+
+# Compile and install
+cd src
+python setup.py build
+python setup.py install --user
+
+# Unzip eggs
+for egg in $(find "${PYTHONUSERBASE}/lib" -name *.egg); do
+        parent_dir=$(dirname ${egg})
+        filename=$(basename -- ${egg})
+        extension="${filename##*.}"
+        filename="${filename%.*}"
+        src_dir="${parent_dir}/${filename}"
+        unzip ${egg} -d ${src_dir}
+done