Changeset 21729

Timestamp:

May 19, 2017, 2:48:02 PM (9 years ago)

Author:

Mathieu Morlighem

Message:

merged trunk-jpl and trunk for revision 21727

Location:

issm/trunk

Files:

• . (modified) (view diffs)
• configs/config-ios-armv7.sh (deleted)
• configs/config-ios-armv7s.sh (deleted)
• configs/config-ios-linux.sh (deleted)
• configs/config-ios-simulator.sh (deleted)
• configs/config-pleiades-petsc3.4.sh (deleted)
• configs/config-win10.sh (deleted)
• configs/configure.sh (deleted)
• configure.ac (modified) (view diffs)
• etc/environment.csh (modified) (view diffs)
• etc/environment.sh (modified) (view diffs)
• examples/Jakobshavn/runme.m (modified) (view diffs)
• examples/Pig/runme.m (modified) (view diffs)
• externalpackages/adjoinablempi/install-macosx64.sh (modified) (view diffs)
• externalpackages/adjoinablempi/install-pleaides-gcc.sh (modified) (view diffs)
• externalpackages/adjoinablempi/install-pleaides.sh (modified) (view diffs)
• externalpackages/adjoinablempi/install.sh (modified) (view diffs)
• externalpackages/adolc/install-withampi-macosx64.sh (modified) (view diffs)
• externalpackages/adolc/install-withampi-pleiades-gcc.sh (modified) (view diffs)
• externalpackages/adolc/install-withampi-pleiades.sh (modified) (view diffs)
• externalpackages/adolc/install-withampi.sh (modified) (view diffs)
• externalpackages/adolc/install.sh (modified) (view diffs)
• externalpackages/boost/configs/1.55/adl.hpp.lonestar.patch (deleted)
• externalpackages/boost/install-1.55-lonestar.sh (modified) (view diffs)
• externalpackages/boost/install-1.55-pleiades.sh (modified) (view diffs)
• externalpackages/boost/install-1.55-pleiades_dakota6.2.sh (deleted)
• externalpackages/chaco/chaco_njs_notes.txt (modified) (view diffs)
• externalpackages/chaco/install-macosx64-sierra.sh (copied) (copied from issm/trunk-jpl/externalpackages/chaco/install-macosx64-sierra.sh ) (view diffs)
• externalpackages/chaco/patches/Makefile.macosx64-sierra.patch (copied) (copied from issm/trunk-jpl/externalpackages/chaco/patches/Makefile.macosx64-sierra.patch ) (view diffs)
• externalpackages/dakota/configs/6.2/CMakeLists.txt.pfe.patch (modified) (view diffs)
• externalpackages/dakota/install-4.2-pleiades-petsc3.3.sh (deleted)
• externalpackages/dakota/install-4.2-pleiades.sh (deleted)
• externalpackages/dakota/install-5.2-pleiades-petsc3.3.sh (deleted)
• externalpackages/dakota/install-5.3.1-pleiades.sh (deleted)
• externalpackages/export_fig/eps2pdf.m (modified) (view diffs)
• externalpackages/export_fig/export_fig.m (modified) (view diffs)
• externalpackages/export_fig/pdftops.m (modified) (view diffs)
• externalpackages/export_fig/print2array.m (modified) (view diffs)
• externalpackages/export_fig/print2eps.m (modified) (view diffs)
• externalpackages/git/install-macosx64-sierra.sh (copied) (copied from issm/trunk-jpl/externalpackages/git/install-macosx64-sierra.sh ) (view diffs)
• externalpackages/modules/install-macosx64.sh (modified) (view diffs)
• externalpackages/mpich/install-3.2-linux64-static.sh (copied) (copied from issm/trunk-jpl/externalpackages/mpich/install-3.2-linux64-static.sh ) (view diffs)
• externalpackages/mpich/install-3.2-linux64.sh (copied) (copied from issm/trunk-jpl/externalpackages/mpich/install-3.2-linux64.sh ) (view diffs)
• externalpackages/mpich/install-3.2-macosx64-static.sh (copied) (copied from issm/trunk-jpl/externalpackages/mpich/install-3.2-macosx64-static.sh ) (view diffs)
• externalpackages/mpich/install-3.2-macosx64.sh (copied) (copied from issm/trunk-jpl/externalpackages/mpich/install-3.2-macosx64.sh ) (view diffs)
• externalpackages/neopz (copied) (copied from issm/trunk-jpl/externalpackages/neopz ) (view diffs)
• externalpackages/neopz/install.sh (copied) (copied from issm/trunk-jpl/externalpackages/neopz/install.sh ) (view diffs)
• externalpackages/pcatool (copied) (copied from issm/trunk-jpl/externalpackages/pcatool ) (view diffs)
• externalpackages/pcatool/install.sh (copied) (copied from issm/trunk-jpl/externalpackages/pcatool/install.sh ) (view diffs)
• externalpackages/pcatool/pcatool.tar.gz (copied) (copied from issm/trunk-jpl/externalpackages/pcatool/pcatool.tar.gz ) (view diffs)
• externalpackages/petsc/install-3.6-macosx64.sh (modified) (view diffs)
• externalpackages/petsc/install-3.6-pleiades.sh (modified) (view diffs)
• externalpackages/petsc/install-3.7-greenplanet.sh (modified) (view diffs)
• externalpackages/petsc/install-3.7-hpc.sh (modified) (view diffs)
• externalpackages/petsc/install-3.7-linux64-static.sh (copied) (copied from issm/trunk-jpl/externalpackages/petsc/install-3.7-linux64-static.sh ) (view diffs)
• externalpackages/petsc/install-3.7-linux64.sh (modified) (view diffs)
• externalpackages/petsc/install-3.7-macosx64-static.sh (copied) (copied from issm/trunk-jpl/externalpackages/petsc/install-3.7-macosx64-static.sh ) (view diffs)
• externalpackages/petsc/install-3.7-macosx64.sh (modified) (view diffs)
• externalpackages/petsc/install-3.7-pleiades.sh (modified) (view diffs)
• externalpackages/tclx/install.sh (modified) (view diffs)
• externalpackages/valgrind/issm.supp (modified) (view diffs)
• jenkins/linux64_caladan (modified) (view diffs)
• jenkins/linux64_caladan_ad (modified) (view diffs)
• jenkins/linux64_caladan_ampi (modified) (view diffs)
• jenkins/linux64_ross (modified) (view diffs)
• jenkins/linux64_ross_ad (modified) (view diffs)
• jenkins/linux64_ross_ampi (modified) (view diffs)
• jenkins/linux64_ross_dakota (modified) (view diffs)
• jenkins/linux64_ross_gia (modified) (view diffs)
• jenkins/linux64_ross_iceocean (modified) (view diffs)
• jenkins/linux64_ross_python (modified) (view diffs)
• jenkins/linux64_ross_se (modified) (view diffs)
• jenkins/linux64_ross_static (modified) (view diffs)
• jenkins/linux64_ross_test (modified) (view diffs)
• jenkins/macosx_pine-island (modified) (view diffs)
• jenkins/macosx_pine-island_dakota (modified) (view diffs)
• jenkins/macosx_pine-island_dakota_static (modified) (view diffs)
• jenkins/macosx_pine-island_examples (modified) (view diffs)
• jenkins/macosx_pine-island_static (modified) (view diffs)
• jenkins/windows (modified) (view diffs)
• m4/analyses.m4 (modified) (view diffs)
• m4/issm_options.m4 (modified) (view diffs)
• scripts/BinRead.py (modified) (view diffs)
• src (modified) (view diffs)
• src/c/Makefile.am (modified) (view diffs)
• src/c/analyses/EnthalpyAnalysis.cpp (modified) (view diffs)
• src/c/analyses/EnthalpyAnalysis.h (modified) (view diffs)
• src/c/analyses/EnumToAnalysis.cpp (modified) (view diffs)
• src/c/analyses/ExtrapolationAnalysis.cpp (modified) (view diffs)
• src/c/analyses/GiaAnalysis.cpp (deleted)
• src/c/analyses/GiaAnalysis.h (deleted)
• src/c/analyses/GiaIvinsAnalysis.cpp (copied) (copied from issm/trunk-jpl/src/c/analyses/GiaIvinsAnalysis.cpp ) (view diffs)
• src/c/analyses/GiaIvinsAnalysis.h (copied) (copied from issm/trunk-jpl/src/c/analyses/GiaIvinsAnalysis.h ) (view diffs)
• src/c/analyses/HydrologyDCEfficientAnalysis.cpp (modified) (view diffs)
• src/c/analyses/HydrologyDCEfficientAnalysis.h (modified) (view diffs)
• src/c/analyses/HydrologyDCInefficientAnalysis.cpp (modified) (view diffs)
• src/c/analyses/HydrologyDCInefficientAnalysis.h (modified) (view diffs)
• src/c/analyses/HydrologySommersAnalysis.cpp (modified) (view diffs)
• src/c/analyses/LevelsetAnalysis.cpp (modified) (view diffs)
• src/c/analyses/MasstransportAnalysis.cpp (modified) (view diffs)
• src/c/analyses/SealevelriseAnalysis.cpp (modified) (view diffs)
• src/c/analyses/SmbAnalysis.cpp (modified) (view diffs)
• src/c/analyses/StressbalanceAnalysis.cpp (modified) (view diffs)
• src/c/analyses/StressbalanceSIAAnalysis.cpp (modified) (view diffs)
• src/c/analyses/ThermalAnalysis.cpp (modified) (view diffs)
• src/c/analyses/analyses.h (modified) (view diffs)
• src/c/bamg/BamgMesh.cpp (modified) (view diffs)
• src/c/bamg/BamgMesh.h (modified) (view diffs)
• src/c/bamg/BamgQuadtree.cpp (modified) (view diffs)
• src/c/bamg/BamgQuadtree.h (modified) (view diffs)
• src/c/bamg/BamgVertex.cpp (modified) (view diffs)
• src/c/bamg/BamgVertex.h (modified) (view diffs)
• src/c/bamg/Direction.cpp (deleted)
• src/c/bamg/Direction.h (deleted)
• src/c/bamg/DoubleAndInt.h (deleted)
• src/c/bamg/EigenMetric.cpp (modified) (view diffs)
• src/c/bamg/Geometry.cpp (modified) (view diffs)
• src/c/bamg/Geometry.h (modified) (view diffs)
• src/c/bamg/Mesh.cpp (modified) (view diffs)
• src/c/bamg/Mesh.h (modified) (view diffs)
• src/c/bamg/Metric.cpp (modified) (view diffs)
• src/c/bamg/Metric.h (modified) (view diffs)
• src/c/bamg/Triangle.cpp (modified) (view diffs)
• src/c/bamg/Triangle.h (modified) (view diffs)
• src/c/bamg/bamgobjects.h (modified) (view diffs)
• src/c/bamg/macros.h (modified) (view diffs)
• src/c/classes/AdaptiveMeshRefinement.cpp (copied) (copied from issm/trunk-jpl/src/c/classes/AdaptiveMeshRefinement.cpp ) (view diffs)
• src/c/classes/AdaptiveMeshRefinement.h (copied) (copied from issm/trunk-jpl/src/c/classes/AdaptiveMeshRefinement.h ) (view diffs)
• src/c/classes/DofIndexing.cpp (modified) (view diffs)
• src/c/classes/Elements/Element.cpp (modified) (view diffs)
• src/c/classes/Elements/Element.h (modified) (view diffs)
• src/c/classes/Elements/ElementHook.cpp (modified) (view diffs)
• src/c/classes/Elements/ElementHook.h (modified) (view diffs)
• src/c/classes/Elements/Penta.cpp (modified) (view diffs)
• src/c/classes/Elements/Penta.h (modified) (view diffs)
• src/c/classes/Elements/PentaRef.cpp (modified) (view diffs)
• src/c/classes/Elements/PentaRef.h (modified) (view diffs)
• src/c/classes/Elements/Seg.h (modified) (view diffs)
• src/c/classes/Elements/Tetra.h (modified) (view diffs)
• src/c/classes/Elements/Tria.cpp (modified) (view diffs)
• src/c/classes/Elements/Tria.h (modified) (view diffs)
• src/c/classes/ExternalResults/GenericExternalResult.h (modified) (view diffs)
• src/c/classes/FemModel.cpp (modified) (view diffs)
• src/c/classes/FemModel.h (modified) (view diffs)
• src/c/classes/GiaDeflectionCoreArgs.h (copied) (copied from issm/trunk-jpl/src/c/classes/GiaDeflectionCoreArgs.h ) (view diffs)
• src/c/classes/Inputs/BoolInput.cpp (modified) (view diffs)
• src/c/classes/Inputs/BoolInput.h (modified) (view diffs)
• src/c/classes/Inputs/ControlInput.cpp (modified) (view diffs)
• src/c/classes/Inputs/IntInput.cpp (modified) (view diffs)
• src/c/classes/Inputs/IntInput.h (modified) (view diffs)
• src/c/classes/Inputs/PentaInput.cpp (modified) (view diffs)
• src/c/classes/IoModel.cpp (modified) (view diffs)
• src/c/classes/Loads/Friction.cpp (modified) (view diffs)
• src/c/classes/Loads/Friction.h (modified) (view diffs)
• src/c/classes/Materials/Material.h (modified) (view diffs)
• src/c/classes/Materials/Matestar.cpp (modified) (view diffs)
• src/c/classes/Materials/Matestar.h (modified) (view diffs)
• src/c/classes/Materials/Matice.cpp (modified) (view diffs)
• src/c/classes/Materials/Matice.h (modified) (view diffs)
• src/c/classes/Materials/Matpar.cpp (modified) (view diffs)
• src/c/classes/Materials/Matpar.h (modified) (view diffs)
• src/c/classes/Node.cpp (modified) (view diffs)
• src/c/classes/Node.h (modified) (view diffs)
• src/c/classes/Params/Param.h (modified) (view diffs)
• src/c/classes/Params/Parameters.cpp (modified) (view diffs)
• src/c/cores/CorePointerFromSolutionEnum.cpp (modified) (view diffs)
• src/c/cores/controlm1qn3_core.cpp (modified) (view diffs)
• src/c/cores/depthaverage_core.cpp (modified) (view diffs)
• src/c/cores/gia_core.cpp (copied) (copied from issm/trunk-jpl/src/c/cores/gia_core.cpp ) (view diffs)
• src/c/cores/hydrology_core.cpp (modified) (view diffs)
• src/c/cores/levelsetfunctionslope_core.cpp (modified) (view diffs)
• src/c/cores/sealevelrise_core_noneustatic.cpp (modified) (view diffs)
• src/c/cores/transient_core.cpp (modified) (view diffs)
• src/c/datastructures/DataSet.cpp (modified) (view diffs)
• src/c/main/issm_ocean.cpp (copied) (copied from issm/trunk-jpl/src/c/main/issm_ocean.cpp ) (view diffs)
• src/c/modules/Bamgx/Bamgx.cpp (modified) (view diffs)
• src/c/modules/GetVectorFromInputsx/GetVectorFromInputsx.cpp (modified) (view diffs)
• src/c/modules/GiaDeflectionCorex (copied) (copied from issm/trunk-jpl/src/c/modules/GiaDeflectionCorex ) (view diffs)
• src/c/modules/GiaDeflectionCorex/GiaDeflectionCorex.cpp (copied) (copied from issm/trunk-jpl/src/c/modules/GiaDeflectionCorex/GiaDeflectionCorex.cpp ) (view diffs)
• src/c/modules/GiaDeflectionCorex/GiaDeflectionCorex.h (copied) (copied from issm/trunk-jpl/src/c/modules/GiaDeflectionCorex/GiaDeflectionCorex.h ) (view diffs)
• src/c/modules/GiaDeflectionCorex/distme.f (copied) (copied from issm/trunk-jpl/src/c/modules/GiaDeflectionCorex/distme.f ) (view diffs)
• src/c/modules/GiaDeflectionCorex/freed.f (copied) (copied from issm/trunk-jpl/src/c/modules/GiaDeflectionCorex/freed.f ) (view diffs)
• src/c/modules/GiaDeflectionCorex/ojrule.f (copied) (copied from issm/trunk-jpl/src/c/modules/GiaDeflectionCorex/ojrule.f ) (view diffs)
• src/c/modules/GiaDeflectionCorex/pwise.f (copied) (copied from issm/trunk-jpl/src/c/modules/GiaDeflectionCorex/pwise.f ) (view diffs)
• src/c/modules/GiaDeflectionCorex/qwise.f (copied) (copied from issm/trunk-jpl/src/c/modules/GiaDeflectionCorex/qwise.f ) (view diffs)
• src/c/modules/GiaDeflectionCorex/stot.f (copied) (copied from issm/trunk-jpl/src/c/modules/GiaDeflectionCorex/stot.f ) (view diffs)
• src/c/modules/GiaDeflectionCorex/what0.f (copied) (copied from issm/trunk-jpl/src/c/modules/GiaDeflectionCorex/what0.f ) (view diffs)
• src/c/modules/InterpFromMeshToMesh2dx/InterpFromMeshToMesh2dx.cpp (modified) (view diffs)
• src/c/modules/IoModelToConstraintsx/IoModelToConstraintsx.cpp (modified) (view diffs)
• src/c/modules/ModelProcessorx/CreateElementsVerticesAndMaterials.cpp (modified) (view diffs)
• src/c/modules/ModelProcessorx/CreateOutputDefinitions.cpp (modified) (view diffs)
• src/c/modules/ModelProcessorx/CreateParameters.cpp (modified) (view diffs)
• src/c/modules/SurfaceMassBalancex/SurfaceMassBalancex.cpp (modified) (view diffs)
• src/c/modules/SurfaceMassBalancex/SurfaceMassBalancex.h (modified) (view diffs)
• src/c/shared/Elements/BuddJacka.cpp (modified) (view diffs)
• src/c/shared/Elements/ComputeD18OTemperaturePrecipitationFromPD.cpp (modified) (view diffs)
• src/c/shared/Elements/EstarComponents.cpp (modified) (view diffs)
• src/c/shared/Elements/elements.h (modified) (view diffs)
• src/c/shared/Enum/EnumDefinitions.h (modified) (view diffs)
• src/c/shared/Enum/EnumToStringx.cpp (modified) (view diffs)
• src/c/shared/Enum/StringToEnumx.cpp (modified) (view diffs)
• src/c/shared/MemOps/MemOps.cpp (modified) (view diffs)
• src/c/shared/MemOps/MemOps.h (modified) (view diffs)
• src/c/shared/io/Marshalling/IoCodeConversions.cpp (modified) (view diffs)
• src/c/solutionsequences/solutionsequence_hydro_nonlinear.cpp (modified) (view diffs)
• src/c/solutionsequences/solutionsequence_linear.cpp (modified) (view diffs)
• src/c/solutionsequences/solutionsequence_nonlinear.cpp (modified) (view diffs)
• src/c/toolkits/gsl/DenseGslSolve.cpp (modified) (view diffs)
• src/c/toolkits/issm/IssmMpiSparseMat.h (modified) (view diffs)
• src/c/toolkits/issm/IssmMpiVec.h (modified) (view diffs)
• src/c/toolkits/mumps/MumpsSolve.cpp (modified) (view diffs)
• src/m/Makefile.am (modified) (view diffs)
• src/m/boundaryconditions/love_numbers.py (modified) (view diffs)
• src/m/classes/SMBd18opdd.m (modified) (view diffs)
• src/m/classes/SMBd18opdd.py (modified) (view diffs)
• src/m/classes/SMBforcing.m (modified) (view diffs)
• src/m/classes/SMBforcing.py (modified) (view diffs)
• src/m/classes/SMBgradientsela.m (copied) (copied from issm/trunk-jpl/src/m/classes/SMBgradientsela.m ) (view diffs)
• src/m/classes/SMBgradientsela.py (copied) (copied from issm/trunk-jpl/src/m/classes/SMBgradientsela.py ) (view diffs)
• src/m/classes/amr.js (copied) (copied from issm/trunk-jpl/src/m/classes/amr.js ) (view diffs)
• src/m/classes/amr.m (copied) (copied from issm/trunk-jpl/src/m/classes/amr.m ) (view diffs)
• src/m/classes/amr.py (copied) (copied from issm/trunk-jpl/src/m/classes/amr.py ) (view diffs)
• src/m/classes/bamgmesh.m (modified) (view diffs)
• src/m/classes/bamgmesh.py (modified) (view diffs)
• src/m/classes/calvingdev.m (modified) (view diffs)
• src/m/classes/calvinglevermann.m (modified) (view diffs)
• src/m/classes/calvingminthickness.m (modified) (view diffs)
• src/m/classes/clusters/acenet.m (modified) (view diffs)
• src/m/classes/clusters/camhpc.m (modified) (view diffs)
• src/m/classes/clusters/castor.m (modified) (view diffs)
• src/m/classes/clusters/cloud.m (modified) (view diffs)
• src/m/classes/clusters/cosmos.m (modified) (view diffs)
• src/m/classes/clusters/cyclone.py (modified) (view diffs)
• src/m/classes/clusters/discover.m (modified) (view diffs)
• src/m/classes/clusters/gemini.m (modified) (view diffs)
• src/m/classes/clusters/generic.js (modified) (view diffs)
• src/m/classes/clusters/generic.m (modified) (view diffs)
• src/m/classes/clusters/generic.py (modified) (view diffs)
• src/m/classes/clusters/generic_static.m (modified) (view diffs)
• src/m/classes/clusters/greenplanet.m (modified) (view diffs)
• src/m/classes/clusters/hexagon.py (modified) (view diffs)
• src/m/classes/clusters/hpc.m (modified) (view diffs)
• src/m/classes/clusters/lonestar.m (modified) (view diffs)
• src/m/classes/clusters/pfe.m (modified) (view diffs)
• src/m/classes/clusters/pfe.py (modified) (view diffs)
• src/m/classes/clusters/pollux.m (modified) (view diffs)
• src/m/classes/clusters/raijin.m (modified) (view diffs)
• src/m/classes/clusters/vilje.m (modified) (view diffs)
• src/m/classes/clusters/vilje.py (modified) (view diffs)
• src/m/classes/clusters/yellowstone.m (copied) (copied from issm/trunk-jpl/src/m/classes/clusters/yellowstone.m ) (view diffs)
• src/m/classes/esa.m (modified) (view diffs)
• src/m/classes/esa.py (modified) (view diffs)
• src/m/classes/frictioncoulomb.py (modified) (view diffs)
• src/m/classes/frictionjosh.m (copied) (copied from issm/trunk-jpl/src/m/classes/frictionjosh.m ) (view diffs)
• src/m/classes/gia.js (deleted)
• src/m/classes/gia.m (deleted)
• src/m/classes/gia.py (deleted)
• src/m/classes/giacaron.m (copied) (copied from issm/trunk-jpl/src/m/classes/giacaron.m ) (view diffs)
• src/m/classes/giaivins.js (copied) (copied from issm/trunk-jpl/src/m/classes/giaivins.js ) (view diffs)
• src/m/classes/giaivins.m (copied) (copied from issm/trunk-jpl/src/m/classes/giaivins.m ) (view diffs)
• src/m/classes/giaivins.py (copied) (copied from issm/trunk-jpl/src/m/classes/giaivins.py ) (view diffs)
• src/m/classes/hydrologysommers.m (modified) (view diffs)
• src/m/classes/initialization.m (modified) (view diffs)
• src/m/classes/initialization.py (modified) (view diffs)
• src/m/classes/levelset.m (modified) (view diffs)
• src/m/classes/levelset.py (modified) (view diffs)
• src/m/classes/linearbasalforcings.m (modified) (view diffs)
• src/m/classes/linearbasalforcings.py (modified) (view diffs)
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• src/m/classes/matenhancedice.m (copied) (copied from issm/trunk-jpl/src/m/classes/matenhancedice.m ) (view diffs)
• src/m/classes/materials.m (copied) (copied from issm/trunk-jpl/src/m/classes/materials.m ) (view diffs)
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• src/m/classes/matice.js (modified) (view diffs)
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• src/m/classes/model.py (modified) (view diffs)
• src/m/classes/nodalvalue.m (modified) (view diffs)
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• test/Par/79North.py (modified) (view diffs)
• test/Par/GiaBenchmarksAB.par (deleted)
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• test/Par/ValleyGlacierShelf.py (modified) (view diffs)