Changeset 1268 for issm/trunk/src/m/classes/public/BuildQueueingScriptgemini.m

Timestamp:

07/08/09 20:06:39 (16 years ago)

Author:

Eric.Larour

Message:

Better handling of queuing on gemini altix clusters using PBS

File:

• issm/trunk/src/m/classes/public/BuildQueueingScriptgemini.m (modified) (2 diffs)

issm/trunk/src/m/classes/public/BuildQueueingScriptgemini.m

@@ -12 +12 @@
 end
 
-fprintf(fid,'#!/bin/csh\n');
-fprintf(fid,'#PBS -l walltime=%i\n',md.time);
+fprintf(fid,'#!/bin/sh\n');
+fprintf(fid,'#PBS -l walltime=%i\n',md.time*60); %walltime is in seconds.
 fprintf(fid,'#PBS -l ncpus=%i\n',md.np);
 if ~isempty(md.queue),
@@ -21 +21 @@
 fprintf(fid,'#PBS -e %s.errlog \n',md.name);
 
-fprintf(fid,'setenv PBS_O_WORKDIR %s\n',executionpath);
+fprintf(fid,'export PBS_O_WORKDIR=%s\n',executionpath);
 fprintf(fid,'cd $PBS_O_WORKDIR\n');
-fprintf(fid,'setenv OMP_NUM_THREADS 1\n');
+fprintf(fid,'export OMP_NUM_THREADS=1\n');
 fprintf(fid,'mpirun -np %i %s/%s.exe %s %s.bin %s.outbin %s.lock',md.np,codepath,md.analysis_type,executionpath,md.name,md.name,md.name);