Changeset 12609

Timestamp:

07/03/12 16:25:54 (13 years ago)

Author:

habbalf

Message:

PETSc dev install for Pleiades. Follow steps 1-3. Steps maybe a bit redundant but it works so far

File:

• issm/trunk-jpl/externalpackages/petsc/install-dev-pleiades.sh (modified) (8 diffs)

issm/trunk-jpl/externalpackages/petsc/install-dev-pleiades.sh

@@ -1 +1 @@
 #!/bin/bash
 #Step 0: download
-#Step 1: unzip and install
+#Step 1: install before plapack crasehs
 #Step 2: After Plapack implodes
 STEP=0
@@ -26 +26 @@
 #   -then rename metis in externalpackages to metis2
 if [ $STEP -eq 1 ]; then
-        #Some cleanup
-        rm -rf install petsc-3.2-p3 src
-        mkdir install src
 
-        #Download from ISSM server
-        $ISSM_DIR/scripts/DownloadExternalPackage.py 'http://issm.jpl.nasa.gov/files/externalpackages/petsc-3.2-p3.tar.gz' 'petsc-3.2-p3.tar.gz'
-
-        #Untar and move petsc to install directory
-        tar -zxvf  petsc-3.2-p3.tar.gz
-        mv petsc-3.2-p3/* src/
-        rm -rf petsc-3.2-p3
+        mkdir install
 
         #configure
@@ -49 +40 @@
                 --with-blas-lapack-dir=/nasa/intel/mkl/10.0.011/ \
                 --known-mpi-shared-libraries=1 \
-                --with-mpi-lib=/nasa/sgi/mpt/1.25/lib/libmpi.so \
-                --with-mpi-include=/nasa/sgi/mpt/1.25/include  \
+                --with-mpi-lib=/nasa/sgi/mpt/2.04/lib/libmpi.so \
+                --with-mpi-include=/nasa/sgi/mpt/2.04/include  \
                 --download-mumps=yes \
                 --download-plapack=yes \
@@ -59 +50 @@
                 --download-parmetis=yes \
                 --download-metis=yes \
+                --download-trilinos=yes \
+                --download-euclid=yes \
+                --download-pastix=yes \
+                --download-ptscotch=yes \
+                --download-spooles=yes \
                 --download-spai=yes \
+                --download-superlu=http://crd.lbl.gov/~xiaoye/SuperLU/superlu_4.3.tar.gz \
                 --FFLAGS=-I/usr/include \
                 --with-cc=icc \
@@ -80 +77 @@
          --with-shared-libraries=0 \
          --with-blas-lapack-dir=/nasa/intel/mkl/10.0.011/ \
-         --with-mpi-lib=/nasa/sgi/mpt/1.25/lib/libmpi.so \
-         --with-mpi-include=/nasa/sgi/mpt/1.25/include  \
+         --with-mpi-lib=/nasa/sgi/mpt/2.04/lib/libmpi.so \
+         --with-mpi-include=/nasa/sgi/mpt/2.04/include  \
          --known-mpi-shared-libraries=1 \
          --download-mumps=yes \
@@ -87 +84 @@
          --download-blacs=yes  \
          --download-blas=yes \
-         --download-f-blas-lapack=yes \
+         --with-f-blas-lapack-dir=$ISSM_DIR/externalpackages/petsc/src/$ISSM_ARCH \
          --download-parmetis=yes \
          --download-metis=yes \
-         --download-spai=yes \
+         --with-cxx=icpc \
+         --download-hypre=yes \
+         --download-trilinos=yes \
+         --download-prometheus=yes \
+         --download-euclid=yes \
+         --download-pastix=yes \
+         --download-ptscotch=yes \
+         --download-spooles=yes \
+         --download-superlu=http://crd.lbl.gov/~xiaoye/SuperLU/superlu_4.3.tar.gz \
+         --with-spai-dir=$ISSM_DIR/externalpackages/petsc/src/$ISSM_ARCH \
          --with-plapack-dir=$ISSM_DIR/externalpackages/petsc/src/$ISSM_ARCH \
-         --download-parmetis=yes \
          --FFLAGS=-I/usr/include \
          --with-cc=icc \
@@ -100 +105 @@
          --CXXOPTFLAGS=" -O3 -xS" \
          --with-pic=1
-         cat > src/script.queue << EOF
+         cat > script.queue << EOF
 #PBS -S /bin/bash
 #PBS -q debug 
@@ -109 +114 @@
 . /usr/share/modules/init/bash 
 module load comp-intel/11.1.046 
-module load mpi/mpt.1.25 
+module load mpi-sgi/mpt.2.04  #DEFINES MPI_Type_create_indexed_block
 module load math/intel_mkl_64_10.0.011 
 export PATH="$PATH:."