source: issm/trunk-jpl/externalpackages/petsc/install-dev-pleiades.sh@ 12567

#!/bin/bash
#Step 0: download
#Step 1: unzip and install
#Step 2: After Plapack implodes
STEP=0

if [ $STEP -eq 0 ]; then
        # Adapted from petsc 3.2. 
        # Used Mercurial to get code
        rm -rf src
        hg clone http://petsc.cs.iit.edu/petsc/petsc-dev src
        cd src
        hg clone http://petsc.cs.iit.edu/petsc/BuildSystem config/BuildSystem
fi

# To update (via Mercurial):
#      cd petsc-dev
#      hg pull -u
#      cd config/BuildSystem
#      hg pull -u


# configure script
# Note: using metis from externalpackages did not work...
# for now downloading new metis
#   -then rename metis in externalpackages to metis2
if [ $STEP -eq 1 ]; then
        #Some cleanup
        rm -rf install petsc-3.2-p3 src
        mkdir install src

        #Download from ISSM server
        $ISSM_DIR/scripts/DownloadExternalPackage.py 'http://issm.jpl.nasa.gov/files/externalpackages/petsc-3.2-p3.tar.gz' 'petsc-3.2-p3.tar.gz'

        #Untar and move petsc to install directory
        tar -zxvf  petsc-3.2-p3.tar.gz
        mv petsc-3.2-p3/* src/
        rm -rf petsc-3.2-p3

        #configure
        cd src
        ./config/configure.py \
                --prefix="$ISSM_DIR/externalpackages/petsc/install" \
                --with-batch=1  \
                --PETSC_ARCH="$ISSM_ARCH" \
                --PETSC_DIR="$ISSM_DIR/externalpackages/petsc/src" \
                --with-debugging=0 \
                --with-shared-libraries=0 \
                --with-blas-lapack-dir=/nasa/intel/mkl/10.0.011/ \
                --known-mpi-shared-libraries=1 \
                --with-mpi-lib=/nasa/sgi/mpt/1.25/lib/libmpi.so \
                --with-mpi-include=/nasa/sgi/mpt/1.25/include  \
                --download-mumps=yes \
                --download-plapack=yes \
                --download-scalapack=yes \
                --download-blacs=yes  \
                --download-blas=yes \
                --download-f-blas-lapack=yes \
                --download-parmetis=yes \
                --download-metis=yes \
                --download-spai=yes \
                --FFLAGS=-I/usr/include \
                --with-cc=icc \
                --with-fc=ifort \
                --COPTFLAGS=" -O3 -xS" \
                --FOPTFLAGS=" -O3 -xS" \
                --CXXOPTFLAGS=" -O3 -xS" \
                --with-pic=1
        echo "== Fix Plapack compilation manually (http://issm.jpl.nasa.gov/documentation/faq/petsc32/) =="
        echo "== Then run STEP=2 =="
fi
if [ $STEP -eq 2 ]; then
        cd src
        ./config/configure.py \
         --prefix="$ISSM_DIR/externalpackages/petsc/install" \
         --with-batch=1  \
         --PETSC_ARCH="$ISSM_ARCH" \
         --PETSC_DIR="$ISSM_DIR/externalpackages/petsc/src" \
         --with-debugging=0 \
         --with-shared-libraries=0 \
         --with-blas-lapack-dir=/nasa/intel/mkl/10.0.011/ \
         --with-mpi-lib=/nasa/sgi/mpt/1.25/lib/libmpi.so \
         --with-mpi-include=/nasa/sgi/mpt/1.25/include  \
         --known-mpi-shared-libraries=1 \
         --download-mumps=yes \
         --download-scalapack=yes \
         --download-blacs=yes  \
         --download-blas=yes \
         --download-f-blas-lapack=yes \
         --download-parmetis=yes \
         --download-metis=yes \
         --download-spai=yes \
         --with-plapack-dir=$ISSM_DIR/externalpackages/petsc/src/$ISSM_ARCH \
         --download-parmetis=yes \
         --FFLAGS=-I/usr/include \
         --with-cc=icc \
         --with-fc=ifort \
         --COPTFLAGS=" -O3 -xS" \
         --FOPTFLAGS=" -O3 -xS" \
         --CXXOPTFLAGS=" -O3 -xS" \
         --with-pic=1
         cat > src/script.queue << EOF
#PBS -S /bin/bash
#PBS -q debug 
#PBS -l select=1:ncpus=1:model=har 
#PBS -l walltime=200 
#PBS -W group_list=s1010 
#PBS -m e 
. /usr/share/modules/init/bash 
module load comp-intel/11.1.046 
module load mpi/mpt.1.25 
module load math/intel_mkl_64_10.0.011 
export PATH="$PATH:." 
export MPI_GROUP_MAX=64 
mpiexec -np 1 ./conftest-linux-gnu-ia64-intel.py
EOF
        echo "== Follow PETSc's instructions"
fi