[11101] | 1 | #!/bin/bash
|
---|
| 2 |
|
---|
| 3 | #Get number of cpus
|
---|
| 4 | NUMCPUS=$1;
|
---|
| 5 |
|
---|
| 6 | #Some cleanup
|
---|
| 7 | rm -rf Dakota
|
---|
| 8 | rm -rf src
|
---|
| 9 | rm -rf install
|
---|
| 10 | mkdir src install
|
---|
| 11 |
|
---|
| 12 | #Untar
|
---|
| 13 | tar -zxvf Dakota_4_3.src.tar.gz
|
---|
| 14 |
|
---|
| 15 | #Move Dakota to src directory
|
---|
| 16 | mv Dakota/* src
|
---|
| 17 | rm -rf Dakota
|
---|
| 18 |
|
---|
| 19 | #Apply patches
|
---|
| 20 | patch src/src/ParallelLibrary.C ./ParallelLibrary.C.patch
|
---|
| 21 | patch src/src/ParallelLibrary.H ./ParallelLibrary.H.patch
|
---|
| 22 | patch src/src/NIDRProblemDescDB.C ./NIDRProblemDescDB.C.patch
|
---|
| 23 | patch src/src/NonDSampling.C ./NonDSampling.C.patch
|
---|
| 24 | patch src/src/NonDLocalReliability.C ./NonDLocalReliability.C.patch
|
---|
| 25 | patch src/src/NonDUnilevelRBDO.C ./NonDUnilevelRBDO.C.patch # source not even used?
|
---|
| 26 | #patch -R src/packages/Pecos/src/LHSDriver.cpp ./LHSDriver.cpp.patch
|
---|
| 27 |
|
---|
| 28 | #Configure dakota
|
---|
| 29 | cd src
|
---|
[11995] | 30 | ./configure \
|
---|
| 31 | --prefix="$ISSM_TIER/externalpackages/dakota/install" \
|
---|
| 32 | --without-graphics \
|
---|
| 33 | --with-pic \
|
---|
| 34 | --disable-mpi \
|
---|
| 35 | --with-blas="-L$ISSM_TIER/externalpackages/petsc/install/lib -lfblas " \
|
---|
| 36 | --with-lapack="-L$ISSM_TIER/externalpackages/petsc/install/lib -lflapack -lPLAPACK "
|
---|
[11101] | 37 | cd ..
|
---|
| 38 |
|
---|
| 39 | #Before compiling, if running on 64 bits, we need to active fPIC compilation. Some packages
|
---|
| 40 | #do not register -fPIC in Dakota, which is a problem. Edit the faulty Makefiles and add the -fPIC
|
---|
| 41 | #flag to the compilation.
|
---|
| 42 | cat ./src/methods/NCSUOpt/Makefile | sed 's/FFLAGS = -g -O2/FFLAGS = -g -O2 -fPIC/g' > temp
|
---|
| 43 | mv temp ./src/methods/NCSUOpt/Makefile
|
---|
| 44 |
|
---|
| 45 | cat ./src/methods/acro/packages/pebbl/src/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CXXFLAGS = -O2 -fpermissive -fPIC/g' > temp
|
---|
| 46 | mv temp ./src/methods/acro/packages/pebbl/src/Makefile
|
---|
| 47 |
|
---|
[11995] | 48 | cat ./src/methods/hopspack/src-nappspack/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp
|
---|
[11101] | 49 | mv temp ./src/methods/hopspack/src-nappspack/Makefile
|
---|
| 50 |
|
---|
| 51 | cat ./src/methods/hopspack/src-cddlib/Makefile | sed 's/CFLAGS = -g -O2/CFLAGS = -g -O2 -fPIC/g' > temp
|
---|
| 52 | mv temp ./src/methods/hopspack/src-cddlib/Makefile
|
---|
| 53 |
|
---|
| 54 | cat ./src/methods/hopspack/src-shared/Makefile | sed 's/CFLAGS = -g -O2/CFLAGS = -g -O2 -fPIC/g' > temp
|
---|
| 55 | mv temp ./src/methods/hopspack/src-shared/Makefile
|
---|
| 56 |
|
---|
[11995] | 57 | cat ./src/methods/hopspack/src-shared/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp
|
---|
[11101] | 58 | mv temp ./src/methods/hopspack/src-shared/Makefile
|
---|
| 59 |
|
---|
| 60 | cat ./src/methods/hopspack/src-conveyor/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp
|
---|
| 61 | mv temp ./src/methods/hopspack/src-conveyor/Makefile
|
---|
| 62 |
|
---|
[11995] | 63 | cat ./src/methods/hopspack/src-appspack/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp
|
---|
[11101] | 64 | mv temp ./src/methods/hopspack/src-appspack/Makefile
|
---|
| 65 |
|
---|
| 66 | cat ./src/methods/acro/packages/colin/src/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CXXFLAGS = -O2 -fpermissive -fPIC/g' > temp
|
---|
| 67 | mv temp ./src/methods/acro/packages/colin/src/Makefile
|
---|
| 68 |
|
---|
| 69 | cat ./src/methods/acro/packages/coliny/src/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CXXFLAGS = -O2 -fpermissive -fPIC/g' > temp
|
---|
| 70 | mv temp ./src/methods/acro/packages/coliny/src/Makefile
|
---|
| 71 |
|
---|
| 72 | cat ./src/methods/acro/packages/tpl/3po/Makefile | sed 's/CFLAGS = -O2/CFLAGS = -O2 -fPIC/g' > temp
|
---|
| 73 | mv temp ./src/methods/acro/packages/tpl/3po/Makefile
|
---|
| 74 |
|
---|
| 75 | cat ./src/methods/acro/packages/tpl/3po/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CFLAGS = -O2 -fpermissive -fPIC/g' > temp
|
---|
| 76 | mv temp ./src/methods/acro/packages/tpl/3po/Makefile
|
---|
| 77 |
|
---|
[11995] | 78 | cat ./src/packages/ampl/Makefile | sed 's/CFLAGS = -g -O2 -D_NONSTD_SOURCE/CFLAGS = -g -O2 -fPIC/g' > temp
|
---|
[11101] | 79 | mv temp ./src/packages/ampl/Makefile
|
---|
| 80 |
|
---|
| 81 | #Compile and install dakota
|
---|
| 82 | cd src
|
---|
| 83 | if [ -z $NUMCPUS ];
|
---|
| 84 | then
|
---|
| 85 | make
|
---|
| 86 | make install
|
---|
| 87 | else
|
---|
| 88 | make -j $NUMCPUS
|
---|
| 89 | make -j $NUMCPUS install
|
---|
| 90 | fi
|
---|
| 91 | cd ..
|
---|
| 92 |
|
---|
| 93 | #Weird behaviour of Dakota: libamplsolver.a and amplsolver.a are not the same thing!
|
---|
| 94 | cd install/lib
|
---|
| 95 | mv libamplsolver.a libamplsolver.a.bak
|
---|
| 96 | ln -s ../../src/packages/ampl/amplsolver.a ./libamplsolver.a
|
---|