1 | #!/bin/bash
|
---|
2 | set -eu
|
---|
3 |
|
---|
4 | #Some cleanup
|
---|
5 | rm -rf Dakota
|
---|
6 | rm -rf src
|
---|
7 | rm -rf install
|
---|
8 | mkdir src install
|
---|
9 |
|
---|
10 | #Download from ISSM server
|
---|
11 | $ISSM_DIR/scripts/DownloadExternalPackage.py 'http://issm.jpl.nasa.gov/files/externalpackages/Dakota_4_3.src.tar.gz' 'Dakota_4_3.src.tar.gz'
|
---|
12 |
|
---|
13 | #Untar
|
---|
14 | tar -zxvf Dakota_4_3.src.tar.gz
|
---|
15 |
|
---|
16 | #Move Dakota to src directory
|
---|
17 | mv Dakota/* src
|
---|
18 | rm -rf Dakota
|
---|
19 |
|
---|
20 | #Apply patches
|
---|
21 | patch src/src/ParallelLibrary.C configs/4.2/ParallelLibrary.C.patch
|
---|
22 | patch src/src/ParallelLibrary.H configs/4.2/ParallelLibrary.H.patch
|
---|
23 | patch src/src/NIDRProblemDescDB.C configs/4.2/NIDRProblemDescDB.C.patch
|
---|
24 | patch src/src/NonDSampling.C configs/4.2/NonDSampling.C.patch
|
---|
25 | patch src/src/NonDLocalReliability.C configs/4.2/NonDLocalReliability.C.patch
|
---|
26 | patch src/src/NonDUnilevelRBDO.C configs/4.2/NonDUnilevelRBDO.C.patch # source not even used?
|
---|
27 | #patch -R src/packages/Pecos/src/LHSDriver.cpp configs/4.2/LHSDriver.cpp.patch
|
---|
28 |
|
---|
29 | #Configure dakota
|
---|
30 | cd src
|
---|
31 | ./configure \
|
---|
32 | --prefix="$ISSM_DIR/externalpackages/dakota/install" \
|
---|
33 | --without-graphics \
|
---|
34 | --with-pic \
|
---|
35 | --disable-mpi \
|
---|
36 | --with-blas="-L$ISSM_DIR/externalpackages/petsc/install/lib -lfblas " \
|
---|
37 | --with-lapack="-L$ISSM_DIR/externalpackages/petsc/install/lib -lflapack "
|
---|
38 | cd ..
|
---|
39 |
|
---|
40 | #Before compiling, if running on 64 bits, we need to active fPIC compilation. Some packages
|
---|
41 | #do not register -fPIC in Dakota, which is a problem. Edit the faulty Makefiles and add the -fPIC
|
---|
42 | #flag to the compilation.
|
---|
43 | cat ./src/methods/NCSUOpt/Makefile | sed 's/FFLAGS = -g -O2/FFLAGS = -g -O2 -fPIC/g' > temp
|
---|
44 | mv temp ./src/methods/NCSUOpt/Makefile
|
---|
45 |
|
---|
46 | cat ./src/methods/acro/packages/pebbl/src/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CXXFLAGS = -O2 -fpermissive -fPIC/g' > temp
|
---|
47 | mv temp ./src/methods/acro/packages/pebbl/src/Makefile
|
---|
48 |
|
---|
49 | cat ./src/methods/hopspack/src-nappspack/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp
|
---|
50 | mv temp ./src/methods/hopspack/src-nappspack/Makefile
|
---|
51 |
|
---|
52 | cat ./src/methods/hopspack/src-cddlib/Makefile | sed 's/CFLAGS = -g -O2/CFLAGS = -g -O2 -fPIC/g' > temp
|
---|
53 | mv temp ./src/methods/hopspack/src-cddlib/Makefile
|
---|
54 |
|
---|
55 | cat ./src/methods/hopspack/src-shared/Makefile | sed 's/CFLAGS = -g -O2/CFLAGS = -g -O2 -fPIC/g' > temp
|
---|
56 | mv temp ./src/methods/hopspack/src-shared/Makefile
|
---|
57 |
|
---|
58 | cat ./src/methods/hopspack/src-shared/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp
|
---|
59 | mv temp ./src/methods/hopspack/src-shared/Makefile
|
---|
60 |
|
---|
61 | cat ./src/methods/hopspack/src-conveyor/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp
|
---|
62 | mv temp ./src/methods/hopspack/src-conveyor/Makefile
|
---|
63 |
|
---|
64 | cat ./src/methods/hopspack/src-appspack/Makefile | sed 's/CXXFLAGS = -g -O2/CXXFLAGS = -g -O2 -fPIC/g' > temp
|
---|
65 | mv temp ./src/methods/hopspack/src-appspack/Makefile
|
---|
66 |
|
---|
67 | cat ./src/methods/acro/packages/colin/src/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CXXFLAGS = -O2 -fpermissive -fPIC/g' > temp
|
---|
68 | mv temp ./src/methods/acro/packages/colin/src/Makefile
|
---|
69 |
|
---|
70 | cat ./src/methods/acro/packages/coliny/src/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CXXFLAGS = -O2 -fpermissive -fPIC/g' > temp
|
---|
71 | mv temp ./src/methods/acro/packages/coliny/src/Makefile
|
---|
72 |
|
---|
73 | cat ./src/methods/acro/packages/tpl/3po/Makefile | sed 's/CFLAGS = -O2/CFLAGS = -O2 -fPIC/g' > temp
|
---|
74 | mv temp ./src/methods/acro/packages/tpl/3po/Makefile
|
---|
75 |
|
---|
76 | cat ./src/methods/acro/packages/tpl/3po/Makefile | sed 's/CXXFLAGS = -O2 -fpermissive/CFLAGS = -O2 -fpermissive -fPIC/g' > temp
|
---|
77 | mv temp ./src/methods/acro/packages/tpl/3po/Makefile
|
---|
78 |
|
---|
79 | cat ./src/packages/ampl/Makefile | sed 's/CFLAGS = -g -O2 -D_NONSTD_SOURCE/CFLAGS = -g -O2 -fPIC/g' > temp
|
---|
80 | mv temp ./src/packages/ampl/Makefile
|
---|
81 |
|
---|
82 | #Compile and install dakota
|
---|
83 | cd src
|
---|
84 | if [ $# -eq 0 ];
|
---|
85 | then
|
---|
86 | make
|
---|
87 | make install
|
---|
88 | else
|
---|
89 | make -j $1
|
---|
90 | make -j $1 install
|
---|
91 | fi
|
---|
92 | cd ..
|
---|
93 |
|
---|
94 | #Weird behaviour of Dakota: libamplsolver.a and amplsolver.a are not the same thing!
|
---|
95 | cd install/lib
|
---|
96 | mv libamplsolver.a libamplsolver.a.bak
|
---|
97 | ln -s ../../src/packages/ampl/amplsolver.a ./libamplsolver.a
|
---|