source: issm/oecreview/Archive/16554-17801/ISSM-16615-16616.diff@ 17802

Last change on this file since 17802 was 17802, checked in by Mathieu Morlighem, 11 years ago

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[17802]1Index: ../trunk-jpl/jenkins/linux64_murdo
2===================================================================
3--- ../trunk-jpl/jenkins/linux64_murdo (revision 0)
4+++ ../trunk-jpl/jenkins/linux64_murdo (revision 16616)
5@@ -0,0 +1,106 @@
6+#
7+########### Configuration file for Eric Larour's Jenkins run on Murdo ############
8+
9+#-------------------------------#
10+# 1: ISSM general configuration #
11+#-------------------------------#
12+
13+#Nightly run name
14+NAME="ISSM matlab tests on Linux64 (murdo)"
15+
16+#ISSM Architecture
17+ISSM_ARCH="linux-gnu-amd64"
18+
19+#ISSM CONFIGURATION
20+ISSM_CONFIG='--prefix=$ISSM_DIR\
21+ --with-matlab-dir=$MATLAB_DIR \
22+ --with-triangle-dir=$ISSM_DIR/externalpackages/triangle/install \
23+ --with-metis-dir=$ISSM_DIR/externalpackages/metis/install \
24+ --with-mpi-include=$ISSM_DIR/externalpackages/mpich/install/include \
25+ --with-mpi-libflags="-L$ISSM_DIR/externalpackages/mpich/install/lib/ -lmpich" \
26+ --with-petsc-dir=$ISSM_DIR/externalpackages/petsc/install \
27+ --with-petsc-arch=$ISSM_ARCH \
28+ --with-mumps-dir=$ISSM_DIR/externalpackages/petsc/install/ \
29+ --with-blas-lapack-dir=$ISSM_DIR/externalpackages/petsc/install \
30+ --with-chaco-dir="$ISSM_DIR/externalpackages/chaco/install" \
31+ --with-numthreads=18 \
32+ --with-cxxoptflags="-mtune=barcelona -ffast-math -O3 -msse4.2 -Wno-write-strings "\
33+ --with-graphics-lib="/usr/lib/x86_64-linux-gnu/libX11.so" \
34+ --with-tao-dir=$ISSM_DIR/externalpackages/tao/install \
35+ --enable-debugging '
36+
37+#MATLAB path
38+MATLAB_PATH="/usr/local/matlab80/"
39+
40+#PYTHON and MATLAB testing
41+MATLAB_TEST=1
42+PYTHON_TEST=0
43+
44+#execution path used for parallel runs
45+EXECUTION_PATH=$ISSM_DIR/execution
46+
47+#-----------------------------------#
48+# 3: External packages installation #
49+#-----------------------------------#
50+
51+#ISSM_EXTERNALPACKAGES can have 3 values:
52+# - "install" install all external packages listed below
53+# - "copy" copy existing directories (EXTERNALPACKAGESDIR)
54+# - "none" leave external packages as is
55+# ->skip to section 4
56+ISSM_EXTERNALPACKAGES="install"
57+EXTERNALPACKAGESDIR=$ISSM_DIR/externalpackages
58+
59+#List of external pakages to be installed and their installation scripts
60+EXTERNALPACKAGES="autotools install.sh
61+ matlab install.sh
62+ mpich install-3.0-linux64.sh
63+ cmake install.sh
64+ petsc install-3.4-linux64.sh
65+ triangle install-linux64.sh
66+ boost install.sh
67+ dakota install-5.3.1-linux64.sh
68+ tao install-2.2.sh
69+ chaco install.sh
70+ shell2junit install.sh"
71+
72+#---------------------#
73+# 4: ISSM Compilation #
74+#---------------------#
75+
76+#ISSM_COMPILATION can have 2 values:
77+# - "yes" compile ISSM
78+# - "no" do not compile ISSM
79+ISSM_COMPILATION="yes"
80+
81+#----------------------#
82+# 5: Mail notification #
83+#----------------------#
84+
85+#Mail delivery. If SKIPMAIL="no", the html nightly run report will be
86+#sent to the adresses present in $ISSM_DIR/cron/mailinglist.
87+SKIPMAIL="no"
88+
89+#Sender email address
90+EMAIL_ADRESS="eric.larour@jpl.nasa.gov"
91+
92+#Mailing list
93+MAILINGLIST="eric.larour@jpl.nasa.gov"
94+
95+#------------------------#
96+# 6: Nightly run options #
97+#------------------------#
98+
99+#number of cpus used in ISSM installation and compilation (one is usually
100+#safer as some packages are very sensitive to parallel compilation)
101+NUMCPUS_INSTALL=8
102+
103+#number of cpus used in the nightly runs.
104+NUMCPUS_RUN=8
105+
106+#Nightly run options. The matlab routine runme.m will be called
107+#as follows: runme($MATLAB_NROPTIONS). The options must be understandable
108+#by Matlab and runme.m
109+#ex: "'id',[101 102 103]"
110+MATLAB_NROPTIONS=""
111+PYTHON_NROPTIONS=""
112
113Property changes on: ../trunk-jpl/jenkins/linux64_murdo
114___________________________________________________________________
115Name: svn:executable
116 + *
117
118Index: ../trunk-jpl/jenkins/imac
119===================================================================
120--- ../trunk-jpl/jenkins/imac (revision 0)
121+++ ../trunk-jpl/jenkins/imac (revision 16616)
122@@ -0,0 +1,105 @@
123+#
124+########### Configuration file for Eric Larour's Jenkins run on MaxOSX ############
125+
126+#-------------------------------#
127+# 1: ISSM general configuration #
128+#-------------------------------#
129+
130+#Nightly run name
131+NAME="ISSM matlab tests on MacOSX"
132+
133+#ISSM Architecture
134+ISSM_ARCH="macosx-gnu"
135+
136+#ISSM CONFIGURATION
137+ISSM_CONFIG='--prefix=$ISSM_DIR \
138+ --with-matlab-dir=$MATLAB_DIR \
139+ --with-triangle-dir=$ISSM_DIR/externalpackages/triangle/install \
140+ --with-metis-dir=$ISSM_DIR/externalpackages/metis/install \
141+ --with-mpi-include=$ISSM_DIR/externalpackages/mpich/install/include \
142+ --with-mpi-libflags=" $ISSM_DIR/externalpackages/mpich/install/lib/libpmpich.a $ISSM_DIR/externalpackages/mpich/install/lib/libmpich.a $ISSM_DIR/externalpackages/mpich/install/lib/libmpl.a " \
143+ --with-fortran-lib="/usr/local/gfortran/lib/libgfortran.a" \
144+ --with-math-lib="/usr/lib/libm.dylib" \
145+ --with-graphics-lib="/usr/X11/lib/libX11.dylib" \
146+ --with-cxxoptflags=" -fno-common -no-cpp-precomp -fexceptions -arch x86_64 -mmacosx-version-min=10.5 -O3 -DNDEBUG -w "\
147+ --with-numthreads=8 \
148+ --with-petsc-dir=$ISSM_DIR/externalpackages/petsc/install \
149+ --with-petsc-arch=$ISSM_ARCH \
150+ --with-blas-lapack-dir=$ISSM_DIR/externalpackages/petsc/install \
151+ --with-scalapack-dir=$ISSM_DIR/externalpackages/petsc/install/ \
152+ --with-mumps-dir=$ISSM_DIR/externalpackages/petsc/install \
153+ --with-tao-dir=$ISSM_DIR/externalpackages/tao/install'
154+
155+#MATLAB path
156+MATLAB_PATH="/Applications/MATLAB_R2011b.app/"
157+
158+#PYTHON and MATLAB testing
159+MATLAB_TEST=1
160+PYTHON_TEST=0
161+
162+#execution path used for parallel runs
163+EXECUTION_PATH=$ISSM_DIR/execution
164+
165+#-----------------------------------#
166+# 3: External packages installation #
167+#-----------------------------------#
168+
169+#ISSM_EXTERNALPACKAGES can have 3 values:
170+# - "install" install all external packages listed below
171+# - "copy" copy existing directories (EXTERNALPACKAGESDIR)
172+# - "none" leave external packages as is
173+# ->skip to section 4
174+ISSM_EXTERNALPACKAGES="install"
175+EXTERNALPACKAGESDIR=$ISSM_DIR/externalpackages
176+
177+#List of external pakages to be installed and their installation scripts
178+EXTERNALPACKAGES="autotools install.sh
179+ matlab install.sh
180+ mpich install-3.0-macosx64.sh
181+ cmake install.sh
182+ petsc install-3.4-macosx64.sh
183+ tao install-2.2.sh
184+ triangle install-macosx64.sh
185+ shell2junit install.sh "
186+
187+
188+#---------------------#
189+# 4: ISSM Compilation #
190+#---------------------#
191+
192+#ISSM_COMPILATION can have 2 values:
193+# - "yes" compile ISSM
194+# - "no" do not compile ISSM
195+ISSM_COMPILATION="yes"
196+
197+#----------------------#
198+# 5: Mail notification #
199+#----------------------#
200+
201+#Mail delivery. If SKIPMAIL="no", the html nightly run report will be
202+#sent to the adresses present in $ISSM_DIR/cron/mailinglist.
203+SKIPMAIL="no"
204+
205+#Sender email address
206+EMAIL_ADRESS="eric.larour@jpl.nasa.gov"
207+
208+#Mailing list
209+MAILINGLIST="eric.larour@jpl.nasa.gov"
210+
211+#------------------------#
212+# 6: Nightly run options #
213+#------------------------#
214+
215+#number of cpus used in ISSM installation and compilation (one is usually
216+#safer as some packages are very sensitive to parallel compilation)
217+NUMCPUS_INSTALL=8
218+
219+#number of cpus used in the nightly runs.
220+NUMCPUS_RUN=1
221+
222+#Nightly run options. The matlab routine runme.m will be called
223+#as follows: runme($MATLAB_NROPTIONS). The options must be understandable
224+#by Matlab and runme.m
225+#ex: "'id',[101 102 103]"
226+MATLAB_NROPTIONS=""
227+PYTHON_NROPTIONS=""
228
229Property changes on: ../trunk-jpl/jenkins/imac
230___________________________________________________________________
231Name: svn:executable
232 + *
233
234Index: ../trunk-jpl/jenkins/jenkins.sh
235===================================================================
236--- ../trunk-jpl/jenkins/jenkins.sh (revision 0)
237+++ ../trunk-jpl/jenkins/jenkins.sh (revision 16616)
238@@ -0,0 +1,316 @@
239+#!/bin/bash
240+#This bash script calls the nightlyrun.m matlab file to run our nightly test decks.
241+#It then processes the results and sends an email to the Ice developpers.
242+
243+#some functions
244+function timer() #{{{
245+{
246+ if [[ $# -eq 0 ]]; then
247+ echo $(date '+%s')
248+ else
249+ local stime=$1
250+ etime=$(date '+%s')
251+
252+ if [[ -z "$stime" ]]; then stime=$etime; fi
253+
254+ dt=$((etime - stime))
255+ ds=$((dt % 60))
256+ dm=$(((dt / 60) % 60))
257+ dh=$((dt / 3600))
258+ printf '%d:%02d:%02d' $dh $dm $ds
259+ fi
260+} #}}}
261+function todaydate() #{{{
262+{
263+ suffix=`date | awk '{printf("%s-%s-%s %s",$2,$3,$6,$4);}'`
264+ echo $suffix;
265+} #}}}
266+function host_name() #{{{
267+{
268+ #return host name depending on the OS
269+ if [ "$1" = "win7" ]
270+ then
271+ HOST_NAME=`hostname | sed 's/-//g'`;
272+ else
273+ HOST_NAME=`hostname -s | sed 's/-//g'`;
274+ fi
275+ echo $HOST_NAME;
276+} #}}}
277+function pause() #{{{
278+{
279+pid=`ps aux -W | grep $1 | awk '{printf("%s\n",$1);}'`
280+
281+while [ -n "$pid" ]
282+do
283+ pid=`ps aux -W | grep $1 | awk '{printf("%s\n",$1);}'`
284+done
285+}
286+#}}}
287+
288+#Get configuration
289+#Source config file{{{
290+if [ $# -ne 1 ];
291+then
292+ #no config file specified: exit
293+ echo "no config file specified. Exiting..." >&2 # Error message to stderr.
294+ exit 1
295+fi
296+if [ ! -f "$1" ]
297+then
298+ echo "File $1 not found!" >&2 # Error message to stderr.
299+ exit 1
300+fi
301+source $1;
302+#}}}
303+#Initialize variables {{{
304+TODAY=$(todaydate);
305+HOST_NAME=$(host_name $OS);
306+OS=$(uname -s)
307+START_TIME=$(timer);
308+ISSM_RELEASE=$(basename $(echo $REPOSITORY));
309+USER=$(whoami);
310+INIT_PATH=$(pwd);
311+#}}}
312+
313+#Installation ISSM
314+#create matlab's installation sript {{{
315+cat << END > $ISSM_DIR/externalpackages/matlab/install.sh
316+#!/bin/bash
317+rm -rf install
318+ln -s $MATLAB_PATH install
319+END
320+#}}}
321+#install/copy/none external packages (ISSM_EXTERNALPACKAGES){{{
322+if [ "$ISSM_EXTERNALPACKAGES" == "install" ]
323+then
324+
325+ cd $ISSM_DIR/externalpackages
326+
327+ #number of packages:
328+ NUMPACKAGES=$(($(echo $EXTERNALPACKAGES | wc -w )/2))
329+
330+ for ((i=1;i<=$NUMPACKAGES;i++))
331+ do
332+ NUM1=$((2*$i-1))
333+ NUM2=$((2*$i))
334+ PACKAGENAME=$(echo $EXTERNALPACKAGES | cut -d " " -f $NUM1-$NUM1)
335+ PACKAGEINST=$(echo $EXTERNALPACKAGES | cut -d " " -f $NUM2-$NUM2)
336+
337+ cd $PACKAGENAME
338+ echo "======================================================";
339+ echo " Installing $PACKAGENAME ";
340+ echo "======================================================";
341+ ./$PACKAGEINST | tee compil.log
342+ if [ $? -ne 0 ]; then
343+ echo "======================================================";
344+ echo " ERROR: installation of $PACKAGENAME failed ";
345+ echo "======================================================";
346+ fi
347+ source $ISSM_DIR/etc/environment.sh
348+ cd ..
349+ done
350+
351+elif [ "$ISSM_EXTERNALPACKAGES" == "copy" ]
352+then
353+ cd $ISSM_DIR
354+ rm -rf externalpackages
355+ cp -Rf $EXTERNALPACKAGESDIR ./
356+elif [ "$ISSM_EXTERNALPACKAGES" == "link" ]
357+then
358+ cd $ISSM_DIR
359+ rm -rf externalpackages
360+ ln -s $EXTERNALPACKAGESDIR .
361+elif [ "$ISSM_EXTERNALPACKAGES" == "none" ]
362+then
363+ echo "Skipping external packages installation"
364+else
365+ echo "ISSM_EXTERNALPACKAGES supported values are: install, copy and none. Exiting..." >&2 # Error message to stderr.
366+ exit 1
367+fi
368+source $ISSM_DIR/etc/environment.sh
369+#}}}
370+#ISSM compilation yes/no (ISSM_COMPILATION) {{{
371+if [ "$ISSM_COMPILATION" == "yes" ]
372+then
373+ cd $ISSM_DIR
374+ make uninstall
375+ make clean
376+ make distclean
377+ ./scripts/automakererun.sh
378+ cat > configure.sh << EOF
379+./configure $ISSM_CONFIG
380+EOF
381+ chmod 700 configure.sh
382+ ./configure.sh
383+
384+ #4: compile and install ISSM
385+ if [ $NUMCPUS_INSTALL -gt 1 ]
386+ then
387+ echo "Making with " $NUMCPUS_INSTALL " cpus"
388+ make -j $NUMCPUS_INSTALL install
389+ else
390+ make install
391+ fi
392+elif [ "$ISSM_COMPILATION" == "no" ]
393+then
394+ echo "Skipping ISSM compilation"
395+else
396+ echo "ISSM_COMPILATION supported values are: yes and no. Exiting..." >&2 # Error message to stderr.
397+ exit 1
398+fi
399+#}}}
400+
401+#shell2junit {{{
402+source $ISSM_DIR/externalpackages/shell2junit/install/sh2ju.sh
403+#}}}
404+
405+#Prepare info.log
406+#{{{
407+rm -rf $ISSM_DIR/nightlylog
408+mkdir $ISSM_DIR/nightlylog
409+INSTALL_TIME=$(timer)
410+ELAPSED=$(timer $START_TIME)
411+VERSION=$(svnversion $ISSM_DIR)
412+cat << END > $ISSM_DIR/nightlylog/info.log
413+name: $(echo $NAME)
414+today: $(echo $TODAY)
415+user: $(echo $USER)
416+host: $(echo $HOST_NAME)
417+OS: $(echo $OS)
418+release: $(echo $ISSM_RELEASE)
419+init_path: $(echo $INIT_PATH)
420+is_matlab: $(echo $MATLAB_TEST)
421+is_python: $(echo $PYTHON_TEST)
422+elapsed_install: $(echo $ELAPSED)
423+version: $(echo $VERSION)
424+END
425+#}}}
426+
427+#matlab tests
428+if [ $MATLAB_TEST -eq 1 ]; then
429+#Launch all tests on different cpus {{{
430+MATLAB_START_TIME=$(timer);
431+for (( i=1;i<=$NUMCPUS_RUN;i++ ))
432+do
433+ #Launch matlab and the nightly run script
434+ cat > $ISSM_DIR/nightlylog/matlab_run$i.m << EOF
435+ warning off %necessary to avoid a info.log of several Go for parallel runs
436+ try,
437+ $(if [ "$MATLAB_NROPTIONS" = "" ]
438+ then
439+ echo "runme('output','nightly','rank',$i,'numprocs',$NUMCPUS_RUN);"
440+ else
441+ echo "runme($MATLAB_NROPTIONS,'output','nightly','rank',$i,'numprocs',$NUMCPUS_RUN);"
442+ fi
443+ )
444+ catch me,
445+ %An error occured, get report and exit
446+ message=getReport(me)
447+ directory=strsplit(pwd,'/');
448+ fid=fopen([issmdir '/nightlylog/matlaberror.log'], 'at');
449+ fprintf(fid,'\nMatlab error occured in: %s\n\n',directory{end});
450+ fprintf(fid,'%s',message);
451+ fclose(fid);
452+ end
453+ disp('MATLABEXITEDCORRECTLY');
454+ exit
455+EOF
456+ cd $ISSM_DIR/test/NightlyRun
457+ matlab -nojvm -nosplash -r "addpath $ISSM_DIR/src/m/dev; devpath; addpath $ISSM_DIR/nightlylog/; matlab_run$i" -logfile $ISSM_DIR/nightlylog/matlab_log$i.log &
458+done
459+
460+#wait until matlab closes
461+if [ "$OS" = "win7" ]; then
462+ pause MATLAB
463+else
464+ wait
465+fi
466+
467+#concatenate reports
468+cd $ISSM_DIR/nightlylog/
469+rm matlab_log.log
470+for (( i=1;i<=$NUMCPUS_RUN;i++ ))
471+do
472+ cat matlab_log$i.log >> matlab_log.log
473+done
474+
475+#filter out windows characters:
476+cat matlab_log.log | tr -cd '\11\12\40-\176' > matlab_log.log2 && mv matlab_log.log2 matlab_log.log
477+
478+#}}}
479+#Complete info.log {{{
480+if [ $(cat matlab_log.log | grep "MATLABEXITEDCORRECTLY" | wc -l) -eq $NUMCPUS_RUN ]
481+then
482+ MATLABCRASH=0
483+else
484+ MATLABCRASH=1
485+fi
486+ELAPSED=$(timer $MATLAB_START_TIME)
487+cat << END >> $ISSM_DIR/nightlylog/info.log
488+elapsed_matlab: $(echo $ELAPSED)
489+matlab_crash: $(echo $MATLABCRASH)
490+END
491+#}}}
492+fi
493+
494+#python tests
495+if [ $PYTHON_TEST -eq 1 ]; then
496+#Launch all tests on different cpus {{{
497+PYTHON_START_TIME=$(timer);
498+export PYTHONSTARTUP=$ISSM_DIR/src/m/dev/devpath.py
499+for (( i=1;i<=$NUMCPUS_RUN;i++ ))
500+do
501+ cd $ISSM_DIR/test/NightlyRun
502+ ./runme.py --output=nightly --rank=$i --numprocs=$NUMCPUS_RUN $PYTHON_NROPTIONS 2>&1 > $ISSM_DIR/nightlylog/python_log$i.log &
503+done
504+
505+#wait until python closes
506+if [ "$OS" = "win7" ]; then
507+ pause MATLAB
508+else
509+ wait
510+fi
511+
512+#concatenate reports
513+cd $ISSM_DIR/nightlylog/
514+rm python_log.log
515+for (( i=1;i<=$NUMCPUS_RUN;i++ ))
516+do
517+ cat python_log$i.log >> python_log.log
518+done
519+#}}}
520+#Complete info.log {{{
521+if [ $(cat python_log.log | grep "PYTHONEXITEDCORRECTLY" | wc -l) -eq $NUMCPUS_RUN ]
522+then
523+ PYTHONCRASH=0
524+else
525+ PYTHONCRASH=1
526+fi
527+ELAPSED=$(timer $PYTHON_START_TIME)
528+cat << END >> $ISSM_DIR/nightlylog/info.log
529+elapsed_python: $(echo $ELAPSED)
530+python_crash: $(echo $PYTHONCRASH)
531+END
532+#}}}
533+fi
534+
535+#complete info.log
536+#{{{
537+ELAPSED=$(timer $START_TIME)
538+cat << END >> $ISSM_DIR/nightlylog/info.log
539+elapsed_total: $(echo $ELAPSED)
540+END
541+#}}}
542+
543+#process logs to be junit compatible
544+#{{{
545+cd $ISSM_DIR/nightlylog/
546+juLogClean
547+
548+rm -rf juLogFile && cat matlab_log.log | grep "test id" > juLogFile
549+
550+while read i; do
551+ juLog -name=Error -error=ERROR echo $i
552+ juLog -name=Failure -error=FAILURE echo $i
553+done < juLogFile
554+#}}}
555
556Property changes on: ../trunk-jpl/jenkins/jenkins.sh
557___________________________________________________________________
558Name: svn:executable
559 + *
560
561Index: ../trunk-jpl/jenkins/linux64_larsen
562===================================================================
563--- ../trunk-jpl/jenkins/linux64_larsen (revision 0)
564+++ ../trunk-jpl/jenkins/linux64_larsen (revision 16616)
565@@ -0,0 +1,106 @@
566+#
567+########### Configuration file for Eric Larour's Jenkins run on Murdo ############
568+
569+#-------------------------------#
570+# 1: ISSM general configuration #
571+#-------------------------------#
572+
573+#Nightly run name
574+NAME="ISSM matlab tests on Linux64 (murdo)"
575+
576+#ISSM Architecture
577+ISSM_ARCH="linux-gnu-amd64"
578+
579+#ISSM CONFIGURATION
580+ISSM_CONFIG='--prefix=$ISSM_DIR\
581+ --with-matlab-dir=$MATLAB_DIR \
582+ --with-triangle-dir=$ISSM_DIR/externalpackages/triangle/install \
583+ --with-metis-dir=$ISSM_DIR/externalpackages/metis/install \
584+ --with-mpi-include=$ISSM_DIR/externalpackages/mpich/install/include \
585+ --with-mpi-libflags="-L$ISSM_DIR/externalpackages/mpich/install/lib/ -lmpich" \
586+ --with-petsc-dir=$ISSM_DIR/externalpackages/petsc/install \
587+ --with-petsc-arch=$ISSM_ARCH \
588+ --with-mumps-dir=$ISSM_DIR/externalpackages/petsc/install/ \
589+ --with-blas-lapack-dir=$ISSM_DIR/externalpackages/petsc/install \
590+ --with-chaco-dir="$ISSM_DIR/externalpackages/chaco/install" \
591+ --with-numthreads=18 \
592+ --with-cxxoptflags="-mtune=barcelona -ffast-math -O3 -msse4.2 -Wno-write-strings "\
593+ --with-graphics-lib="/usr/lib/x86_64-linux-gnu/libX11.so" \
594+ --with-tao-dir=$ISSM_DIR/externalpackages/tao/install \
595+ --enable-debugging '
596+
597+#MATLAB path
598+MATLAB_PATH="/usr/local/matlab80/"
599+
600+#PYTHON and MATLAB testing
601+MATLAB_TEST=1
602+PYTHON_TEST=0
603+
604+#execution path used for parallel runs
605+EXECUTION_PATH=$ISSM_DIR/execution
606+
607+#-----------------------------------#
608+# 3: External packages installation #
609+#-----------------------------------#
610+
611+#ISSM_EXTERNALPACKAGES can have 3 values:
612+# - "install" install all external packages listed below
613+# - "copy" copy existing directories (EXTERNALPACKAGESDIR)
614+# - "none" leave external packages as is
615+# ->skip to section 4
616+ISSM_EXTERNALPACKAGES="install"
617+EXTERNALPACKAGESDIR=$ISSM_DIR/externalpackages
618+
619+#List of external pakages to be installed and their installation scripts
620+EXTERNALPACKAGES="autotools install.sh
621+ matlab install.sh
622+ mpich install-3.0-linux64.sh
623+ cmake install.sh
624+ petsc install-3.4-linux64.sh
625+ triangle install-linux64.sh
626+ boost install.sh
627+ dakota install-5.3.1-linux64.sh
628+ tao install-2.2.sh
629+ chaco install.sh
630+ shell2junit install.sh"
631+
632+#---------------------#
633+# 4: ISSM Compilation #
634+#---------------------#
635+
636+#ISSM_COMPILATION can have 2 values:
637+# - "yes" compile ISSM
638+# - "no" do not compile ISSM
639+ISSM_COMPILATION="yes"
640+
641+#----------------------#
642+# 5: Mail notification #
643+#----------------------#
644+
645+#Mail delivery. If SKIPMAIL="no", the html nightly run report will be
646+#sent to the adresses present in $ISSM_DIR/cron/mailinglist.
647+SKIPMAIL="no"
648+
649+#Sender email address
650+EMAIL_ADRESS="eric.larour@jpl.nasa.gov"
651+
652+#Mailing list
653+MAILINGLIST="eric.larour@jpl.nasa.gov"
654+
655+#------------------------#
656+# 6: Nightly run options #
657+#------------------------#
658+
659+#number of cpus used in ISSM installation and compilation (one is usually
660+#safer as some packages are very sensitive to parallel compilation)
661+NUMCPUS_INSTALL=8
662+
663+#number of cpus used in the nightly runs.
664+NUMCPUS_RUN=8
665+
666+#Nightly run options. The matlab routine runme.m will be called
667+#as follows: runme($MATLAB_NROPTIONS). The options must be understandable
668+#by Matlab and runme.m
669+#ex: "'id',[101 102 103]"
670+MATLAB_NROPTIONS=""
671+PYTHON_NROPTIONS=""
672
673Property changes on: ../trunk-jpl/jenkins/linux64_larsen
674___________________________________________________________________
675Name: svn:executable
676 + *
677
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