justinquinn I get the same error at make
koitf1@koitf1-VirtualBox:~/trunk$ autoreconf -ivf; sudo make; sudo make install
autoreconf: Entering directory .'
autoreconf: configure.ac: not using Gettext
autoreconf: running: aclocal --force -I m4
autoreconf: configure.ac: tracing
autoreconf: running: libtoolize --copy --force
libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, './aux-config'.
libtoolize: copying file './aux-config/ltmain.sh'
libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'.
libtoolize: copying file 'm4/libtool.m4'
libtoolize: copying file 'm4/ltoptions.m4'
libtoolize: copying file 'm4/ltsugar.m4'
libtoolize: copying file 'm4/ltversion.m4'
libtoolize: copying file 'm4/lt~obsolete.m4'
autoreconf: running: /usr/bin/autoconf --force
autoreconf: running: /usr/bin/autoheader --force
autoreconf: running: automake --add-missing --copy --force-missing
configure.ac:18: installing './aux-config/compile'
configure.ac:26: installing './aux-config/missing'
src/c/Makefile.am: installing './aux-config/depcomp'
autoreconf: Leaving directory
.'
[sudo] password for koitf1:
/bin/bash ./config.status --recheck
running CONFIG_SHELL=/bin/bash /bin/bash ./configure --prefix= --with-numthreads=2 --with-matlab-dir=/usr/local/MATLAB/R2021a --with-fortran-lib=-L/usr/lib/gcc/x86_64-linux-gnu/9 -lgfortran --with-mpi-include=/home/koitf1/trunk/externalpackages/petsc/install/include --with-mpi-libflags=-L/home/koitf1/trunk/externalpackages/petsc/install/lib -lmpi -lmpicxx -lmpifort --with-metis-dir=/home/koitf1/trunk/externalpackages/petsc/install --with-parmetis-dir=/home/koitf1/trunk/externalpackages/petsc/install --with-blas-lapack-dir=/home/koitf1/trunk/externalpackages/petsc/install --with-scalapack-dir=/home/koitf1/trunk/externalpackages/petsc/install --with-mumps-dir=/home/koitf1/trunk/externalpackages/petsc/install --with-petsc-dir=/home/koitf1/trunk/externalpackages/petsc/install --with-triangle-dir=/home/koitf1/trunk/externalpackages/triangle/install --with-chaco-dir=/home/koitf1/trunk/externalpackages/chaco/install --with-m1qn3-dir=/home/koitf1/trunk/externalpackages/m1qn3/install --with-semic-dir=/home/koitf1/trunk/externalpackages/semic/install --no-create --no-recursion
configure: WARNING: unrecognized options: --with-parmetis-dir
configure: ============================================================================
configure: = Ice Sheet System Model (ISSM) 4.18 configuration =
configure: ============================================================================
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking target system type... x86_64-pc-linux-gnu
checking for icc... no
checking for cl... no
checking for icl... no
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether gcc understands -c and -o together... yes
checking how to run the C preprocessor... gcc -E
checking for icpc... no
checking for cl... no
checking for icl... no
checking for g++... g++
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking for ifort... no
checking for g77... no
checking for gfortran... gfortran
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether gfortran accepts -g... yes
checking for ifort... no
checking for gfortran... gfortran
checking whether we are using the GNU Fortran compiler... yes
checking whether gfortran accepts -g... yes
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /usr/bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports the include directive... yes (GNU style)
checking whether make supports nested variables... yes
checking dependency style of gcc... gcc3
checking dependency style of g++... gcc3
checking whether make supports nested variables... (cached) yes
checking for ar... ar
checking the archiver (ar) interface... ar
checking how to print strings... printf
checking for a sed that does not truncate output... /usr/bin/sed
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for fgrep... /usr/bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop
checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
checking for a working dd... /usr/bin/dd
checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1
checking for mt... mt
checking if mt is a manifest tool... no
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... yes
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking how to run the C++ preprocessor... g++ -E
checking for ld used by g++... /usr/bin/ld -m elf_x86_64
checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes
checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking for g++ option to produce PIC... -fPIC -DPIC
checking if g++ PIC flag -fPIC -DPIC works... yes
checking if g++ static flag -static works... yes
checking if g++ supports -c -o file.o... yes
checking if g++ supports -c -o file.o... (cached) yes
checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for gfortran option to produce PIC... -fPIC
checking if gfortran PIC flag -fPIC works... yes
checking if gfortran static flag -static works... yes
checking if gfortran supports -c -o file.o... yes
checking if gfortran supports -c -o file.o... (cached) yes
checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for gfortran option to produce PIC... -fPIC
checking if gfortran PIC flag -fPIC works... yes
checking if gfortran static flag -static works... yes
checking if gfortran supports -c -o file.o... yes
checking if gfortran supports -c -o file.o... (cached) yes
checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
configure: ============================================================================
configure: = Checking ISSM specific options =
configure: ============================================================================
checking for date... /usr/bin/date
checking for build date... Wed Dec 8 13:09:37 MST 2021
checking user name... root
checking host full OS name and version... linux
checking host cpu... x86_64
checking vendor... pc
checking host OS name... linux
checking host OS version... 5.11.0-41-generic
checking host OS architecture... x86_64
checking for debugging support... no
checking for development support... no
checking for standalone modules build... no
checking for standalone executables build... no
checking for standalone libraries build... no
checking for wrappers compilation... yes
checking if this is a Mac build... no
checking if system copy of libc has fmemopen... yes
checking for vendor compilers... done
checking if this is a Windows build... no
checking for MATLAB... yes
checking MATLAB's mex compilation flags... done
checking for JavaScript... no
checking for triangle... yes
checking for Boost... no
checking for Dakota... no
checking for Python... no
checking for python-numpy... no
checking for Chaco... yes
checking for ESMF... no
checking for CoDiPack... no
checking for tape allocation... no
checking for ADOL-C... no
checking for ADOL-C version... 2
checking for ADIC2... no
checking for ATLAS and CBLAS libraries... no
checking for GSL... no
checking for AMPI... no
checking for Adjoint MPI... no
checking for MeDiPack... no
checking for HDF5 libraries... no
checking for PETSc... yes
checking for PETSc version... 3.12
checking whether PETSc is the development version... no
checking for PETSc libraries and header files in /home/koitf1/trunk/externalpackages/petsc/install... done
checking for MPI... yes
checking for SCOTCH... no
checking for TAO... yes
checking for M1QN3... yes
checking for PROJ... no
checking for SLEPc... no
checking for shapelib... no
checking for ScaLAPACK... yes
checking for BLAS/LAPACK... yes
checking for MKL... no
checking for PlaLAPACK... no
checking for MUMPS... yes
checking for BLACS... no
checking for HYPRE... no
checking for Prometheus... no
checking for SEMIC... yes
checking for SPAI... no
checking for SuperLU... no
checking for SPOOLES... no
checking for PaStiX... no
checking for ml... no
checking for UMFPACK... no
checking for libm... done
checking for MATH77... no
checking for Fortran compilation... yes
checking for Fortran library... done
checking for Xlib (graphics library)... done
checking for MeteoIO... no
checking for SNOWPACK... no
checking for NeoPZ... no
checking for Gmsh... no
checking for BAMG capability compilation... yes
checking for ice/ocean coupling capability compilation... no
checking for kml capability compilation... no
checking for kriging capability compilation... yes
checking for AdjointBalancethickness2 capability compilation... yes
checking for AdjointBalancethickness capability compilation... yes
checking for AdjointHoriz capability compilation... yes
checking for Balancethickness2 capability compilation... yes
checking for Balancethickness capability compilation... yes
checking for BalancethicknessSoft capability compilation... yes
checking for Balancevelocity capability compilation... yes
checking for DamageEvolution capability compilation... yes
checking for DepthAverage capability compilation... yes
checking for Enthalpy capability compilation... yes
checking for Esa capability compilation... yes
checking for Extrapolation capability compilation... yes
checking for ExtrudeFromBase capability compilation... yes
checking for ExtrudeFromTop capability compilation... yes
checking for FreeSurfaceBase capability compilation... yes
checking for FreeSurfaceTop capability compilation... yes
checking for GLheightadvection capability compilation... yes
checking for Gia capability compilation... yes
checking for HydrologyDCEfficient capability compilation... yes
checking for HydrologyDCInefficient capability compilation... yes
checking for HydrologyShreve capability compilation... yes
checking for HydrologyGlaDS capability compilation... yes
checking for HydrologyShakti capability compilation... yes
checking for HydrologyPism capability compilation... yes
checking for L2ProjectionBase capability compilation... yes
checking for L2ProjectionEPL capability compilation... yes
checking for Levelset capability compilation... yes
checking for Love capability compilation... yes
checking for Masstransport capability compilation... yes
checking for Melting capability compilation... yes
checking for Sealevelrise capability compilation... yes
checking for Smb capability compilation... yes
checking for Smooth capability compilation... yes
checking for Stressbalance capability compilation... yes
checking for StressbalanceSIA capability compilation... yes
checking for StressbalanceVertical capability compilation... yes
checking for Thermal capability compilation... yes
checking for UzawaPressure capability compilation... yes
checking for iOS compilation... no
checking for Android capability compilation... no
checking with Android Native Development Kit (NDK)... no
checking for C++ optimization flags... done
checking for number of threads... 2
checking for 64-bit indices... 0
checking consistency between all libraries... done
checking that generated files are newer than configure... done
configure: creating ./config.status
configure: WARNING: unrecognized options: --with-parmetis-dir
/bin/bash ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating src/c/Makefile
config.status: creating src/wrappers/Makefile
config.status: creating src/wrappers/python/Makefile
config.status: creating src/wrappers/matlab/Makefile
config.status: creating src/wrappers/javascript/Makefile
config.status: creating src/mobile/Makefile
config.status: creating src/mobile/native/Makefile
config.status: creating src/m/Makefile
config.status: creating ./config.h
config.status: executing depfiles commands
config.status: executing libtool commands
make all-recursive
make[1]: Entering directory '/home/koitf1/trunk'
Making all in src
make[2]: Entering directory '/home/koitf1/trunk/src'
Making all in c
make[3]: Entering directory '/home/koitf1/trunk/src/c'
CXX main/issm-issm.o
CXX bamg/libISSMCore_la-BamgGeom.lo
CXX bamg/libISSMCore_la-BamgMesh.lo
CXX bamg/libISSMCore_la-BamgOpts.lo
CXX bamg/libISSMCore_la-CrackedEdge.lo
CXX bamg/libISSMCore_la-Curve.lo
CXX bamg/libISSMCore_la-Edge.lo
CXX bamg/libISSMCore_la-GeomEdge.lo
CXX bamg/libISSMCore_la-GeomSubDomain.lo
CXX bamg/libISSMCore_la-GeomVertex.lo
CXX bamg/libISSMCore_la-Geometry.lo
CXX bamg/libISSMCore_la-ListofIntersectionTriangles.lo
CXX bamg/libISSMCore_la-EigenMetric.lo
CXX bamg/libISSMCore_la-Metric.lo
CXX bamg/libISSMCore_la-BamgQuadtree.lo
CXX bamg/libISSMCore_la-SetOfE4.lo
CXX bamg/libISSMCore_la-SubDomain.lo
CXX bamg/libISSMCore_la-AdjacentTriangle.lo
CXX bamg/libISSMCore_la-Triangle.lo
CXX bamg/libISSMCore_la-BamgVertex.lo
CXX bamg/libISSMCore_la-VertexOnEdge.lo
CXX bamg/libISSMCore_la-VertexOnGeom.lo
CXX bamg/libISSMCore_la-VertexOnVertex.lo
CXX bamg/libISSMCore_la-Mesh.lo
CXX modules/Bamgx/libISSMCore_la-Bamgx.lo
CXX modules/BamgConvertMeshx/libISSMCore_la-BamgConvertMeshx.lo
CXX modules/BamgTriangulatex/libISSMCore_la-BamgTriangulatex.lo
CXX classes/libISSMCore_la-AmrBamg.lo
CXX datastructures/libISSMCore_la-DataSet.lo
CXX classes/gauss/libISSMCore_la-GaussSeg.lo
CXX classes/gauss/libISSMCore_la-GaussTria.lo
CXX classes/gauss/libISSMCore_la-GaussTetra.lo
CXX classes/gauss/libISSMCore_la-GaussPenta.lo
CXX classes/libISSMCore_la-IoModel.lo
CXX classes/libISSMCore_la-FemModel.lo
CXX classes/Loads/libISSMCore_la-Friction.lo
CXX classes/Constraints/libISSMCore_la-SpcTransient.lo
CXX classes/libISSMCore_la-DependentObject.lo
CXX classes/libISSMCore_la-Contours.lo
CXX classes/libISSMCore_la-Vertices.lo
CXX classes/libISSMCore_la-Nodes.lo
CXX classes/libISSMCore_la-Numberedcostfunction.lo
CXX classes/libISSMCore_la-Misfit.lo
CXX classes/libISSMCore_la-Cfsurfacesquare.lo
CXX classes/libISSMCore_la-Cfdragcoeffabsgrad.lo
CXX classes/libISSMCore_la-Cfsurfacelogvel.lo
CXX classes/libISSMCore_la-Regionaloutput.lo
CXX classes/libISSMCore_la-Nodalvalue.lo
CXX classes/libISSMCore_la-Node.lo
CXX classes/libISSMCore_la-Vertex.lo
CXX classes/libISSMCore_la-Hook.lo
CXX classes/libISSMCore_la-Radar.lo
CXX classes/ExternalResults/libISSMCore_la-Results.lo
CXX classes/Elements/libISSMCore_la-Element.lo
CXX classes/Elements/libISSMCore_la-Elements.lo
CXX classes/Elements/libISSMCore_la-ElementHook.lo
CXX classes/Elements/libISSMCore_la-Seg.lo
CXX classes/Elements/libISSMCore_la-SegRef.lo
CXX classes/Elements/libISSMCore_la-Tria.lo
CXX classes/Elements/libISSMCore_la-TriaRef.lo
CXX classes/Elements/libISSMCore_la-Tetra.lo
CXX classes/Elements/libISSMCore_la-TetraRef.lo
CXX classes/Elements/libISSMCore_la-Penta.lo
CXX classes/Elements/libISSMCore_la-PentaRef.lo
CXX classes/Materials/libISSMCore_la-Materials.lo
CXX classes/Materials/libISSMCore_la-Matice.lo
CXX classes/Materials/libISSMCore_la-Matlitho.lo
CXX classes/Materials/libISSMCore_la-Matestar.lo
CXX classes/Constraints/libISSMCore_la-Constraints.lo
CXX classes/Constraints/libISSMCore_la-SpcStatic.lo
CXX classes/Constraints/libISSMCore_la-SpcDynamic.lo
CXX classes/Loads/libISSMCore_la-Channel.lo
CXX classes/Loads/libISSMCore_la-Loads.lo
CXX classes/Loads/libISSMCore_la-Penpair.lo
CXX classes/Loads/libISSMCore_la-Pengrid.lo
CXX classes/Loads/libISSMCore_la-Moulin.lo
CXX classes/Loads/libISSMCore_la-Numericalflux.lo
CXX classes/Loads/libISSMCore_la-Neumannflux.lo
CXX classes/matrix/libISSMCore_la-ElementMatrix.lo
CXX classes/matrix/libISSMCore_la-ElementVector.lo
CXX classes/Params/libISSMCore_la-Parameters.lo
CXX classes/Params/libISSMCore_la-BoolParam.lo
CXX classes/Params/libISSMCore_la-IntParam.lo
CXX classes/Params/libISSMCore_la-IntVecParam.lo
CXX classes/Params/libISSMCore_la-IntMatParam.lo
CXX classes/Params/libISSMCore_la-DoubleParam.lo
CXX classes/Params/libISSMCore_la-FileParam.lo
CXX classes/Params/libISSMCore_la-StringArrayParam.lo
CXX classes/Params/libISSMCore_la-DoubleMatParam.lo
CXX classes/Params/libISSMCore_la-DoubleTransientMatParam.lo
CXX classes/Params/libISSMCore_la-DoubleMatArrayParam.lo
CXX classes/Params/libISSMCore_la-DoubleVecParam.lo
CXX classes/Params/libISSMCore_la-StringParam.lo
CXX classes/Params/libISSMCore_la-MatrixParam.lo
CXX classes/Params/libISSMCore_la-VectorParam.lo
CXX classes/Params/libISSMCore_la-TransientParam.lo
CXX classes/Params/libISSMCore_la-TransientArrayParam.lo
CXX classes/Params/libISSMCore_la-DataSetParam.lo
CXX classes/libISSMCore_la-Profiler.lo
CXX shared/Matrix/libISSMCore_la-MatrixUtils.lo
CXX shared/io/Disk/libISSMCore_la-pfopen.lo
CXX shared/io/Disk/libISSMCore_la-pfclose.lo
CXX shared/io/Disk/libISSMCore_la-WriteLockFile.lo
CXX shared/io/Print/libISSMCore_la-PrintfFunction.lo
CXX shared/io/Comm/libISSMCore_la-IssmComm.lo
CXX shared/io/Marshalling/libISSMCore_la-IoCodeConversions.lo
CXX shared/io/Marshalling/libISSMCore_la-Marshalling.lo
CXX shared/LatLong/libISSMCore_la-Ll2xyx.lo
CXX shared/LatLong/libISSMCore_la-Xy2llx.lo
CXX shared/FSanalyticals/libISSMCore_la-fsanalyticals.lo
CXX shared/Enum/libISSMCore_la-EnumToStringx.lo
CXX shared/Enum/libISSMCore_la-StringToEnumx.lo
CXX shared/Numerics/libISSMCore_la-Verbosity.lo
CXX shared/Numerics/libISSMCore_la-GaussPoints.lo
CXX shared/Numerics/libISSMCore_la-cross.lo
CXX shared/Numerics/libISSMCore_la-cubic.lo
CXX shared/Numerics/libISSMCore_la-NewtonSolveDnorm.lo
CXX shared/Numerics/libISSMCore_la-ODE1.lo
CXX shared/Numerics/libISSMCore_la-extrema.lo
CXX shared/Numerics/libISSMCore_la-legendre.lo
CXX shared/Numerics/libISSMCore_la-XZvectorsToCoordinateSystem.lo
CXX shared/Exceptions/libISSMCore_la-Exceptions.lo
CXX shared/Sorting/libISSMCore_la-binary_search.lo
CXX shared/Elements/libISSMCore_la-Cuffey.lo
CXX shared/Elements/libISSMCore_la-BuddJacka.lo
CXX shared/Elements/libISSMCore_la-CuffeyTemperate.lo
CXX shared/Elements/libISSMCore_la-StressIntensityIntegralWeight.lo
CXX shared/Elements/libISSMCore_la-Paterson.lo
CXX shared/Elements/libISSMCore_la-Arrhenius.lo
CXX shared/Elements/libISSMCore_la-NyeCO2.lo
CXX shared/Elements/libISSMCore_la-NyeH2O.lo
CXX shared/Elements/libISSMCore_la-LliboutryDuval.lo
CXX shared/Elements/libISSMCore_la-PrintArrays.lo
CXX shared/Elements/libISSMCore_la-PddSurfaceMassBalance.lo
CXX shared/Elements/libISSMCore_la-PddSurfaceMassBalanceSicopolis.lo
CXX shared/Elements/libISSMCore_la-ComputeDelta18oTemperaturePrecipitation.lo
CXX shared/Elements/libISSMCore_la-ComputeMungsmTemperaturePrecipitation.lo
CXX shared/Elements/libISSMCore_la-ComputeD18OTemperaturePrecipitationFromPD.lo
CXX shared/Elements/libISSMCore_la-DrainageFunctionWaterfraction.lo
CXX shared/Elements/libISSMCore_la-EstarComponents.lo
CXX shared/String/libISSMCore_la-DescriptorIndex.lo
CXX toolkits/issm/libISSMCore_la-IssmToolkitUtils.lo
CXX toolkits/issm/libISSMCore_la-IssmSolver.lo
CXX toolkits/mpi/libISSMCore_la-issmmpi.lo
CXX toolkits/mpi/commops/libISSMCore_la-DetermineLocalSize.lo
CXX toolkits/mpi/commops/libISSMCore_la-DetermineGlobalSize.lo
CXX toolkits/mpi/commops/libISSMCore_la-DetermineRowRankFromLocalSize.lo
CXX toolkits/mpi/commops/libISSMCore_la-GetOwnershipBoundariesFromRange.lo
CXX toolkits/libISSMCore_la-ToolkitOptions.lo
CXX modules/ModelProcessorx/libISSMCore_la-ModelProcessorx.lo
CXX modules/ModelProcessorx/libISSMCore_la-ElementsAndVerticesPartitioning.lo
CXX modules/ModelProcessorx/libISSMCore_la-NodesPartitioning.lo
CXX modules/ModelProcessorx/libISSMCore_la-EdgesPartitioning.lo
CXX modules/ModelProcessorx/libISSMCore_la-FacesPartitioning.lo
CXX modules/ModelProcessorx/libISSMCore_la-CreateParameters.lo
CXX modules/ModelProcessorx/Autodiff/libISSMCore_la-CreateParametersAutodiff.lo
CXX modules/ModelProcessorx/libISSMCore_la-CreateFaces.lo
CXX modules/ModelProcessorx/libISSMCore_la-CreateEdges.lo
CXX modules/ModelProcessorx/libISSMCore_la-CreateSingleNodeToElementConnectivity.lo
CXX modules/ModelProcessorx/libISSMCore_la-CreateNumberNodeToElementConnectivity.lo
CXX modules/ModelProcessorx/libISSMCore_la-CreateElementsVerticesAndMaterials.lo
CXX modules/ModelProcessorx/libISSMCore_la-CreateNodes.lo
CXX modules/ParseToolkitsOptionsx/libISSMCore_la-ParseToolkitsOptionsx.lo
CXX modules/NodesDofx/libISSMCore_la-NodesDofx.lo
CXX modules/NodalValuex/libISSMCore_la-NodalValuex.lo
CXX modules/VertexCoordinatesx/libISSMCore_la-VertexCoordinatesx.lo
CXX modules/OutputResultsx/libISSMCore_la-OutputResultsx.lo
CXX modules/InputDepthAverageAtBasex/libISSMCore_la-InputDepthAverageAtBasex.lo
CXX modules/InputDuplicatex/libISSMCore_la-InputDuplicatex.lo
CXX modules/InputExtrudex/libISSMCore_la-InputExtrudex.lo
CXX modules/SurfaceAreax/libISSMCore_la-SurfaceAreax.lo
CXX modules/AllocateSystemMatricesx/libISSMCore_la-AllocateSystemMatricesx.lo
CXX modules/CreateJacobianMatrixx/libISSMCore_la-CreateJacobianMatrixx.lo
CXX modules/SystemMatricesx/libISSMCore_la-SystemMatricesx.lo
CXX modules/CreateNodalConstraintsx/libISSMCore_la-CreateNodalConstraintsx.lo
CXX modules/UpdateDynamicConstraintsx/libISSMCore_la-UpdateDynamicConstraintsx.lo
CXX modules/IoModelToConstraintsx/libISSMCore_la-IoModelToConstraintsx.lo
CXX modules/SetActiveNodesLSMx/libISSMCore_la-SetActiveNodesLSMx.lo
CXX modules/InputUpdateFromConstantx/libISSMCore_la-InputUpdateFromConstantx.lo
CXX modules/InputUpdateFromSolutionx/libISSMCore_la-InputUpdateFromSolutionx.lo
CXX modules/GeothermalFluxx/libISSMCore_la-GeothermalFluxx.lo
CXX modules/GetSolutionFromInputsx/libISSMCore_la-GetSolutionFromInputsx.lo
CXX modules/GetVectorFromInputsx/libISSMCore_la-GetVectorFromInputsx.lo
CXX modules/InputUpdateFromVectorx/libISSMCore_la-InputUpdateFromVectorx.lo
CXX modules/FloatingiceMeltingRatex/libISSMCore_la-FloatingiceMeltingRatex.lo
CXX modules/FloatingiceMeltingRatePicox/libISSMCore_la-FloatingiceMeltingRatePicox.lo
CXX modules/FrontalForcingsx/libISSMCore_la-FrontalForcingsx.lo
CXX modules/ConfigureObjectsx/libISSMCore_la-ConfigureObjectsx.lo
CXX modules/SpcNodesx/libISSMCore_la-SpcNodesx.lo
CXX modules/SurfaceMassBalancex/libISSMCore_la-SurfaceMassBalancex.lo
CXX modules/SurfaceMassBalancex/libISSMCore_la-Gembx.lo
CXX modules/Reducevectorgtofx/libISSMCore_la-Reducevectorgtofx.lo
CXX modules/Reduceloadx/libISSMCore_la-Reduceloadx.lo
CXX modules/ConstraintsStatex/libISSMCore_la-ConstraintsStatex.lo
CXX modules/ResetConstraintsx/libISSMCore_la-ResetConstraintsx.lo
CXX modules/ResetFSBasalBoundaryConditionx/libISSMCore_la-ResetFSBasalBoundaryConditionx.lo
CXX modules/Solverx/libISSMCore_la-Solverx.lo
CXX modules/Mergesolutionfromftogx/libISSMCore_la-Mergesolutionfromftogx.lo
CXX cores/libISSMCore_la-ProcessArguments.lo
CXX cores/libISSMCore_la-ResetBoundaryConditions.lo
CXX cores/libISSMCore_la-WrapperCorePointerFromSolutionEnum.lo
CXX cores/libISSMCore_la-CorePointerFromSolutionEnum.lo
CXX cores/libISSMCore_la-ad_core.lo
CXX cores/libISSMCore_la-adgradient_core.lo
CXX main/libISSMCore_la-EnvironmentInit.lo
CXX main/libISSMCore_la-EnvironmentFinalize.lo
CXX analyses/libISSMCore_la-EnumToAnalysis.lo
CXX solutionsequences/libISSMCore_la-solutionsequence_la.lo
CXX solutionsequences/libISSMCore_la-solutionsequence_la_theta.lo
CXX solutionsequences/libISSMCore_la-solutionsequence_linear.lo
CXX solutionsequences/libISSMCore_la-solutionsequence_nonlinear.lo
CXX solutionsequences/libISSMCore_la-solutionsequence_newton.lo
CXX solutionsequences/libISSMCore_la-solutionsequence_fct.lo
CXX solutionsequences/libISSMCore_la-solutionsequence_schurcg.lo
CXX solutionsequences/libISSMCore_la-convergence.lo
CXX classes/Options/libISSMCore_la-Options.lo
CXX classes/Options/libISSMCore_la-OptionUtilities.lo
CXX classes/libISSMCore_la-RiftStruct.lo
CXX modules/ModelProcessorx/Transient/libISSMCore_la-UpdateElementsTransient.lo
CXX cores/libISSMCore_la-transient_core.lo
CXX cores/libISSMCore_la-steadystate_core.lo
CXX cores/libISSMCore_la-masstransport_core.lo
CXX cores/libISSMCore_la-depthaverage_core.lo
CXX cores/libISSMCore_la-extrudefrombase_core.lo
CXX cores/libISSMCore_la-extrudefromtop_core.lo
CXX cores/libISSMCore_la-thermal_core.lo
CXX cores/libISSMCore_la-smb_core.lo
CXX cores/libISSMCore_la-bmb_core.lo
CXX solutionsequences/libISSMCore_la-solutionsequence_thermal_nonlinear.lo
CXX modules/ControlInputSetGradientx/libISSMCore_la-ControlInputSetGradientx.lo
CXX modules/GetVectorFromControlInputsx/libISSMCore_la-GetVectorFromControlInputsx.lo
CXX modules/SetControlInputsFromVectorx/libISSMCore_la-SetControlInputsFromVectorx.lo
CXX modules/ModelProcessorx/Control/libISSMCore_la-CreateParametersControl.lo
CXX modules/ModelProcessorx/Control/libISSMCore_la-UpdateElementsAndMaterialsControl.lo
CXX modules/SurfaceAbsVelMisfitx/libISSMCore_la-SurfaceAbsVelMisfitx.lo
CXX modules/SurfaceRelVelMisfitx/libISSMCore_la-SurfaceRelVelMisfitx.lo
CXX modules/SurfaceLogVelMisfitx/libISSMCore_la-SurfaceLogVelMisfitx.lo
CXX modules/SurfaceLogVxVyMisfitx/libISSMCore_la-SurfaceLogVxVyMisfitx.lo
CXX modules/SurfaceAverageVelMisfitx/libISSMCore_la-SurfaceAverageVelMisfitx.lo
CXX modules/ThicknessAbsMisfitx/libISSMCore_la-ThicknessAbsMisfitx.lo
CXX modules/Gradjx/libISSMCore_la-Gradjx.lo
CXX modules/DragCoefficientAbsGradientx/libISSMCore_la-DragCoefficientAbsGradientx.lo
CXX modules/ThicknessAlongGradientx/libISSMCore_la-ThicknessAlongGradientx.lo
CXX modules/ThicknessAcrossGradientx/libISSMCore_la-ThicknessAcrossGradientx.lo
CXX modules/RheologyBbarAbsGradientx/libISSMCore_la-RheologyBbarAbsGradientx.lo
CXX modules/RheologyBAbsGradientx/libISSMCore_la-RheologyBAbsGradientx.lo
CXX shared/Numerics/libISSMCore_la-BrentSearch.lo
CXX cores/libISSMCore_la-control_core.lo
CXX cores/libISSMCore_la-controltao_core.lo
CXX cores/libISSMCore_la-controlm1qn3_core.lo
CXX cores/libISSMCore_la-controladm1qn3_core.lo
CXX cores/libISSMCore_la-controlvalidation_core.lo
CXX cores/libISSMCore_la-adjointstressbalance_core.lo
CXX cores/libISSMCore_la-adjointbalancethickness_core.lo
CXX cores/libISSMCore_la-adjointbalancethickness2_core.lo
CXX cores/libISSMCore_la-AdjointCorePointerFromSolutionEnum.lo
CXX solutionsequences/libISSMCore_la-solutionsequence_adjoint_linear.lo
CXX cores/libISSMCore_la-hydrology_core.lo
CXX solutionsequences/libISSMCore_la-solutionsequence_hydro_nonlinear.lo
CXX solutionsequences/libISSMCore_la-solutionsequence_shakti_nonlinear.lo
CXX solutionsequences/libISSMCore_la-solutionsequence_glads_nonlinear.lo
CXX cores/libISSMCore_la-stressbalance_core.lo
CXX solutionsequences/libISSMCore_la-solutionsequence_stokescoupling_nonlinear.lo
CXX cores/libISSMCore_la-balancethickness_core.lo
CXX cores/libISSMCore_la-balancethickness2_core.lo
CXX cores/libISSMCore_la-balancevelocity_core.lo
CXX cores/libISSMCore_la-surfaceslope_core.lo
CXX cores/libISSMCore_la-bedslope_core.lo
CXX cores/libISSMCore_la-damage_core.lo
CXX cores/libISSMCore_la-levelsetfunctionslope_core.lo
CXX cores/libISSMCore_la-movingfront_core.lo
CXX cores/libISSMCore_la-groundingline_core.lo
CXX modules/GroundinglineMigrationx/libISSMCore_la-GroundinglineMigrationx.lo
CXX classes/Loads/libISSMCore_la-Riftfront.lo
CXX modules/ConstraintsStatex/libISSMCore_la-RiftConstraintsState.lo
CXX modules/ModelProcessorx/libISSMCore_la-CreateOutputDefinitions.lo
CXX modules/OutputDefinitionsResponsex/libISSMCore_la-OutputDefinitionsResponsex.lo
CXX modules/InterpFromMeshToMesh2dx/libISSMCore_la-InterpFromMeshToMesh2dx.lo
CXX classes/Inputs/libISSMCore_la-Inputs.lo
CXX classes/Inputs/libISSMCore_la-BoolInput.lo
CXX classes/Inputs/libISSMCore_la-DoubleInput.lo
CXX classes/Inputs/libISSMCore_la-IntInput.lo
CXX classes/Inputs/libISSMCore_la-ElementInput.lo
CXX classes/Inputs/libISSMCore_la-SegInput.lo
CXX classes/Inputs/libISSMCore_la-TriaInput.lo
CXX classes/Inputs/libISSMCore_la-PentaInput.lo
CXX classes/Inputs/libISSMCore_la-DatasetInput.lo
CXX classes/Inputs/libISSMCore_la-ControlInput.lo
CXX classes/Inputs/libISSMCore_la-TransientInput.lo
CXX classes/Inputs/libISSMCore_la-ArrayInput.lo
CXX toolkits/petsc/patches/libISSMCore_la-VecToMPISerial.lo
CXX toolkits/petsc/patches/libISSMCore_la-MatToSerial.lo
CXX toolkits/petsc/patches/libISSMCore_la-NewVec.lo
CXX toolkits/petsc/patches/libISSMCore_la-PetscOptionsDetermineSolverType.lo
CXX toolkits/petsc/patches/libISSMCore_la-NewMat.lo
CXX toolkits/petsc/patches/libISSMCore_la-VecFree.lo
CXX toolkits/petsc/patches/libISSMCore_la-KSPFree.lo
CXX toolkits/petsc/patches/libISSMCore_la-MatFree.lo
CXX toolkits/petsc/patches/libISSMCore_la-MatMultPatch.lo
CXX toolkits/petsc/patches/libISSMCore_la-ISSMToPetscMatrixType.lo
CXX toolkits/petsc/patches/libISSMCore_la-ISSMToPetscInsertMode.lo
CXX toolkits/petsc/patches/libISSMCore_la-ISSMToPetscNormMode.lo
CXX toolkits/petsc/objects/libISSMCore_la-PetscMat.lo
CXX toolkits/petsc/objects/libISSMCore_la-PetscVec.lo
CXX toolkits/petsc/objects/libISSMCore_la-PetscSolver.lo
CXX toolkits/mumps/libISSMCore_la-MumpsSolve.lo
CXX analyses/libISSMCore_la-AdjointBalancethicknessAnalysis.lo
CXX analyses/libISSMCore_la-AdjointBalancethickness2Analysis.lo
CXX analyses/libISSMCore_la-AdjointHorizAnalysis.lo
CXX analyses/libISSMCore_la-BalancethicknessAnalysis.lo
CXX analyses/libISSMCore_la-Balancethickness2Analysis.lo
CXX analyses/libISSMCore_la-BalancethicknessSoftAnalysis.lo
CXX analyses/libISSMCore_la-BalancevelocityAnalysis.lo
CXX analyses/libISSMCore_la-L2ProjectionBaseAnalysis.lo
CXX analyses/libISSMCore_la-DamageEvolutionAnalysis.lo
CXX modules/Damagex/libISSMCore_la-Damagex.lo
CXX analyses/libISSMCore_la-StressbalanceAnalysis.lo
CXX analyses/libISSMCore_la-UzawaPressureAnalysis.lo
CXX analyses/libISSMCore_la-StressbalanceSIAAnalysis.lo
CXX analyses/libISSMCore_la-StressbalanceVerticalAnalysis.lo
CXX analyses/libISSMCore_la-EnthalpyAnalysis.lo
CXX analyses/libISSMCore_la-GLheightadvectionAnalysis.lo
CXX analyses/libISSMCore_la-HydrologyShreveAnalysis.lo
CXX analyses/libISSMCore_la-HydrologyShaktiAnalysis.lo
CXX analyses/libISSMCore_la-HydrologyPismAnalysis.lo
CXX analyses/libISSMCore_la-HydrologyGlaDSAnalysis.lo
CXX analyses/libISSMCore_la-HydrologyDCInefficientAnalysis.lo
CXX analyses/libISSMCore_la-HydrologyDCEfficientAnalysis.lo
CXX analyses/libISSMCore_la-L2ProjectionEPLAnalysis.lo
CXX analyses/libISSMCore_la-MeltingAnalysis.lo
CXX analyses/libISSMCore_la-MasstransportAnalysis.lo
CXX analyses/libISSMCore_la-SmbAnalysis.lo
CXX analyses/libISSMCore_la-FreeSurfaceBaseAnalysis.lo
CXX analyses/libISSMCore_la-FreeSurfaceTopAnalysis.lo
CXX analyses/libISSMCore_la-ExtrudeFromBaseAnalysis.lo
CXX analyses/libISSMCore_la-ExtrudeFromTopAnalysis.lo
CXX analyses/libISSMCore_la-DepthAverageAnalysis.lo
CXX analyses/libISSMCore_la-ThermalAnalysis.lo
CXX analyses/libISSMCore_la-SmoothAnalysis.lo
CXX analyses/libISSMCore_la-LevelsetAnalysis.lo
CXX modules/Calvingx/libISSMCore_la-Calvingx.lo
CXX modules/KillIcebergsx/libISSMCore_la-KillIcebergsx.lo
CXX analyses/libISSMCore_la-ExtrapolationAnalysis.lo
CXX cores/libISSMCore_la-gia_core.lo
CXX analyses/libISSMCore_la-GiaAnalysis.lo
CXX modules/GiaDeflectionCorex/libISSMCore_la-GiaDeflectionCorex.lo
CXX cores/libISSMCore_la-love_core.lo
CXX analyses/libISSMCore_la-LoveAnalysis.lo
CXX modules/FourierLoveCorex/libISSMCore_la-FourierLoveCorex.lo
CXX cores/libISSMCore_la-esa_core.lo
CXX analyses/libISSMCore_la-EsaAnalysis.lo
CXX cores/libISSMCore_la-sealevelchange_core.lo
CXX analyses/libISSMCore_la-SealevelriseAnalysis.lo
CXX toolkits/metis/patches/libISSMCore_la-METIS_PartMeshNodalPatch.lo
CXX classes/kriging/libISSMCore_la-Observations.lo
CXX classes/kriging/libISSMCore_la-GaussianVariogram.lo
CXX classes/kriging/libISSMCore_la-ExponentialVariogram.lo
CXX classes/kriging/libISSMCore_la-SphericalVariogram.lo
CXX classes/kriging/libISSMCore_la-PowerVariogram.lo
CXX classes/kriging/libISSMCore_la-Quadtree.lo
CXX classes/kriging/libISSMCore_la-Covertree.lo
CXX classes/kriging/libISSMCore_la-Observation.lo
CXX modules/Krigingx/libISSMCore_la-pKrigingx.lo
CXXLD libISSMCore.la
*** Warning: Linking the shared library libISSMCore.la against the
*** static library /home/koitf1/trunk/externalpackages/m1qn3/install/libm1qn3.a is not portable!
*** Warning: Linking the shared library libISSMCore.la against the
*** static library /home/koitf1/trunk/externalpackages/m1qn3/install/libddot.a is not portable!
CXX shared/String/ApiPrintf.lo
CXXLD libISSMOverload.la
CXX shared/Threads/libISSMModules_la-LaunchThread.lo
CXX shared/Threads/libISSMModules_la-PartitionRange.lo
CXX shared/Exp/libISSMModules_la-exp.lo
CXX shared/Triangle/libISSMModules_la-GridInsideHole.lo
CXX shared/Triangle/libISSMModules_la-TriangleUtils.lo
CXX modules/Trianglex/libISSMModules_la-Trianglex.lo
CXX modules/ProcessRiftsx/libISSMModules_la-ProcessRiftsx.lo
CXX modules/PointCloudFindNeighborsx/libISSMModules_la-PointCloudFindNeighborsx.lo
CXX modules/PointCloudFindNeighborsx/libISSMModules_la-PointCloudFindNeighborsxt.lo
CXX modules/InterpFromGridToMeshx/libISSMModules_la-InterpFromGridToMeshx.lo
CXX modules/InterpFromMesh2dx/libISSMModules_la-InterpFromMesh2dx.lo
CXX modules/InterpFromMesh2dx/libISSMModules_la-InterpFromMesh2dxt.lo
CXX modules/InterpFromMeshToMesh3dx/libISSMModules_la-InterpFromMeshToMesh3dx.lo
CXX modules/InterpFromMeshToGridx/libISSMModules_la-InterpFromMeshToGridx.lo
CXX modules/MeshProfileIntersectionx/libISSMModules_la-MeshProfileIntersectionx.lo
CXX modules/ContourToMeshx/libISSMModules_la-ContourToMeshx.lo
CXX modules/ContourToMeshx/libISSMModules_la-ContourToMeshxt.lo
CXX modules/ExpToLevelSetx/libISSMModules_la-ExpToLevelSetx.lo
CXX modules/ExpToLevelSetx/libISSMModules_la-ExpToLevelSetxt.lo
CXX modules/ContourToNodesx/libISSMModules_la-ContourToNodesx.lo
CXX modules/DistanceToMaskBoundaryx/libISSMModules_la-DistanceToMaskBoundaryx.lo
CXX modules/DistanceToMaskBoundaryx/libISSMModules_la-DistanceToMaskBoundaryxt.lo
CXX modules/NodeConnectivityx/libISSMModules_la-NodeConnectivityx.lo
CXX modules/ElementConnectivityx/libISSMModules_la-ElementConnectivityx.lo
CXX modules/PropagateFlagsFromConnectivityx/libISSMModules_la-PropagateFlagsFromConnectivityx.lo
CXX modules/Chacox/libISSMModules_la-Chacox.lo
CXX modules/Chacox/libISSMModules_la-input_parse.lo
CXX modules/Chacox/libISSMModules_la-user_params.lo
CXX modules/Krigingx/libISSMModules_la-Krigingx.lo
CXX modules/Krigingx/libISSMModules_la-pKrigingx.lo
CXXLD libISSMModules.la
CXXLD issm.exe
CXX main/issm_slr-issm_slr.o
CXXLD issm_slr.exe
CXX main/kriging-kriging.o
CXXLD kriging.exe
make[3]: Leaving directory '/home/koitf1/trunk/src/c'
Making all in m
make[3]: Entering directory '/home/koitf1/trunk/src/m'
make[3]: *** No rule to make target '/src/m/archive/*.m', needed by 'all-am'. Stop.
make[3]: Leaving directory '/home/koitf1/trunk/src/m'
make[2]: *** [Makefile:463: all-recursive] Error 1
make[2]: Leaving directory '/home/koitf1/trunk/src'
make[1]: *** [Makefile:584: all-recursive] Error 1
make[1]: Leaving directory '/home/koitf1/trunk'
make: *** [Makefile:481: all] Error 2
[sudo] password for koitf1:
Making install in src
make[1]: Entering directory '/home/koitf1/trunk/src'
Making install in c
make[2]: Entering directory '/home/koitf1/trunk/src/c'
CXXLD issm.exe
CXXLD issm_slr.exe
CXXLD kriging.exe
make[3]: Entering directory '/home/koitf1/trunk/src/c'
CXXLD issm.exe
CXXLD issm_slr.exe
CXXLD kriging.exe
/usr/bin/mkdir -p '/lib'
/bin/bash ../../libtool --mode=install /usr/bin/install -c libISSMCore.la libISSMOverload.la libISSMModules.la '/lib'
libtool: install: /usr/bin/install -c .libs/libISSMCore.so.0.0.0 /lib/libISSMCore.so.0.0.0
libtool: install: (cd /lib && { ln -s -f libISSMCore.so.0.0.0 libISSMCore.so.0 { rm -f libISSMCore.so.0 && ln -s libISSMCore.so.0.0.0 libISSMCore.so.0; }; })
libtool: install: (cd /lib && { ln -s -f libISSMCore.so.0.0.0 libISSMCore.so { rm -f libISSMCore.so && ln -s libISSMCore.so.0.0.0 libISSMCore.so; }; })
libtool: install: /usr/bin/install -c .libs/libISSMCore.lai /lib/libISSMCore.la
libtool: install: /usr/bin/install -c .libs/libISSMOverload.so.0.0.0 /lib/libISSMOverload.so.0.0.0
libtool: install: (cd /lib && { ln -s -f libISSMOverload.so.0.0.0 libISSMOverload.so.0 { rm -f libISSMOverload.so.0 && ln -s libISSMOverload.so.0.0.0 libISSMOverload.so.0; }; })
libtool: install: (cd /lib && { ln -s -f libISSMOverload.so.0.0.0 libISSMOverload.so { rm -f libISSMOverload.so && ln -s libISSMOverload.so.0.0.0 libISSMOverload.so; }; })
libtool: install: /usr/bin/install -c .libs/libISSMOverload.lai /lib/libISSMOverload.la
libtool: warning: relinking 'libISSMModules.la'
libtool: install: (cd /home/koitf1/trunk/src/c; /bin/bash "/home/koitf1/trunk/libtool" --silent --tag CXX --mode=relink g++ -g -O2 -g -O2 -fPIC -std=c++11 -g -O2 -o libISSMModules.la -rpath /lib ./shared/Threads/libISSMModules_la-LaunchThread.lo ./shared/Threads/libISSMModules_la-PartitionRange.lo ./shared/Exp/libISSMModules_la-exp.lo ./shared/Triangle/libISSMModules_la-AssociateSegmentToElement.lo ./shared/Triangle/libISSMModules_la-GridInsideHole.lo ./shared/Triangle/libISSMModules_la-OrderSegments.lo ./shared/Triangle/libISSMModules_la-SplitMeshForRifts.lo ./shared/Triangle/libISSMModules_la-TriangleUtils.lo ./modules/Trianglex/libISSMModules_la-Trianglex.lo ./modules/ProcessRiftsx/libISSMModules_la-ProcessRiftsx.lo ./modules/PointCloudFindNeighborsx/libISSMModules_la-PointCloudFindNeighborsx.lo ./modules/PointCloudFindNeighborsx/libISSMModules_la-PointCloudFindNeighborsxt.lo ./modules/InterpFromGridToMeshx/libISSMModules_la-InterpFromGridToMeshx.lo ./modules/InterpFromMesh2dx/libISSMModules_la-InterpFromMesh2dx.lo ./modules/InterpFromMesh2dx/libISSMModules_la-InterpFromMesh2dxt.lo ./modules/InterpFromMeshToMesh3dx/libISSMModules_la-InterpFromMeshToMesh3dx.lo ./modules/InterpFromMeshToGridx/libISSMModules_la-InterpFromMeshToGridx.lo ./modules/MeshProfileIntersectionx/libISSMModules_la-MeshProfileIntersectionx.lo ./modules/ContourToMeshx/libISSMModules_la-ContourToMeshx.lo ./modules/ContourToMeshx/libISSMModules_la-ContourToMeshxt.lo ./modules/ExpToLevelSetx/libISSMModules_la-ExpToLevelSetx.lo ./modules/ExpToLevelSetx/libISSMModules_la-ExpToLevelSetxt.lo ./modules/ContourToNodesx/libISSMModules_la-ContourToNodesx.lo ./modules/DistanceToMaskBoundaryx/libISSMModules_la-DistanceToMaskBoundaryx.lo ./modules/DistanceToMaskBoundaryx/libISSMModules_la-DistanceToMaskBoundaryxt.lo ./modules/NodeConnectivityx/libISSMModules_la-NodeConnectivityx.lo ./modules/ElementConnectivityx/libISSMModules_la-ElementConnectivityx.lo ./modules/PropagateFlagsFromConnectivityx/libISSMModules_la-PropagateFlagsFromConnectivityx.lo ./modules/Chacox/libISSMModules_la-Chacox.lo ./modules/Chacox/libISSMModules_la-input_parse.lo ./modules/Chacox/libISSMModules_la-chaco_seconds.lo ./modules/Chacox/libISSMModules_la-user_params.lo ./modules/Krigingx/libISSMModules_la-Krigingx.lo ./modules/Krigingx/libISSMModules_la-pKrigingx.lo ./libISSMCore.la -L/home/koitf1/trunk/externalpackages/triangle/install/lib -ltriangle -L/home/koitf1/trunk/externalpackages/chaco/install/lib -lchacominusblas )
libtool: install: /usr/bin/install -c .libs/libISSMModules.so.0.0.0T /lib/libISSMModules.so.0.0.0
libtool: install: (cd /lib && { ln -s -f libISSMModules.so.0.0.0 libISSMModules.so.0 { rm -f libISSMModules.so.0 && ln -s libISSMModules.so.0.0.0 libISSMModules.so.0; }; })
libtool: install: (cd /lib && { ln -s -f libISSMModules.so.0.0.0 libISSMModules.so { rm -f libISSMModules.so && ln -s libISSMModules.so.0.0.0 libISSMModules.so; }; })
libtool: install: /usr/bin/install -c .libs/libISSMModules.lai /lib/libISSMModules.la
libtool: install: /usr/bin/install -c .libs/libISSMCore.a /lib/libISSMCore.a
libtool: install: chmod 644 /lib/libISSMCore.a
libtool: install: ranlib /lib/libISSMCore.a
libtool: install: /usr/bin/install -c .libs/libISSMOverload.a /lib/libISSMOverload.a
libtool: install: chmod 644 /lib/libISSMOverload.a
libtool: install: ranlib /lib/libISSMOverload.a
libtool: install: /usr/bin/install -c .libs/libISSMModules.a /lib/libISSMModules.a
libtool: install: chmod 644 /lib/libISSMModules.a
libtool: install: ranlib /lib/libISSMModules.a
libtool: finish: PATH="/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin:/sbin" ldconfig -n /lib
Libraries have been installed in:
/lib
If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the '-LLIBDIR'
flag during linking and do at least one of the following:
- add LIBDIR to the 'LD_LIBRARY_PATH' environment variable
during execution
- add LIBDIR to the 'LD_RUN_PATH' environment variable
during linking
- use the '-Wl,-rpath -Wl,LIBDIR' linker flag
- have your system administrator add LIBDIR to '/etc/ld.so.conf'
See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
/usr/bin/mkdir -p '/bin'
/bin/bash ../../libtool --mode=install /usr/bin/install -c issm.exe issm_slr.exe kriging.exe '/bin'
libtool: install: /usr/bin/install -c .libs/issm.exe /bin/issm.exe
libtool: install: /usr/bin/install -c .libs/issm_slr.exe /bin/issm_slr.exe
libtool: install: /usr/bin/install -c .libs/kriging.exe /bin/kriging.exe
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/home/koitf1/trunk/src/c'
make[2]: Leaving directory '/home/koitf1/trunk/src/c'
Making install in m
make[2]: Entering directory '/home/koitf1/trunk/src/m'
make[2]: *** No rule to make target '/src/m/archive/*.m', needed by 'all-am'. Stop.
make[2]: Leaving directory '/home/koitf1/trunk/src/m'
make[1]: *** [Makefile:463: install-recursive] Error 1
make[1]: Leaving directory '/home/koitf1/trunk/src'
make: *** [Makefile:584: install-recursive] Error 1