Changes between Version 4 and Version 5 of vilje

Timestamp:

11/25/16 07:06:07 (8 years ago)

Author:

bdef

Comment:

--

vilje

@@ -58 +58 @@
 export ISSM_DIR=PATHTOTRUNK
 #
-module load intelcomp/13.0.1 mpt/2.06 petsc/3.4.1d
-module load parmetis/4.0.2 mumps/4.10.0
+module load intelcomp/17.0.0 mpt/2.14 petsc/3.7.4d
+module load parmetis/4.0.3 mumps/5.0.2
 module load automake
 }}}
@@ -67 +67 @@
 == Installing ISSM on Vilje ==
 
-run libtoolize
+If it is the first time you are installing issm on Vilje you will need to run libtoolize:
+{{{
+libtoolize
+}}}
 
-run ./scripts/automakerrerun
+The only package from external packages that you may require (if you need to run some inversion) is m1qn3. Install it as usual and source you environment file
+{{{
+cd externalpackages/m1qn3
+./install.sh
+source ../../etc/environment.sh
+}}}
 
-You can check out ISSM and install m1qn3. This is the only package we will install, the module loaded from your bashrc are taking care of the rest.
+Once this is done in ISSM_DIR do:
+{{{
+run ./scripts/automakererun.sh
+}}}
 
 Use the following configuration script (adapt to your needs):
 
 {{{
-#!/bin/sh                                                                                                                                                       
+#!/bin/sh
 ./configure \
     --prefix=$ISSM_DIR \
     --without-kriging \
     --with-wrappers=no \
-    --with-petsc-dir="/sw/sdev/Modules/petsc/petsc-3.4.1" \
-    --with-mpi-include="/sw/sgi/mpt/mpt-2.06/include/"  \
-    --with-mpi-libflags="-L/sw/sgi/mpt/mpt-2.06/lib -lmpi -lmpi++" \
-    --with-metis-dir="/sw/sdev/Modules/parmetis/parmetis-4.0.2/include" \
-    --with-mumps-dir="/sw/sdev/Modules/mumps/mumps-4.10.0" \
+    --with-petsc-dir="/sw/sdev/Modules/petsc/petsc-3.7.4" \
+    --with-mpi-include="/sw/sgi/mpt/mpt-2.14/include/"  \
+    --with-mpi-libflags="-L/sw/sgi/mpt/mpt-2.14/lib -lmpi -lmpi++" \
+    --with-metis-dir="/sw/sdev/Modules/parmetis/parmetis-4.0.3/include" \
+    --with-mumps-dir="/sw/sdev/Modules/mumps/mumps-5.0.2" \
     --with-cxxoptflags="-O2 -xAVX" \
     --with-m1qn3-dir="$ISSM_DIR/externalpackages/m1qn3/install" \
@@ -96 +107 @@
 }}}
 
+You can then make your configuration file executable (if it is not already) execute it and install ISSM:
+{{{
+chmod +x configure.sh
+./configure
+make install
+}}}
+
 == vilje_settings.py ==
+
 {{{
 def vilje_settings(md):                                                                                                                     
@@ -110 +129 @@
 == vilje_settings.m ==
 
-The use of the Python version of the code is encouraged at Uib but you are welcom to clone the python settings.
+The use of the Python version of the code is encouraged at Uib but you are welcome to clone the python settings.