Changes between Initial Version and Version 1 of vilje

Timestamp:

09/28/16 02:28:55 (9 years ago)

Author:

bdef

Comment:

--

vilje

@@ +1 @@
+== Getting an account ==
+
+First, you need to get an account from NOTUR, the webpage for you request is : https://www.metacenter.no/user/application/form/notur/.
+
+== ssh configuration ==
+
+You can add the following lines to `~/.ssh/config` on your local machine:
+{{{
+#!sh
+Host vilje vilje.hpc.ntnu.no
+    HostName vilje.hpc.ntnu.no
+    User YOURVILJEUSERNAME
+}}}
+and replace `YOURVILJEUSERNAME` by your vilje username.
+
+Once this is done, you can ssh vilje by simply doing:
+
+{{{
+#!sh
+ssh vilje
+}}}
+
+== Password-less ssh ==
+
+Once you have the account, you can setup a public key authentification in order to avoid having to input your password for each run. 
+You need to have a SSH public/private key pair. If you do not, you can create a SSH public/private key pair by typing the following command and following the prompts (no passphrase necessary):
+{{{
+#!sh
+$your_localhost% ssh-keygen -t rsa
+Generating public/private rsa key pair.
+Enter file in which to save the key (/Users/username/.ssh/id_rsa):RETURN
+Enter passphrase (empty for no passphrase):RETURN
+Enter same passphrase again:RETURN
+Your identification has been saved in /Users/username/.ssh/id_rsa.
+Your public key has been saved in /Users/username/.ssh/id_rsa.pub.
+}}}
+
+Two files were created: your private key `/Users/username/.ssh/id_rsa`, and the public key `/Users/username/.ssh/id_rsa.pub`. The private key is read-only and only for you, it is used to decrypt all correspondence encrypted with the public key. The contents of the public key need to be copied to `~/.ssh/authorized_keys` on your vilje account:
+
+{{{
+#!sh
+$your_localhost%scp ~/.ssh/id_rsa.pub username@your_remosthost:~
+}}}
+
+Now on '''Vilje''', copy the content of id_rsa.pub:
+
+{{{
+#!sh
+$your_remosthost%cat ~/id_rsa.pub >> ~/.ssh/authorized_keys
+$your_remosthost%rm ~/id_rsa.pub
+}}}
+
+== Environment ==
+
+On Vilje, add the following lines to `~/.bashrc`:
+{{{
+#!sh
+export ISSM_DIR=PATHTOTRUNK
+#
+module load intelcomp/13.0.1 mpt/2.06 petsc/3.4.1d
+module load parmetis/4.0.2 mumps/4.10.0
+module load automake
+}}}
+
+''Log out and log back in'' to apply this change.
+
+== Installing ISSM on Vilje ==
+
+You can check out ISSM and install m1qn3. This is the only package we will install, the module loaded from your bashrc are taking care of the rest.
+
+Use the following configuration script (adapt to your needs):
+
+{{{
+#!/bin/sh                                                                                                                                                       
+./configure \
+    --prefix=$ISSM_DIR \
+    --without-kriging \
+    --with-wrappers=no \
+    --with-petsc-dir="/sw/sdev/Modules/petsc/petsc-3.4.1" \
+    --with-mpi-include="/sw/sgi/mpt/mpt-2.06/include/"  \
+    --with-mpi-libflags="-L/sw/sgi/mpt/mpt-2.06/lib -lmpi -lmpi++" \
+    --with-metis-dir="/sw/sdev/Modules/parmetis/parmetis-4.0.2/include" \
+    --with-mumps-dir="/sw/sdev/Modules/mumps/mumps-4.10.0" \
+    --with-cxxoptflags="-O2 -xAVX" \
+    --with-m1qn3-dir="$ISSM_DIR/externalpackages/m1qn3/install" \
+    --enable-development
+}}}
+
+== hexagon_settings.m ==
+
+TO BE DONE function of hexagon.py