Changes between Version 57 and Version 58 of pleiadesbash

Timestamp:

01/09/25 20:37:04 (3 weeks ago)

Author:

jdquinn

Comment:

--

pleiadesbash

@@ -144 +144 @@
 
 Then, build the following external packages:
- - zlib, install-1.sh
- - hdf5, install-1-parallel.sh
- - gsl, install-pleiades.sh
- - boost, install-1.55-pleiades.sh
- - dakota, install-6.2-pleiades.sh
- - curl, install-7-linux.sh
- - netcdf, install-4.7-parallel.sh
- - sqlite, install.sh
- - proj, install-6.sh
- - gdal, install-3.sh
- - gshhg, install.sh
- - gmt, install-6-linux.sh
- - gmsh, install-4.sh
+{{{
+zlib            install-1.sh
+hdf5            install-1.sh
+gsl                     install-pleiades.sh
+boost           install-1.7-linux.sh
+dakota          install-6.2-pleiades.sh
+chaco           install-linux.sh
+curl            install-7-linux.sh
+netcdf          install-4.sh
+sqlite          install.sh
+proj            install-6.sh
+gdal            install-3-linux.sh
+gshhg           install.sh
+gmt                     install-6-pleiades.sh
+gmsh            install-4-pleiades.sh
+triangle        install-linux.sh
+m1qn3           install-linux.sh
+semic           install.sh
+}}}
 
 Finally, you will need to use the following configuration script (i.e. adding the "with" lines for the needed packages):
@@ -162 +168 @@
 {{{
 #!sh
+
+export CFLAGS="-O3"
+export CXXFLAGS="-O3 -std=c++11"
+
 ./configure \
---prefix=$ISSM_DIR \
+--prefix="${ISSM_DIR}" \
 --enable-development \
 --enable-standalone-libraries \
 --with-wrappers=no \
---with-vendor="intel-pleiades-mpi" \
---with-cxxoptflags="-O3 " \
---with-petsc-dir="${ISSM_DIR}/externalpackages/petsc/install" \
---with-m1qn3-dir="${ISSM_DIR}/externalpackages/m1qn3/install" \
+--with-graphics-lib="/usr/lib64/libX11.so" \
+--with-fortran-lib="-L${COMP_INTEL_ROOT}/compiler/lib/intel64_lin -lifcore -lifport -lgfortran" \
+--with-mkl-libflags="-L${COMP_INTEL_ROOT}/mkl/lib/intel64 -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread -lm" \
+--with-mpi-include="/nasa/hpe/mpt/2.30_rhel810/include" \
+--with-mpi-libflags="-L/nasa/hpe/mpt/2.30_rhel810/lib -lmpi" \
+--with-blas-lapack-lib="-L${COMP_INTEL_ROOT}/mkl/lib/intel64 -lmkl_blas95_lp64 -lmkl_lapack95_lp64" \
+--with-metis-dir="${PETSC_DIR}" \
+--with-parmetis-dir="${PETSC_DIR}" \
+--with-scalapack-lib="-L${COMP_INTEL_ROOT}/mkl/lib/intel64/libmkl_scalapack_lp64.so" \
+--with-mumps-dir="${PETSC_DIR}" \
+--with-hdf5-dir="${ISSM_DIR}/externalpackages/hdf5/install" \
+--with-petsc-dir="${PETSC_DIR}" \
+--with-gsl-dir="${ISSM_DIR}/externalpackages/gsl/install" \
 --with-boost-dir="${ISSM_DIR}/externalpackages/boost/install" \
 --with-dakota-dir="${ISSM_DIR}/externalpackages/dakota/install" \
---with-gsl-dir=${ISSM_DIR}/externalpackages/gsl/install \
---with-mpi-include=" " \
---with-mpi-libflags=" -lmpi" \
---with-mkl-libflags="-L/nasa/intel/Compiler/2018.3.222/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64 -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread -lm" \
---with-metis-dir="${ISSM_DIR}/externalpackages/petsc/install" \
---with-parmetis-dir=${ISSM_DIR}/externalpackages/petsc/install \
---with-mumps-dir="${ISSM_DIR}/externalpackages/petsc/install" \
---with-scalapack-lib="-L/nasa/intel/Compiler/2018.3.222/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so" \
---with-graphics-lib="/usr/lib64/libX11.so" \
---with-fortran-lib="-L/nasa/intel/Compiler/2018.3.222/compilers_and_libraries_2018.3.222/linux/compiler/lib/intel64_lin/ -lifcore -lifport -lgfortran" \
+--with-chaco-dir="${ISSM_DIR}/externalpackages/chaco/install" \
+--with-proj-dir="${ISSM_DIR}/externalpackages/proj/install" \
+--with-triangle-dir="${ISSM_DIR}/externalpackages/triangle/install" \
+--with-m1qn3-dir="${ISSM_DIR}/externalpackages/m1qn3/install" \
+--with-semic-dir="${ISSM_DIR}/externalpackages/semic/install" \
 }}}