Changes between Version 49 and Version 50 of pleiadesbash

Timestamp:

07/05/24 03:05:08 (10 months ago)

Author:

Mathieu Morlighem

Comment:

--

pleiadesbash

@@ -20 +20 @@
 == Environment ==
 
-Since you will be using `bash`, add the following to your `~/.bashrc`:
+Make sure to clone ISSM in your `/nobackup/` directory, where you can save a lot more files than in your home directory.
+
+Add the following to your `~/.bashrc`:
 {{{
 #ISSM
@@ -40 +42 @@
 }}}
 
-And replace `ISSM_DIR` with your actual trunk. ''Log out and log back in'' to apply this change.
-
-Note that if your `bashrc` is not loaded when you logging, you will have to add a new file: `~/.bash_login` with the following content:
+And replace `ISSM_DIR` with your actual trunk. Log out and log back in to apply this change.
+
+Note that if your `.bashrc` is not loaded when you logging, you will have to add a new file: `~/.bash_login` with the following content:
 {{{
 if [ -f ~/.bashrc ]; then . ~/.bashrc; fi
@@ -50 +52 @@
 
 '''Do NOT install mpich'''. We have to use the one provided by NAS. Pleiades will ''only'' be used to run the code, you will use your local machine for pre- and post- processing, you will never use Pleiades' copy of MATLAB. You can check out ISSM and install the following packages:
- - m1qn3
- - that's it because we now use Pleiades' PETSc
+ - m1qn3 (`./install-linux.sh`)
+ - that's it because we now use Pleiades' PETSc!
 
 For documentation on the Pleiades cluster, see here: http://www.nas.nasa.gov/hecc/support/kb/
@@ -65 +67 @@
 
 {{{
+#!sh
 export CXXFLAGS="-g -Ofast"
 export CFLAGS="-g -Ofast"
+
 ./configure \
    --prefix=$ISSM_DIR \
@@ -104 +108 @@
 
 {{{
-#/
+#!sh
 ./configure \
  --prefix=$ISSM_DIR \
@@ -200 +204 @@
 
 {{{
-#!bashsh
+#!bash
 ./configure \
  --prefix=$ISSM_DIR \
@@ -221 +225 @@
  --enable-tape-alloc \
  --enable-development
-
-#NOTE: The following is the old flag list, which does not work with the mpi compiler
-#--with-cxxoptflags="-g -O3 -diag-disable=2196 -axCORE-AVX2,AVX -xSSE4.2 " \
 }}}