Changes between Version 45 and Version 46 of pleiadesbash

Timestamp:

04/30/24 12:19:54 (12 months ago)

Author:

Mathieu Morlighem

Comment:

--

pleiadesbash

@@ -23 +23 @@
 {{{
 #ISSM
-export ISSM_DIR="/u/jbondzio/ISSM/trunk-jpl"
+export ISSM_DIR="/u/username/trunk-jpl"
 source $ISSM_DIR/etc/environment.sh
 
 #Packages
-module load comp-intel/2018.3.222
-module load /nasa/intel/impi/2021.3/modulefiles/mpi/2021.3.0
+module load mpi-hpe/mpt
+module load comp-intel
+module load petsc/3.17.3_intel_mpt_py
 
 #Set compilers
@@ -34 +35 @@
 export CXX="mpicxx"
 export F77="mpif77"
-
 }}}
 
@@ -43 +43 @@
 '''Do NOT install mpich'''. We have to use the one provided by NAS. Pleiades will ''only'' be used to run the code, you will use your local machine for pre- and post- processing, you will never use Pleiades' copy of MATLAB. You can check out ISSM and install the following packages:
  - m1qn3
- - PETSc (use `install-3.17-pleiades.sh` or newer)
+ - that's it because we now use Pleiades' PETSc
 
 For documentation on the Pleiades cluster, see here: http://www.nas.nasa.gov/hecc/support/kb/
@@ -57 +57 @@
 
 {{{
-#!sh
-./configure \
- --prefix=$ISSM_DIR \
- --enable-standalone-libraries \
- --with-wrappers=no \
- --with-m1qn3-dir=$ISSM_DIR/externalpackages/m1qn3/install \
- --with-metis-dir=$ISSM_DIR/externalpackages/petsc/install \
- --with-petsc-dir=$ISSM_DIR/externalpackages/petsc/install \
- --with-scalapack-lib="-L/nasa/intel/Compiler/2018.3.222/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64/libmkl_scalapack_lp64.so" \
- --with-mpi-include=" " \
- --with-mpi-libflags=" -lmpi" \
- --with-mkl-libflags="-L/nasa/intel/Compiler/2018.3.222/compilers_and_libraries_2018.3.222/linux/mkl/lib/intel64 -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread -lm" \
- --with-mumps-dir=$ISSM_DIR/externalpackages/petsc/install \
- --with-fortran-lib="-L/nasa/intel/Compiler/2018.3.222/compilers_and_libraries_2018.3.222/linux/compiler/lib/intel64_lin/ -lifcore -lifport -lgfortran" \
- --with-cxxoptflags="-O3 " \
- --with-vendor="intel-pleiades-mpi" \
- --enable-development
+export CXXFLAGS="-g -Ofast"
+export CFLAGS="-g -Ofast"
+./configure \
+   --prefix=$ISSM_DIR \
+   --with-wrappers=yes \
+   --with-matlab-dir="/nasa/matlab/2022b/" \
+   --with-mpi-include="-I${MPI_ROOT}/include " \
+   --with-mpi-libflags="-L${MPI_ROOT}/lib -lmpi" \
+   --with-petsc-dir=${PETSC_DIR} \
+   --with-parmetis-dir=${PETSC_DIR} \
+   --with-metis-dir=${PETSC_DIR} \
+   --with-mumps-dir=${PETSC_DIR} \
+   --with-mkl-libflags="-L${MKLROOT}/lib/intel64 -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread -lm" \
+   --with-m1qn3-dir="${ISSM_DIR}/externalpackages/m1qn3/install" \
+    --with-fortran-lib="-L${MKLROOT}/../compiler/lib/intel64_lin -lifcore -lifport -lgfortran" \
+   --with-cxxoptflags="-g -Ofast -axCORE-AVX2,AVX -xSSE4.2" \
+   --enable-development
 }}}