Changes between Version 40 and Version 41 of pleiadesbash

Timestamp:

05/18/23 17:10:26 (2 years ago)

Author:

schlegel

Comment:

--

pleiadesbash

@@ -26 +26 @@
 
 #Packages
-module load pkgsrc/2020Q4
 module load comp-intel/2018.3.222
-module load mpi-intel/2018.3.222
+module load /nasa/intel/impi/2021.3/modulefiles/mpi/2021.3.0
 
 #Set compilers
@@ -43 +42 @@
 '''Do NOT install mpich'''. We have to use the one provided by NAS. Pleiades will ''only'' be used to run the code, you will use your local machine for pre- and post- processing, you will never use Pleiades' copy of MATLAB. You can check out ISSM and install the following packages:
  - m1qn3
- - PETSc (use `install-3.14-pleiades.sh` or newer)
+ - PETSc (use `install-3.17-pleiades.sh` or newer)
 
 For documentation on the Pleiades cluster, see here: http://www.nas.nasa.gov/hecc/support/kb/
@@ -80 +79 @@
 You will not need to remake PETSc and m1qn3, as long as you made them using the Intel MPI libraries and compilers, as described above.
 
-In `~/.bashrc`, change your loaded packages to remove pkgsrc (it loads an incompatible copy of Boost and needs to be removed in order to build Dakota):
-
-{{{
-#Packages
-module load comp-intel/2018.3.222
-module load mpi-intel/2018.3.222
+Dakota will require that you have a python that is of version python2. The easiest way to do this is to define an alias for python that calls `/usr/bin/python2` in your `~/.bashrc`:
+
+{{{
+alias python="/usr/bin/python2"
 }}}
 
@@ -124 +121 @@
 }}}
 
-Note, if you would like the capabilities of pkgsrc/2020Q4, including updated svn, make sure that you build dakota without that package loaded.  Once you have ISSM compiled and installed with dakota, feel free to add back in to your `~/.bashrc`:
-
-{{{
-#Packages
-module load pkgsrc/2020Q4
-}}}
+Note, if you would like to use the python 3 version that loads in the environment, you will need to call `python3` to do so, as long as the python alias is set to python2.
 
 NOTE: Refer to jenkins/pleiades-dakota for external packages and configuration updates that may not yet be listed here.
@@ -137 +129 @@
 The required external packages and configuration of ISSM with Solid Earth capabilities is similar to building ISSM with Dakota. You will not need to remake PETSc and m1qn3, as long as you made them using the Intel MPI libraries and compilers, as described above. 
 
-In `~/.bashrc`, change your loaded packages to remove pkgsrc (it loads an incompatible copy of Boost and needs to be removed in order to build Dakota):
-
-{{{
-#Packages
-module load comp-intel/2018.3.222
-module load mpi-intel/2018.3.222
-}}}
-
-Then, ''log out and log back in'' and build the following external packages:
+Then, build the following external packages:
  - zlib, install-1.sh
  - hdf5, install-1-parallel.sh
@@ -160 +144 @@
  - gmsh, install-4.sh
 
-Finally, you will need to use the following configuration script (i.e. adding the "with" lines for Dakota and Boost):
+Finally, you will need to use the following configuration script (i.e. adding the "with" lines for the needed packages):
 
 {{{
@@ -254 +238 @@
 use your username for the `login` and enter your code path and execution path. Be sure to create the final execution directory (mkdir) within the nobackup folder. These settings will be picked up automatically by matlab when you do `md.cluster=pfe()`. 
 
-Make sure your module list includes scicon/app-tools, comp-intel/2018.3.222, and mpi-intel/2018.3.222. You can specify your own list of modules by adding to `pfe_settings.m`, for example:
-
-{{{
-cluster.modules = {'comp-intel/2018.3.222' 'mpi-intel/2018.3.222' 'scicon/app-tools'};
+Make sure your module list includes scicon/app-tools, comp-intel/2018.3.222, and /nasa/intel/impi/2021.3/modulefiles/mpi/2021.3.0. You can specify your own list of modules by adding to `pfe_settings.m`, for example:
+
+{{{
+cluster.modules = {'comp-intel/2018.3.222' '/nasa/intel/impi/2021.3/modulefiles/mpi/2021.3.0' 'scicon/app-tools'};
 }}}