Changes between Version 4 and Version 5 of pace


Ignore:
Timestamp:
01/13/21 08:39:08 (4 years ago)
Author:
arobel
Comment:

--

Legend:

Unmodified
Added
Removed
Modified

  • pace

    v4 v5  
    66
    77
    8 How to run ISSM using the standard module on PACE (ISSM 4.16 as of 1-7-2021)
    9 
    108ISSM has been built on the PACE cluster at CODA as a module. This means that it is already "installed" and can be used by any PACE user without needing to configure anything (except what is needed for the specific simulation). A user with privileges in the eas-robel group can follow these directions:
    119
    1210To run ISSM from the standard install on PACE requires a batch script, the MATLAB ISSM run script, and any input files that ISSM requires.
    1311
    14 1. In the Ice & Climate group shared directory, there is a test script including the correct input files and batch file that can be copied (PLEASE DON'T MIDFY THIS IN THE SHARED DIRECTORY) to your personal directory and run to learn how ISSM is run.
     121. In the Ice & Climate group shared directory, there is a test script including the correct input files and batch file that can be copied (PLEASE DON'T MODIFY THIS IN THE SHARED DIRECTORY) to your personal directory and run to learn how ISSM is run.
    1513
    1614(a) To copy these files to your home directory, run the following commands:
    … …  
    6058For more details on how to specify jobs on the PACE phoenix cluster see here: http://docs.pace.gatech.edu/phoenix_cluster/submit_jobs_phnx/
    6159
     60== Compiling ISSM from source locally on PACE ==
     61
     62
     63If the standard module install of ISSM on PACE is not sufficient for your needs (e.g. you need a different version of ISSM, or you need to modify the source code), then ISSM can also be built locally. The following instructions use some of the built in packages within the ISSM source, in addition to some of the existing modules on PACE to build ISSM locally. These instructions are current as of Jan. 13, 2021.
     64
     651. First, you must download or provide your own version of the source code in you local directory on PACE. You can do this using SVN run through a batch script, or simply by downloading the ISSM source to your personal machine (using the directions here: https://issm.jpl.nasa.gov/download/). In the Ice & Climate group shared directory, there is a build script (build-with-mvapich.sh), written by Dr. Fang Liu at PACE (who is the expert on all things related to ISSM builds on PACE) which can be used to build ISSM locally. Navigate into the "trunk" directory of the source code, then copy this build script from the shared directory:
     66
     67cp /storage/coda1/p-arobel3/0/shared/ISSM/ISSMsrc/build-with-mvapich.sh .[[BR]]
     68
     692. The build script is organized into "batches". To build the packages and source code in the correct order, simply go through the build script and uncomment one batch at a time and then run the script (using the command ./build-with-mvapich.sh after uncommenting each batch individually).
     70
     713. If you are modifying source code and have previously built ISSM locally successfully, you should only need to run batch 6 which simply compiles the source code (and doesn't recompile all the dependencies).
     72
     73
     74
     75