Changes between Version 1 and Version 2 of pace


Ignore:
Timestamp:
01/13/21 08:04:42 (4 years ago)
Author:
arobel
Comment:

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  • pace

    v1 v2  
    3131(d) An output text file should be created in the same directory as the batch file. You can have a quick look at the status of the run (which ISSM should output) using vi or less.
    3232
    33 2. For other non-test ISSM runs, the batch script should generally look like:
     332. For other non-test ISSM runs, the batch script should generally look like:<br />
    3434------
    35 #PBS -N JOBNAME
    36 #PBS -A GT-arobel3-atlas
    37 #PBS -o output.$PBS_JOBID
    38 #PBS -j oe
    39 #PBS -l nodes=NNODES:ppn=NPROC
    40 #PBS -l walltime=DAYS:HOURS:MINS:00
    41 
    42 cd $PBS_O_WORKDIR
    43 module purge
    44 module load intel/19.0.3
    45 module load issm/4.16
    46 source $ISSMROOT/etc/environment.sh
    47 
    48 matlab -nodesktop -nosplash -r "NAMEOFSCRIPT; exit"
     35#PBS -N JOBNAME <br />
     36#PBS -A GT-arobel3-atlas<br />
     37#PBS -o output.$PBS_JOBID<br />
     38#PBS -j oe<br />
     39#PBS -l nodes=NNODES:ppn=NPROC<br />
     40#PBS -l walltime=DAYS:HOURS:MINS:00<br />
     41<br />
     42cd $PBS_O_WORKDIR<br />
     43module purge<br />
     44module load intel/19.0.3<br />
     45module load issm/4.16<br />
     46source $ISSMROOT/etc/environment.sh<br />
     47<br />
     48matlab -nodesktop -nosplash -r "NAMEOFSCRIPT; exit"<br />
    4949------
    50 In this script, the only things that should be changed are lines 1, 5, 6, 14.
    51 
    52 (Line 1) JOBNAME is just the name of the job you pick (whatever you like) in the scheduler system.
    53 
    54 (Line 5) NNODES indicates the number of nodes and NPROC indicates the number of processors on each node to use. For very simple jobs, both can be 1. For more intensive jobs NNODES=1 and NPROC can be up to 28 (on the typical node architecture of phoenix). For very computationally intensive jobs, you can use more than one node, but talk to Alex first.
    55 
    56 (Line 6) The maximum time to allocate for the job is specified here in units of DAYS:HOURS:MINS:00. The phoenix cluster has a maximum walltime of 21 days.
    57 
    58 (Line 14) NAMEOFSCRIPT is the file name of the MATLAB script that you are using to run ISSM.
    59 
     50In this script, the only things that should be changed are lines 1, 5, 6, 14.<br />
     51<br />
     52(Line 1) JOBNAME is just the name of the job you pick (whatever you like) in the scheduler system.<br />
     53<br />
     54(Line 5) NNODES indicates the number of nodes and NPROC indicates the number of processors on each node to use. For very simple jobs, both can be 1. For more intensive jobs NNODES=1 and NPROC can be up to 28 (on the typical node architecture of phoenix). For very computationally intensive jobs, you can use more than one node, but talk to Alex first.<br />
     55<br />
     56(Line 6) The maximum time to allocate for the job is specified here in units of DAYS:HOURS:MINS:00. The phoenix cluster has a maximum walltime of 21 days.<br />
     57<br />
     58(Line 14) NAMEOFSCRIPT is the file name of the MATLAB script that you are using to run ISSM.<br />
     59<br />
    6060For more details on how to specify jobs on the PACE phoenix cluster see here: http://docs.pace.gatech.edu/phoenix_cluster/submit_jobs_phnx/
    6161