Changes between Version 5 and Version 6 of mccpfe

Timestamp:

09/30/20 13:17:28 (4 years ago)

Author:

tpelle

Comment:

--

mccpfe

@@ -13 +13 @@
 deps = [];
 for i=1:numel(files)
-   deps = [deps ' ' files{i}];
+    if strcmp(files{i},'/home1/tpelle1/trunk-jpl/src/m/miscellaneous/normfit_issm.m')
+      continue
+   elseif strcmp(files{i},'/home1/tpelle1/trunk-jpl/src/m/qmu/dakota_moments.m')
+      continue
+   elseif strcmp(files{i},'/home1/tpelle1/trunk-jpl/src/m/qmu/dakota_out_parse.m')
+      continue
+   else
+      deps = [deps ' ' files{i}];
+   end
 end
 
@@ -25 +33 @@
 
 Note the following potential problems:
- * mcc needs to see all the m files and will not be able to interpret a new *.m file created on the fly (like we do with `parameterize`).
- * It will be helpful to remove dependencies that rely on special MATLAB licenses, as Pleiades only has a limited amount. For instance, one can remove 'normfit_issm.m' and 'dakota_moments.m' from the list of dependencies (if your code will not use them) so that we do not require Matlab's statistical toolbox license. 
+ * MCC needs to account for all *.m files that will be used while running your script and will not be able to interpret a new *.m file created on the fly (like we do with `parameterize`).
+ * It will be helpful to remove dependencies that rely on special MATLAB licenses, as Pleiades only has a limited amount. For instance, one can remove 'normfit_issm.m', 'dakota_moments.m', and 'dakota_out_parse.m' from the list of dependencies (if your code will not use them) so that we do not require Matlab's statistical toolbox license. Just make sure to change the path to these files to the correct one on your machine in the example code above. 
 
 == Submit a job ==
@@ -43 +51 @@
 
 #load modules
-module load comp-intel/2016.2.181
-module load mpi-sgi/mpt
+module load comp-intel/2018.3.222
+module load mpi-hpe/mpt.2.17r13
 module load matlab/2017b
 module load netcdf/4.4.1.1_mpt
@@ -61 +69 @@
 
 #Run the precompiled code
-./run_testMCC.sh $ISSM_DIR/lib:$ISSM_DIR/externalpackages/gsl/install/lib:$ISSM_DIR/externalpackages/petsc/install/lib:/nasa/intel/Compiler/2016.2.181/mkl/lib/intel64/:/nasa/intel/Compiler/2016.2.181/compilers_and_libraries_2016.2.181/linux/compiler/lib/intel64/:/nasa/sgi/mpt/2.15r20/lib:/nasa/netcdf/4.4.1.1_mpt/lib:/nasa/matlab/2017b
+./run_createMCC.sh $ISSM_DIR/lib:$ISSM_DIR/externalpackages/gsl/install/lib:$ISSM_DIR/externalpackages/petsc/install/lib:/nasa/intel/Compiler/2016.2.181/mkl/lib/intel64/:/nasa/intel/Compiler/2016.2.181/compilers_and_libraries_2016.2.181/linux/compiler/lib/intel64/:/nasa/sgi/mpt/2.15r20/lib:/nasa/netcdf/4.4.1.1_mpt/lib:/nasa/matlab/2017b
 }}}
 Potential Problems: