Changes between Version 2 and Version 3 of gscc

Timestamp:

12/09/20 14:29:12 (4 years ago)

Author:

downs

Comment:

--

gscc

@@ -52 +52 @@
 }}}
 
-== Environment ==
-
-On '''Greenplanet''', add the following lines to `~/.bashrc`:
-{{{
-#!sh
-export ISSM_DIR=PATHTOTRUNK
+== Installing ISSM ==
+
+We will install ISSM within an Anaconda environment on GSCC. To install Anaconda3 run 
+
+{{{
+#!sh
+wget https://repo.anaconda.com/archive/Anaconda3-2020.11-Linux-x86_64.sh
+chmod 755 Anaconda3-2020.11-Linux-x86_64.sh
+./Anaconda3-2020.11-Linux-x86_64.sh
+}}}
+
+Answer no at the final prompt. Activate Anaconda by typing.
+
+{{{
+#!sh
+source ~/anaconda3/bin/activate
+}}}
+
+Copy ISSM files on your home directory on GSCC, add the following lines to your `~/.bashrc` on GSCC:
+{{{
+#!sh
+module unload rocks-openmpi
+export ISSM_DIR=/home/USERNAME/trunk-jpl/
+export CONDA_DIR=/home/USERNAME/anaconda3/envs/test/
 source $ISSM_DIR/etc/environment.sh
-ml intel/2018.3 openmpi/3.1.2-slim
-}}}
-
-''Log out and log back in'' to apply this change.
+}}}
+
+Create a file called environment.yml with the following contents:
+
+{{{
+name: issm
+channels:
+  - conda-forge
+  - dbanas
+dependencies:
+  - python=3.7
+  - gcc_linux-64
+  - gxx_linux-64
+  - fortran-compiler
+  - petsc=3.12  
+  - numpy
+  - scipy
+  - matplotlib
+  - cmake
+  - libtool
+  - lapack
+  - netcdf4
+  - triangle
+  - chaco
+  - mpi
+}}}
+
+Make sure that Anaconda is activated and do 
 
 == Installing ISSM on Greenplanet ==