Changes between Version 4 and Version 5 of babylon

Timestamp:

11/09/22 18:07:29 (2 years ago)

Author:

seroussi

Comment:

new ubuntu upgrade

babylon

@@ -29 +29 @@
 == Password-less ssh ==
 
-This machine does not support public key authentification
+This machine does not support public key authentication
 
 == Environment ==
 
-On babylon, add the following lines to `~/.bashrc`:
+On babylon or amundsen, add the following lines to `~/.bashrc`:
 {{{
 #!sh
 export ISSM_DIR=PATHTOTRUNK
+
+export FC=gfortran
+export F77=gfortran
+export F90=gfortran
+export CC=gcc
+export CXX=g++
+
 source $ISSM_DIR/etc/environment.sh
-alias ma='matlab -nodesktop -nosplash -r "addpath $ISSM_DIR/src/m/dev; devpath;"'
+alias ma='LD_PRELOAD="/usr/lib/x86_64-linux-gnu/libstdc++.so.6" /thayerfs/apps/matlab/bin/matlab -nodesktop -nosplash -r "addpath $ISSM_DIR/src
+/m/dev; devpath;"'
 }}}
 
@@ -45 +53 @@
 == Installing ISSM on babylon ==
 
-Babylon has both Intel and GNU compilers. Installation should be done with the Intel compilers. You can follow the instructions on the website [http://issm.jpl.nasa.gov/download/unix/]. Choose Petsc v3.15 or later (install-3.15-babylon.sh). You should not need Python.
+Babylon and amundsen have both Intel and GNU compilers. Installation should be done with the GNU compilers. You can follow the instructions on the website [http://issm.jpl.nasa.gov/download/unix/]. Choose PETSc v3.16 or later (install-3.16-linux.sh). You should not need Python.
 
 Use the following configuration script (adapt to your needs):
@@ -52 +60 @@
 #!/bin/bash
 ./configure \
-   CC=icc CXX=icpc F90=ifort FC=ifort \
+   CC=gcc CXX=g++ F90=gfortran FC=gfortran \
    --prefix=${ISSM_DIR} \
-   --with-numthreads=2 \
+   --with-numthreads=20 \
    --with-matlab-dir="/thayerfs/apps/matlab/" \
    --with-mpi-include="${ISSM_DIR}/externalpackages/petsc/install/include" \
@@ -64 +72 @@
    --with-mumps-dir="${ISSM_DIR}/externalpackages/petsc/install" \
    --with-petsc-dir="${ISSM_DIR}/externalpackages/petsc/install" \
+   --with-m1qn3-dir="${ISSM_DIR}/externalpackages/m1qn3/install" \
    --with-triangle-dir="${ISSM_DIR}/externalpackages/triangle/install" \
-   --with-m1qn3-dir="${ISSM_DIR}/externalpackages/m1qn3/install" \
    --enable-debugging \
    --enable-development