Changes between Initial Version and Version 1 of babylon

Timestamp:

08/24/21 08:11:03 (3 years ago)

Author:

seroussi

Comment:

Added page for Babylon compilation

babylon

@@ +1 @@
+== Getting an account ==
+
+You automatically have access to the machine if you are part of Dartmouth's Thayer School of Engineering.
+
+== ssh configuration ==
+
+Babylon is actually a cluster of 12 independent servers, so you need to first choose on which one you are going to log in. 
+The status of the cluster usage can be found here : https://cluster-usage.thayer.dartmouth.edu/.
+
+You can add the following lines to `~/.ssh/config` on your local machine:
+{{{
+#!sh
+Host babylon babylon?.thayer.dartmouth.edu
+   Hostname babylon?.thayer.dartmouth.edu
+   User USERNAME
+
+}}}
+and replace `USERNAME` by your Dartmouth NetID, which is your username.
+
+Once this is done, you can ssh discovery by simply doing:
+
+{{{
+#!sh
+ssh babylonX 
+}}}
+
+with X the number of the machine you want to access
+
+== Password-less ssh ==
+
+This machine does not support public key authentification
+
+== Environment ==
+
+On babylon, add the following lines to `~/.bashrc`:
+{{{
+#!sh
+export ISSM_DIR=PATHTOTRUNK
+source $ISSM_DIR/etc/environment.sh
+alias ma='matlab -nodesktop -nosplash -r "addpath $ISSM_DIR/src/m/dev; devpath;"'
+}}}
+
+''Log out and log back in'' to apply this change.
+
+== Installing ISSM on babylon ==
+
+Babylon has both Intel and GNU compilers. Installation should be done with the Intel compilers. You can follow the instructions on the website [http://issm.jpl.nasa.gov/download/unix/]. Choose Petsc v3.15 or later. You should not need Python.
+
+Use the following configuration script (adapt to your needs):
+
+{{{
+#!/bin/bash
+./configure \
+   CC=icc CXX=icpc F90=ifort FC=ifort \
+   --prefix=${ISSM_DIR} \
+   --with-numthreads=2 \
+   --with-matlab-dir="/thayerfs/apps/matlab/" \
+   --with-mpi-include="${ISSM_DIR}/externalpackages/petsc/install/include" \
+   --with-mpi-libflags="-L${ISSM_DIR}/externalpackages/petsc/install/lib -lmpifort -lmpi" \
+   --with-metis-dir="${ISSM_DIR}/externalpackages/petsc/install" \
+   --with-parmetis-dir="${ISSM_DIR}/externalpackages/petsc/install" \
+   --with-blas-lapack-dir="${ISSM_DIR}/externalpackages/petsc/install" \
+   --with-scalapack-dir="${ISSM_DIR}/externalpackages/petsc/install" \
+   --with-mumps-dir="${ISSM_DIR}/externalpackages/petsc/install" \
+   --with-petsc-dir="${ISSM_DIR}/externalpackages/petsc/install" \
+   --with-triangle-dir="${ISSM_DIR}/externalpackages/triangle/install" \
+   --with-m1qn3-dir="${ISSM_DIR}/externalpackages/m1qn3/install" \
+   --enable-debugging \
+   --enable-development
+}}}
+