Changes between Version 1 and Version 2 of Stallo

Timestamp:

11/20/17 07:14:32 (7 years ago)

Author:

bdef

Comment:

--

Stallo

@@ -53 +53 @@
 == Environment ==
 
-On Stallo, add the following lines to `~/.bashrc`:
+On Stallo, we were ask not to load modules in .bashrc if possible. This is fine, just use the load command that are on top of the configure.sh while installing and while running the loads are taken care of by the queue file. You still need an ISSM path in your .bashrc as follows:
 {{{
-#!sh
-#Module loading                                                                                           
-module load Automake/1.15-intel-2016a
-module load libtool/2.4.6-intel-2016a
-module load CMake/3.5.2-intel-2016a
-module load intel/2016a
-module load ParMETIS/4.0.3-intel-2016a
-module load MUMPS/5.1.1-intel-2016a-parmetis
-module load PETSc/3.7.2-intel-2016a-Python-2.7.11
-module load FFTW/3.3.4-intel-2016a
-module load OpenSSL/1.0.1s-intel-2016a
 #ISSM                                                                                                     
 export ISSM_DIR=PATHTOISSM
@@ -72 +61 @@
 ''Log out and log back in'' or source you .bashrc to apply this change.
 
-== Installing ISSM on Vilje ==
+== Installing ISSM on Stallo ==
 
 The only package from external packages that you may require (if you need to run some inversion) is m1qn3. Install it from external packages
@@ -85 +74 @@
 }}}
 
-Use the following configuration script:
+Use the following configuration script. Notur support made a great job at having a properly installed PETSc here so we have a clean configure file,:
 
 {{{
 #!/bin/sh
+#Stallo configuration script
+#this uses system stuff, you need to load the following:
+module purge
+module load CMake/3.8.0-GCCcore-6.3.0
+module load Automake/1.15.1-GCCcore-6.3.0
+module load libtool/2.4.6
+#module load OpenSSL/1.1.0e-intel-2017a
+module load PETSc/3.7.5-intel-2017a-downloaded-deps
+
 ./configure \
     --prefix=$ISSM_DIR \
     --without-kriging \
     --with-wrappers=no \
-    --with-petsc-dir="/global/hds/software/cpu/eb3/PETSc/3.7.2-intel-2016a-Python-2.7.11" \
-    --with-mpi-include="/global/hds/software/cpu/eb3/impi/5.1.2.150-iccifort-2016.1.150-GCC-4.9.3-2.25/include64" \
-    --with-mpi-libflags="-L/global/hds/software/cpu/eb3/impi/5.1.2.150-iccifort-2016.1.150-GCC-4.9.3-2.25/lib64 -lmpich -lmpichf90 -lmpichcxx -lmpl" \
-    --with-metis-dir="/global/hds/software/cpu/eb3/ParMETIS/4.0.3-intel-2016a/include" \
-    --with-mumps-dir="/global/hds/software/cpu/eb3/MUMPS/5.1.1-intel-2016a-parmetis" \
+    --with-petsc-dir="/global/hds/software/cpu/eb3/PETSc/3.7.5-intel-2017a-downloaded-deps" \
+    --with-triangle-dir="$ISSM_DIR/externalpackages/triangle/install" \
+    --with-mpi-include="/global/hds/software/cpu/eb3/impi/2017.1.132-iccifort-2017.1.132-GCC-6.3.0-2.27/include64" \
+    --with-mpi-libflags="-L/global/hds/software/cpu/eb3/impi/2017.1.132-iccifort-2017.1.132-GCC-6.3.0-2.27/lib64 -lmpich -lmpichf90 -lmpichcxx -lmpl" \
+    --with-metis-dir="/global/hds/software/cpu/eb3/PETSc/3.7.5-intel-2017a-downloaded-deps" \
+    --with-mumps-dir="/global/hds/software/cpu/eb3/PETSc/3.7.5-intel-2017a-downloaded-deps" \
     --with-m1qn3-dir="$ISSM_DIR/externalpackages/m1qn3/install" \
-    --with-hypre-dir="/global/hds/software/cpu/eb3/Hypre/2.11.1-intel-2016a" \
-    --with-mkl-libflags="-L/global/hds/software/cpu/eb3/imkl/11.3.1.150-iimpi-8.1.5-GCC-4.9.3-2.25/mkl/lib/intel64 -lmkl_blacs_intelmpi_lp64 -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -liomp5 -lpthread -lmkl_scalapack_lp64 -L/global/hds/software/cpu/eb3/FFTW/3.3.4-intel-2016a/lib/ -lfftw3_mpi -L/global/hds/software/cpu/eb3/SuiteSparse/4.5.3-intel-2016a-ParMETIS-4.0.3/lib -lklu -lamd -lamd -lbtf -lsuitesparseconfig -lumfpack -lcholmod -L/global/hds/software/cpu/eb3/ifort/2016.1.150-GCC-4.9.3-2.25/lib/intel64 -lifcore -lifport -L/global/hds/software/cpu/eb3/OpenSSL/1.0.1s-intel-2016a/lib -lssl -L/global/hds/software/cpu/eb3/SCOTCH/6.0.4-intel-2016a/lib -lesmumps -lptesmumps  -lptscotch  -lptscotcherr  -lptscotcherrexit -lscotch -lscotcherr -lscotcherrexit -lscotch_group" \
+    --with-hypre-dir="/global/hds/software/cpu/eb3/PETSc/3.7.5-intel-2017a-downloaded-deps" \
+    --with-mkl-libflags="-L/global/hds/software/cpu/eb3/imkl/2017.1.132-iimpi-2017a/mkl/lib/intel64 -lmkl_scalapack_lp64 -lmkl_blacs_intelmpi_lp64 -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core  -lmkl_scalapack_lp64 -lpthread" \
     --enable-development
+
 }}}