# # ChangeLog for issm/trunk # # Generated by Trac 1.4.3 # 03/18/25 14:27:47 Wed, 15 Nov 2023 20:14:04 GMT Mathieu Morlighem [28013] * issm/trunk (modified) * issm/trunk/configure.ac (modified) * issm/trunk/etc/environment.sh (modified) * issm/trunk/examples/EsaGRACE/runme.m (modified) * issm/trunk/examples/StISSM (copied) * issm/trunk/externalpackages/adjoinablempi/install-pleaides-gcc.sh (modified) * issm/trunk/externalpackages/adjoinablempi/install-pleaides.sh (modified) * issm/trunk/externalpackages/adolc/install-withampi-pleiades-gcc.sh (modified) * issm/trunk/externalpackages/adolc/install-withampi-pleiades.sh (modified) * issm/trunk/externalpackages/adolc/install.sh (modified) * issm/trunk/externalpackages/boost/install-1.55-pleiades.sh (modified) * issm/trunk/externalpackages/boost/install-1.7-linux-static.sh (modified) * issm/trunk/externalpackages/boost/install-1.7-linux-valgrind.sh (modified) * issm/trunk/externalpackages/boost/install-1.7-mac-valgrind.sh (copied) * 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(copied) * issm/trunk/test/NightlyRun/test906.m (modified) merged trunk-jpl and trunk for revision 28011 Wed, 25 Oct 2023 20:58:04 GMT bgetraer [27969] * issm/trunk/src/m/solve/createMCC.m (added) NEW: createMCC function Thu, 07 Sep 2023 03:15:43 GMT musselman [27899] * issm/trunk/src/m/contrib/musselman/read_netCDF.py (modified) * issm/trunk/src/m/contrib/musselman/write_netCDF.py (modified) Enhanced readability in python files. Added try/except block at start ... Wed, 06 Sep 2023 21:41:22 GMT musselman [27898] * issm/trunk/src/m/contrib/musselman/read_netCDF.py (modified) * issm/trunk/src/m/contrib/musselman/write_netCDF.py (modified) Added functionality for lists (arrays) of objects in python for ... Tue, 05 Sep 2023 22:48:58 GMT musselman [27896] * issm/trunk/src/m/contrib/musselman/read_netCDF.py (modified) Updated read_netCDF.py to include functionality for arrays of objects ... Fri, 01 Sep 2023 23:40:56 GMT musselman [27894] * issm/trunk/src/m/contrib/musselman/read_netCDF.m (modified) * issm/trunk/src/m/contrib/musselman/write_netCDF.m (modified) Added functionality for cell arrays of objects like definitions in ... Wed, 30 Aug 2023 22:08:57 GMT musselman [27889] * issm/trunk/src/m/contrib/musselman/README.txt (modified) * issm/trunk/src/m/contrib/musselman/read_netCDF.m (modified) * issm/trunk/src/m/contrib/musselman/read_netCDF.py (modified) * issm/trunk/src/m/contrib/musselman/write_netCDF.m (modified) * issm/trunk/src/m/contrib/musselman/write_netCDF.py (modified) Removed global vars from all files. Updated read log statements to ... Wed, 30 Aug 2023 16:20:32 GMT musselman [27888] * issm/trunk/src/m/contrib/musselman/HEDUnet_filter_plots.ipynb (added) ADD: Jupyter Notebook for extracting filters from each layer of ... Thu, 24 Aug 2023 00:59:34 GMT musselman [27887] * issm/trunk/src/m/contrib/musselman/README.txt (modified) Added documentation recording known limitations of read/write_netCDF ... Wed, 23 Aug 2023 17:37:09 GMT musselman [27885] * issm/trunk/src/m/contrib/musselman/README.txt (added) ADD: Readme documentation/ user guide for read/write_netCDF suite. 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Tue, 22 Aug 2023 17:43:35 GMT musselman [27882] * issm/trunk/src/m/contrib/musselman/read_netCDF.py (added) * issm/trunk/src/m/contrib/musselman/read_netCDF_beta.py (deleted) * issm/trunk/src/m/contrib/musselman/read_netCDF_commit.py (deleted) * issm/trunk/src/m/contrib/musselman/write_netCDF.py (added) * issm/trunk/src/m/contrib/musselman/write_netCDF_beta.py (deleted) * issm/trunk/src/m/contrib/musselman/write_netCDF_commit.py (deleted) Streamlined write_netCDF.py to be more computationally efficient. Fri, 18 Aug 2023 20:21:17 GMT musselman [27881] * issm/trunk/src/m/contrib/musselman/write_netCDF_commit.py (modified) Added support for results.solution.steps objects and for lists of ... Thu, 17 Aug 2023 17:06:39 GMT musselman [27880] * issm/trunk/src/m/contrib/musselman/read_netCDF_commit.py (modified) Added type recognition for integers in read_netCDF_commit.py Thu, 17 Aug 2023 04:26:04 GMT musselman [27878] * issm/trunk/src/m/contrib/musselman/read_netCDF_commit.py (modified) Added functionality to read_netCDF_commit.py to handle ... Wed, 16 Aug 2023 17:34:25 GMT musselman [27877] * issm/trunk/src/m/contrib/musselman/read_netCDF.m (modified) * issm/trunk/src/m/contrib/musselman/write_netCDF.m (modified) Streamlined some code in both scripts. Added functionality for ... Fri, 11 Aug 2023 01:34:53 GMT musselman [27875] * issm/trunk/src/m/contrib/musselman/read_netCDF.m (modified) * issm/trunk/src/m/contrib/musselman/write_netCDF.m (modified) Added support in matlab read/write_netCDF files for multidimensional ... Tue, 08 Aug 2023 18:26:37 GMT musselman [27874] * issm/trunk/src/m/contrib/musselman/read_netCDF.m (modified) * issm/trunk/src/m/contrib/musselman/read_netCDF_commit.py (modified) * issm/trunk/src/m/contrib/musselman/write_netCDF.m (modified) * issm/trunk/src/m/contrib/musselman/write_netCDF_commit.py (modified) Fixed bugs so that read/write files function interchangeably on ... Wed, 02 Aug 2023 21:31:17 GMT musselman [27868] * issm/trunk/src/m/contrib/musselman/write_netCDF.m (added) ADD: write_netCDF.m is the matlab version of write_netCDF.py. This ... Mon, 31 Jul 2023 17:31:28 GMT musselman [27864] * issm/trunk/src/m/contrib/musselman/read_netCDF.m (modified) read_netCDF.m: Removed some log statements, added some comments ... Thu, 27 Jul 2023 00:49:42 GMT musselman [27860] * issm/trunk/src/m/contrib/musselman/read_netCDF.m (added) ADD: read_netCDF.m populates a model() variable with data from ... Thu, 27 Jul 2023 00:09:27 GMT musselman [27859] * issm/trunk/src/m/contrib/musselman/read_netCDF_commit.py (modified) * issm/trunk/src/m/contrib/musselman/write_netCDF_commit.py (modified) Added inversion/m1qn3inversion/taoinversion class compatibility to ... Wed, 26 Jul 2023 19:04:55 GMT musselman [27858] * issm/trunk/src/m/contrib/musselman/read_netCDF_commit.py (modified) * issm/trunk/src/m/contrib/musselman/write_netCDF_commit.py (modified) Modified read/write_netCDF_commit.py files to work with bool/numpy ... Wed, 19 Jul 2023 17:40:00 GMT musselman [27838] * issm/trunk/src/m/contrib/musselman/read_netCDF_commit.py (modified) * issm/trunk/src/m/contrib/musselman/write_netCDF_commit.py (modified) write_netCDF.py: modified an exception statement to pass an expected ... Wed, 19 Jul 2023 00:36:04 GMT musselman [27836] * issm/trunk/src/m/contrib/musselman (added) * issm/trunk/src/m/contrib/musselman/read_netCDF_beta.py (added) * issm/trunk/src/m/contrib/musselman/read_netCDF_commit.py (added) * issm/trunk/src/m/contrib/musselman/write_netCDF_beta.py (added) * issm/trunk/src/m/contrib/musselman/write_netCDF_commit.py (added) Added functionality to create subclass instances in results class ... Thu, 30 Mar 2023 18:09:37 GMT dlcheng [27670] * issm/trunk/externalpackages/geocode/geoCode.m (modified) * issm/trunk/externalpackages/geocode/install.sh (modified) CHG: Geocode https update. Wed, 15 Mar 2023 22:20:49 GMT dlcheng [27645] * issm/trunk/externalpackages/hdf5/install-1-parallel-with_tests.sh (modified) * issm/trunk/externalpackages/hdf5/install-1-parallel.sh (modified) * issm/trunk/externalpackages/hdf5/install-1-with_tests.sh (modified) * issm/trunk/externalpackages/hdf5/install-1.sh (modified) CHG: Updating hdf5 install script version. 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issm/trunk/test/Par/SquareShelf2.py (modified) * issm/trunk/test/Par/SquareShelfConstrained.py (modified) * issm/trunk/test/Par/SquareThermal.py (modified) * issm/trunk/test/Par/ValleyGlacierShelf.par (modified) * issm/trunk/test/Par/ValleyGlacierShelf.py (modified) merged trunk-jpl and trunk for revision 24310 Fri, 24 May 2019 03:53:20 GMT jdquinn [23934] * issm/trunk/packagers/ubuntu-dakota/package.sh (added) CHG: Modified permissions Fri, 24 May 2019 03:52:40 GMT jdquinn [23933] * issm/trunk/packagers/ubuntu-dakota/package.sh (deleted) CHG: Modified permissions Fri, 24 May 2019 03:49:23 GMT jdquinn [23932] * issm/trunk/packagers/ubuntu-dakota/package.sh (added) CHG: Modified permissions and extended attributes Fri, 24 May 2019 03:48:43 GMT jdquinn [23931] * issm/trunk/packagers/ubuntu-dakota/package.sh (deleted) CHG: Modified permissions and extended attributes Thu, 23 May 2019 21:53:41 GMT jdquinn [23930] * issm/trunk/externalpackages/boost/install-1.55-linux64-static.sh (modified) CHG: Removed bjam option runtime-link Thu, 23 May 2019 19:42:13 GMT jdquinn [23929] * issm/trunk/externalpackages/boost/install-1.55-linux64-static.sh (added) * issm/trunk/externalpackages/boost/install-1.55-macosx-el_capitan-static.sh (added) * issm/trunk/externalpackages/dakota/install-6.2-linux64-static.sh (added) * issm/trunk/externalpackages/dakota/install-6.2-macosx64-static.sh (added) * issm/trunk/jenkins/jenkins.sh (added) * issm/trunk/jenkins/linux64_ross_dakota_static (added) * issm/trunk/jenkins/linux64_ross_static (added) * issm/trunk/jenkins/macosx_pine-island_dakota (added) * issm/trunk/jenkins/macosx_pine-island_dakota_static (added) * issm/trunk/jenkins/macosx_pine-island_static (added) CHG: Updated permissions and remove extended attributes Thu, 23 May 2019 19:39:59 GMT jdquinn [23928] * issm/trunk/externalpackages/boost/install-1.55-linux64-static.sh (deleted) * issm/trunk/externalpackages/boost/install-1.55-macosx-el_capitan-static.sh (deleted) * issm/trunk/externalpackages/dakota/install-6.2-linux64-static.sh (deleted) * issm/trunk/externalpackages/dakota/install-6.2-macosx64-static.sh (deleted) * issm/trunk/jenkins/jenkins.sh (deleted) * issm/trunk/jenkins/linux64_ross_dakota_static (deleted) * issm/trunk/jenkins/linux64_ross_static (deleted) * issm/trunk/jenkins/macosx_pine-island_dakota (deleted) * issm/trunk/jenkins/macosx_pine-island_dakota_static (deleted) * issm/trunk/jenkins/macosx_pine-island_static (deleted) CHG: Need to delete certain assets in order to update permissions and ... Thu, 23 May 2019 18:34:41 GMT jdquinn [23927] * issm/trunk/externalpackages/boost/install-1.55-linux64-static.sh (added) * issm/trunk/externalpackages/dakota/install-6.2-linux64-static.sh (added) * issm/trunk/externalpackages/dakota/install-6.2-macosx64-static.sh (modified) * issm/trunk/jenkins/linux64_ross_dakota_static (added) * issm/trunk/jenkins/linux64_ross_static (modified) * issm/trunk/m4/issm_options.m4 (modified) * issm/trunk/packagers/macosx-dakota/package.sh (modified) * issm/trunk/packagers/macosx/package.sh (modified) * issm/trunk/packagers/ubuntu-dakota (added) * issm/trunk/packagers/ubuntu-dakota/package.sh (added) * issm/trunk/packagers/ubuntu/package.sh (modified) CHG: Added configuration for Ubuntu with Dakota binaries; clean up of ... Sat, 11 May 2019 08:14:43 GMT jdquinn [23918] * issm/trunk/packagers/macosx-dakota/package.sh (modified) BUG: Corrected package name. Sat, 11 May 2019 08:11:38 GMT jdquinn [23917] * issm/trunk/packagers/macosx-dakota/package.sh (modified) BUG: For some reason, test218 passes but the build fails: reverted to ... Sat, 11 May 2019 07:38:55 GMT jdquinn [23916] * issm/trunk/jenkins/macosx_pine-island_dakota_static (modified) BUG: Accidentally removed scalapack path from config. Sat, 11 May 2019 03:45:57 GMT jdquinn [23915] * issm/trunk/externalpackages/boost/install-1.55-macosx-el_capitan-static.sh (added) * issm/trunk/externalpackages/dakota/install-6.2-macosx64-static.sh (added) * issm/trunk/jenkins/macosx_pine-island_dakota_static (modified) * issm/trunk/m4/issm_options.m4 (modified) * issm/trunk/packagers/macosx-dakota/package.sh (modified) BUG: Corrected linking of boost archives to Dakota for Mac Dakota ... Thu, 20 Dec 2018 23:47:45 GMT jdquinn [23567] * issm/trunk/externalpackages/mpich/install-3.2-macosx64-static.sh (modified) CHG: Corrected issue with PETSc not compiling statically Thu, 20 Dec 2018 22:02:27 GMT jdquinn [23564] * issm/trunk/externalpackages/petsc/install-3.7-macosx64-static.sh (modified) CHG: Corrected issue with PETSc not compiling statically Mon, 05 Nov 2018 21:45:56 GMT jdquinn [23458] * issm/trunk/externalpackages/dakota/install-6.2-macosx64.sh (modified) BUG: Dealing with unbound variable Mon, 05 Nov 2018 20:08:09 GMT jdquinn [23456] * issm/trunk/externalpackages/boost/install-1.55-macosx-el_capitan.sh (modified) * issm/trunk/externalpackages/boost/install-1.55-macosx-yosemite.sh (modified) CHG: Corrected Boost installation scripts Mon, 05 Nov 2018 18:17:51 GMT jdquinn [23454] * issm/trunk/externalpackages/dakota/configs/6.2/InstallDarwinDylibs.cmake.patch (added) * issm/trunk/externalpackages/dakota/install-6.2-macosx64.sh (modified) CHG: Corrected config for Mac 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issm/trunk/src/wrappers/python/Makefile.am (modified) * issm/trunk/src/wrappers/python/io/FetchPythonData.cpp (modified) * issm/trunk/src/wrappers/python/io/pythonio.h (modified) * issm/trunk/test (modified) * issm/trunk/test/Archives/Archive245.arch (copied) * issm/trunk/test/NightlyRun/runme.py (modified) * issm/trunk/test/NightlyRun/test2084.m (modified) * issm/trunk/test/NightlyRun/test2084.py (modified) * issm/trunk/test/NightlyRun/test211.js (modified) * issm/trunk/test/NightlyRun/test211.m (modified) * issm/trunk/test/NightlyRun/test211.py (modified) * issm/trunk/test/NightlyRun/test215.m (modified) * issm/trunk/test/NightlyRun/test215.py (modified) * issm/trunk/test/NightlyRun/test234.py (copied) * issm/trunk/test/NightlyRun/test235.py (copied) * issm/trunk/test/NightlyRun/test245.m (copied) * issm/trunk/test/NightlyRun/test245.py (copied) * issm/trunk/test/NightlyRun/test290.m (modified) * issm/trunk/test/NightlyRun/test290.py (modified) * issm/trunk/test/NightlyRun/test3015.m (modified) * issm/trunk/test/NightlyRun/test3480.m (modified) * issm/trunk/test/NightlyRun/test3481.m (modified) * issm/trunk/test/NightlyRun/test413.py (copied) * issm/trunk/test/NightlyRun/test414.py (copied) * issm/trunk/test/NightlyRun/test417.py (copied) * issm/trunk/test/NightlyRun/test418.py (copied) * issm/trunk/test/NightlyRun/test420.py (copied) * issm/trunk/test/NightlyRun/test421.m (modified) * issm/trunk/test/NightlyRun/test421.py (modified) * issm/trunk/test/NightlyRun/test444.py (copied) * issm/trunk/test/NightlyRun/test455.m (modified) * issm/trunk/test/NightlyRun/test455.py (modified) * issm/trunk/test/NightlyRun/test701.m (modified) * issm/trunk/test/NightlyRun/test701.py (modified) * issm/trunk/test/NightlyRun/test702.m (modified) * issm/trunk/test/NightlyRun/test702.py (copied) merged trunk-jpl and trunk for revision 23392 Fri, 05 Oct 2018 17:33:36 GMT jdquinn [23389] * issm/trunk/externalpackages/autotools/install-win.sh (modified) CHG: Autotools config for Windows Fri, 05 Oct 2018 00:31:00 GMT jdquinn [23386] * issm/trunk/jenkins/windows_static (modified) BUG: Windows 10 binaries build -> error in list of external packages Fri, 05 Oct 2018 00:11:03 GMT jdquinn [23385] * issm/trunk/externalpackages/gmsh/install-win64-precompiled.sh (modified) * issm/trunk/externalpackages/gmt/install-win64-precompiled.sh (added) * issm/trunk/jenkins/windows_static (modified) * issm/trunk/packagers/win10/package64.sh (modified) CHG: Modified Windows 10 build and packager to use precompiled ... Wed, 03 Oct 2018 20:45:04 GMT jdquinn [23383] * issm/trunk/packagers/macosx/package.sh (modified) CHG: Updates Mac OSX binaries packager to use a relative path when ... Wed, 03 Oct 2018 20:28:38 GMT jdquinn [23382] * issm/trunk/packagers/macosx/package.sh (modified) CHG: Updates Mac OSX binaries packager to use a relative path when ... Wed, 03 Oct 2018 18:29:52 GMT jdquinn [23381] * issm/trunk/externalpackages/gmt/install-mac-precompiled.sh (added) * issm/trunk/jenkins/macosx_pine-island_static (modified) * issm/trunk/packagers/macosx/package.sh (modified) CHG: Mac binaries utilized precompiled copy of GMT (for now) Mon, 01 Oct 2018 22:38:31 GMT jdquinn [23364] * issm/trunk/externalpackages/gmsh/install-win64-precompiled.sh (added) * issm/trunk/jenkins/windows_static (modified) * issm/trunk/packagers/win10/package64.sh (modified) CHG: Adding gmsh to Windows binaries Mon, 01 Oct 2018 19:16:12 GMT jdquinn [23362] * issm/trunk/externalpackages/gmsh/install-mac-precompiled.sh (added) * issm/trunk/externalpackages/gmsh/install-static.sh (modified) * issm/trunk/jenkins/macosx_pine-island_static (modified) CHG: Packaging precompiled version of gmsh rather than attempting to ... Sun, 30 Sep 2018 03:15:33 GMT Mathieu Morlighem [23360] * issm/trunk/src/c/modules/InterpFromGridToMeshx/InterpFromGridToMeshx.cpp (modified) CHG: do not print anything in multithreaded code to avoid crash (See ... Sat, 29 Sep 2018 02:59:22 GMT jdquinn [23356] * issm/trunk/jenkins/macosx_pine-island_static (modified) CHG: Fix for gmsh support on Mac binaries Thu, 27 Sep 2018 21:12:22 GMT jdquinn [23347] * issm/trunk/jenkins/macosx_pine-island_static (modified) CHG: Reverted changes to Mac binaries config script Thu, 27 Sep 2018 20:19:32 GMT Mathieu Morlighem [23346] * issm/trunk/src/wrappers/matlab/io/ApiPrintf.cpp (modified) BUG: trying to fix bug reported by Seth Thu, 27 Sep 2018 17:26:50 GMT jdquinn [23344] * issm/trunk/jenkins/macosx_pine-island_static (modified) CHG: Attempt at fixing Mac binaries gmsh issue Thu, 27 Sep 2018 06:10:47 GMT jdquinn [23343] * issm/trunk/externalpackages/gmsh/install-static.sh (modified) * issm/trunk/jenkins/macosx_pine-island_static (modified) CHG: Attempt at fixing Mac binaries gmsh issue (cannot get a reliable ... Thu, 20 Sep 2018 01:58:24 GMT jdquinn [23326] * issm/trunk/packagers/win10/package64.sh (modified) CHG: Modified packager to use new RSA key for connecting to ross Tue, 18 Sep 2018 20:28:57 GMT jdquinn [23314] * issm/trunk/packagers/win10/package64.sh (modified) CHG: Packaging Win10 binaries instead as a tarball Tue, 18 Sep 2018 20:27:05 GMT jdquinn [23313] * issm/trunk/packagers/win10/package64.sh (modified) CHG: Packaging Win10 binaries instead as a tarball Tue, 18 Sep 2018 20:13:49 GMT jdquinn [23312] * issm/trunk/packagers/win10/package64.sh (modified) CHG: Packaging Win10 binaries instead as a tarball Tue, 18 Sep 2018 08:03:41 GMT jdquinn [23304] * issm/trunk/packagers/win10/package64.sh (modified) CHG: Packaging Win10 binaries instead as a tarball Tue, 18 Sep 2018 08:01:16 GMT jdquinn [23303] * issm/trunk/packagers/win10/package64.sh (modified) CHG: Packaging Win10 binaries instead as a tarball Tue, 18 Sep 2018 07:41:04 GMT jdquinn [23302] * issm/trunk/packagers/win10/package64.sh (modified) CHG: Packaging Win10 binaries instead as a tarball Tue, 18 Sep 2018 07:35:04 GMT jdquinn [23301] * issm/trunk/packagers/win10/package64.sh (modified) CHG: Packaging Win10 binaries instead as a tarball Tue, 18 Sep 2018 07:23:50 GMT jdquinn [23300] * issm/trunk/packagers/win10/package64.sh (modified) CHG: Packaging Win10 binaries instead as a tarball Tue, 18 Sep 2018 07:20:09 GMT jdquinn [23299] * issm/trunk/packagers/win10/package64.sh (modified) CHG: Packaging Win10 binaries instead as a tarball Tue, 18 Sep 2018 07:00:03 GMT jdquinn [23298] * issm/trunk/packagers/win10/ISSM.initial.aip (deleted) * issm/trunk/packagers/win10/ISSMlogo.ico (deleted) * issm/trunk/packagers/win10/package32.sh (deleted) * issm/trunk/packagers/win10/package64.sh (modified) * issm/trunk/packagers/win10/startup.m (deleted) CHG: Packaging Win10 binaries instead as a tarball Mon, 17 Sep 2018 22:16:18 GMT jdquinn [23297] * issm/trunk/jenkins/windows (modified) * issm/trunk/jenkins/windows_static (modified) CHG: Use maximum number of available CPUs Mon, 17 Sep 2018 22:14:16 GMT jdquinn [23296] * issm/trunk/jenkins/windows (modified) * issm/trunk/jenkins/windows_static (added) ADD: Added config for Win binaries (will be used in next build) Mon, 17 Sep 2018 17:53:51 GMT jdquinn [23295] * issm/trunk/packagers/win10 (added) * issm/trunk/packagers/win10/ISSM.initial.aip (added) * issm/trunk/packagers/win10/ISSMlogo.ico (added) * issm/trunk/packagers/win10/package32.sh (added) * issm/trunk/packagers/win10/package64.sh (added) * issm/trunk/packagers/win10/startup.m (added) ADD: Package scripts and supplemental files for Win 10 binaries Thu, 06 Sep 2018 18:35:25 GMT jdquinn [23226] * issm/trunk/externalpackages/petsc/install-3.7-linux64-static.sh (modified) CHG: Fixing configuration for Ubuntu binaries Petsc Thu, 06 Sep 2018 17:19:26 GMT jdquinn [23225] * issm/trunk/externalpackages/mpich/install-3.2-linux64-static.sh (modified) * issm/trunk/externalpackages/petsc/install-3.7-linux64-static.sh (modified) * issm/trunk/jenkins/linux64_ross_static (modified) CHG: Final commit for Linux Binaries build