# # ChangeLog for / # # Generated by Trac 1.4.3 # 09/06/26 09:42:24 Mon, 26 Jun 2023 06:27:47 GMT jdquinn [27801] * issm/trunk-jpl/jenkins/mac-silicon-basic (modified) CHG: Correct path to libgfortran Mon, 26 Jun 2023 03:45:18 GMT jdquinn [27800] * issm/trunk-jpl/jenkins/mac-silicon-basic (modified) * issm/trunk-jpl/test/NightlyRun/test517.m (modified) * issm/trunk-jpl/test/NightlyRun/test517.py (modified) * issm/trunk-jpl/test/NightlyRun/test540.m (modified) * issm/trunk-jpl/test/NightlyRun/test540.py (modified) CHG: Excluding failing tests from macOS Silicon basic build for now. Thu, 22 Jun 2023 20:51:39 GMT jdquinn [27799] * issm/trunk-jpl/src/m/mesh/triangle.m (modified) * issm/trunk-jpl/src/m/mesh/triangle.py (modified) BUG: MATLAB -> Python (orphan culling); clean up Thu, 22 Jun 2023 19:29:24 GMT Cheng Gong [27798] * issm/trunk-jpl/src/c/classes/Elements/Tria.cpp (modified) CHG: calving law for CalvingMIP can run the whole EXP4 in one ... Wed, 21 Jun 2023 21:23:42 GMT Cheng Gong [27797] * issm/trunk-jpl/src/c/classes/Elements/Tria.cpp (modified) * issm/trunk-jpl/src/m/classes/calvingcalvingmip.m (modified) ADD: CalvingMIP Exp 2 and 4, second half with no calving, use ... Wed, 21 Jun 2023 19:55:54 GMT jdquinn [27796] * issm/trunk-jpl/src/m/contrib/buzzi/gravity/vfsa.cpp (modified) * issm/trunk-jpl/src/m/contrib/larour/mdanalysis.m (modified) * issm/trunk-jpl/src/m/mech/basalstress.m (modified) * issm/trunk-jpl/src/m/modeldata/InterpFromGrid.cpp (modified) * issm/trunk-jpl/src/m/parameterization/parameterize.m (modified) * issm/trunk-jpl/src/m/parameterization/parameterize.py (modified) * issm/trunk-jpl/src/wrappers/BamgMesher/BamgMesher.cpp (modified) * issm/trunk-jpl/src/wrappers/BamgMesher/BamgMesher.js (modified) * issm/trunk-jpl/src/wrappers/Chaco/Chaco.cpp (modified) * issm/trunk-jpl/src/wrappers/ContourToMesh/ContourToMesh.js (modified) * issm/trunk-jpl/src/wrappers/DistanceToMaskBoundary/DistanceToMaskBoundary.cpp (modified) * issm/trunk-jpl/src/wrappers/ElementConnectivity/ElementConnectivity.js (modified) * issm/trunk-jpl/src/wrappers/InterpFromMeshToGrid/InterpFromMeshToGrid.cpp (modified) * issm/trunk-jpl/src/wrappers/InterpFromMeshToMesh2d/InterpFromMeshToMesh2d.js (modified) * issm/trunk-jpl/src/wrappers/IssmConfig/IssmConfig.js (modified) * issm/trunk-jpl/src/wrappers/Kriging/Kriging.cpp (modified) * issm/trunk-jpl/src/wrappers/MeshPartition/MeshPartition.cpp (modified) * issm/trunk-jpl/src/wrappers/NodeConnectivity/NodeConnectivity.js (modified) * issm/trunk-jpl/src/wrappers/PropagateFlagsFromConnectivity/PropagateFlagsFromConnectivity.cpp (modified) * issm/trunk-jpl/src/wrappers/Triangle/Triangle.cpp (modified) * issm/trunk-jpl/src/wrappers/Triangle/Triangle.js (modified) * issm/trunk-jpl/src/wrappers/matlab/io/WriteMatlabData.cpp (modified) CHG: Typos; cleanup Wed, 21 Jun 2023 19:51:15 GMT jdquinn [27795] * issm/trunk-jpl/src/c/analyses/DebrisAnalysis.cpp (modified) * issm/trunk-jpl/src/c/classes/Elements/Tria.cpp (modified) * issm/trunk-jpl/src/c/cores/debris_core.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/CreateOutputDefinitions.cpp (modified) CHG: Typo Wed, 21 Jun 2023 16:24:03 GMT Mathieu Morlighem [27794] * issm/trunk-jpl/src/c/analyses/HydrologyShreveAnalysis.cpp (modified) BUG: was not pulling the right field Tue, 20 Jun 2023 17:39:08 GMT jdquinn [27793] * issm/trunk-jpl/src/m/netCDF (moved) * issm/trunk-jpl/src/m/paraview (moved) CHG: Moving Basile’s netCDF and Paraview contributions to public. Sat, 17 Jun 2023 21:14:24 GMT jdquinn [27792] * issm/trunk-jpl/jenkins/mac-intel-basic (modified) * issm/trunk-jpl/jenkins/mac-intel-binaries-matlab (modified) * issm/trunk-jpl/jenkins/mac-intel-dakota (modified) * issm/trunk-jpl/jenkins/mac-intel-examples (modified) * issm/trunk-jpl/jenkins/mac-intel-full (modified) * issm/trunk-jpl/jenkins/mac-intel-solid_earth (modified) * issm/trunk-jpl/test/NightlyRun/test419.m (modified) * issm/trunk-jpl/test/NightlyRun/test419.py (modified) CHG: Updated path to libgfortran; eased tolerances Sat, 17 Jun 2023 20:29:47 GMT jdquinn [27791] * issm/trunk-jpl/src/wrappers/python/Makefile.am (modified) CHG: Adding Xcode and CLT frameworks path to rpath for macOS Python ... Sat, 17 Jun 2023 03:35:09 GMT jdquinn [27790] * issm/trunk-jpl/jenkins/mac-intel-binaries-python-3 (modified) CHG: Minor adjustment to Python 3 path Thu, 15 Jun 2023 19:27:15 GMT Cheng Gong [27789] * issm/trunk-jpl/src/c/analyses/LevelsetAnalysis.cpp (modified) * issm/trunk-jpl/src/c/classes/Elements/Element.cpp (modified) * issm/trunk-jpl/src/c/classes/Elements/Element.h (modified) * issm/trunk-jpl/src/c/classes/Elements/Tria.cpp (modified) * issm/trunk-jpl/src/c/classes/Elements/Tria.h (modified) * issm/trunk-jpl/src/c/modules/Calvingx/Calvingx.cpp (modified) * issm/trunk-jpl/src/c/shared/Enum/EnumDefinitions.h (modified) * issm/trunk-jpl/src/c/shared/io/Marshalling/IoCodeConversions.cpp (modified) * issm/trunk-jpl/src/m/classes/calvingcalvingmip.m (added) * issm/trunk-jpl/src/m/contrib/chenggong/dataprocessing/expxy2shpll.m (moved) * issm/trunk-jpl/src/m/contrib/chenggong/modeldata/interpFromAtlasDEM.m (added) * issm/trunk-jpl/src/m/contrib/chenggong/modeldata/interpFromMEaSUREsGeotiff.m (moved) * issm/trunk-jpl/src/m/contrib/chenggong/visualization/plotCompareTransientFlowline.m (modified) * issm/trunk-jpl/src/m/exp/isoline.m (modified) * issm/trunk-jpl/src/m/modeldata/interpBedmachineGreenland.m (modified) ADD: a new calving law for calvingMIP experiments Tue, 13 Jun 2023 02:16:37 GMT jdquinn [27788] * issm/trunk-jpl/jenkins/mac-silicon-basic (modified) BUG: Updated path to libgfortran Mon, 12 Jun 2023 18:52:10 GMT jdquinn [27787] * issm/trunk-jpl/test/NightlyRun/GetIds.py (modified) BUG: Use MATLAB style indexing of ranges in test suites Fri, 09 Jun 2023 21:12:25 GMT jdquinn [27786] * issm/trunk-jpl/src/m/coordsystems/gmtmask.m (modified) * issm/trunk-jpl/src/m/coordsystems/gmtmask.py (modified) BUG: Remove -Ve option when calling gmtselect when working with GMT 6.0.0 Fri, 09 Jun 2023 17:51:46 GMT jdquinn [27785] * issm/trunk-jpl/externalpackages/gmt/install-6-linux-static.sh (modified) * issm/trunk-jpl/externalpackages/gmt/install-6-mac-static.sh (modified) BUG: Quick fix for distributable packages: leave regular builds at ... Thu, 08 Jun 2023 21:32:10 GMT jdquinn [27784] * issm/trunk-jpl/externalpackages/gmt/configs/6.0/static/cmake/modules/FindGDAL.cmake (modified) * issm/trunk-jpl/externalpackages/gmt/configs/6.0/static/cmake/modules/FindNETCDF.cmake (modified) * issm/trunk-jpl/scripts/py_to_pyc.sh (modified) BUG: Fixes for distributable packages (static linking of HDF5 libs to ... Tue, 06 Jun 2023 16:52:43 GMT vverjans [27783] * issm/trunk-jpl/src/m/classes/basalforcingsbeckmanngoosse.m (modified) BUG: adding yts when marshalling basalforcingsbeckmanngoosse Mon, 05 Jun 2023 21:08:11 GMT jdquinn [27782] * issm/trunk-jpl/test/NightlyRun/runme.py (modified) BUG: Allow runme to be called as function or script. Mon, 05 Jun 2023 19:26:25 GMT jdquinn [27781] * issm/trunk-jpl/test/NightlyRun/runme.py (modified) BUG: Allow runme to be called as function or script. Mon, 05 Jun 2023 14:35:05 GMT vverjans [27780] * issm/trunk-jpl/src/c/modules/ModelProcessorx/CreateParameters.cpp (modified) * issm/trunk-jpl/src/c/modules/StochasticForcingx/StochasticForcingx.cpp (modified) * issm/trunk-jpl/src/c/shared/Enum/Enum.vim (modified) * issm/trunk-jpl/src/c/shared/Enum/EnumDefinitions.h (modified) * issm/trunk-jpl/src/c/shared/Enum/EnumToStringx.cpp (modified) * issm/trunk-jpl/src/c/shared/Enum/Enumjl.vim (modified) * issm/trunk-jpl/src/c/shared/Enum/StringToEnumx.cpp (modified) * issm/trunk-jpl/src/m/classes/stochasticforcing.m (modified) * issm/trunk-jpl/src/m/classes/stochasticforcing.py (modified) * issm/trunk-jpl/test/Archives/Archive546.arch (added) * issm/trunk-jpl/test/NightlyRun/test546.m (added) * issm/trunk-jpl/test/NightlyRun/test546.py (added) NEW allowing for time-varying stochasticforcing covariance matrix Fri, 02 Jun 2023 14:40:51 GMT hshim [27779] * issm/trunk-jpl/src/m/classes/basalforcingsismip6.m (modified) Fix: check dimension of thermal forcing depth Thu, 01 Jun 2023 18:42:37 GMT jdquinn [27778] * issm/trunk-jpl/src/m/classes/SMBsemic.m (modified) CHG: Clean up Wed, 31 May 2023 17:05:41 GMT vverjans [27777] * issm/trunk-jpl/test/NightlyRun/runme.py (modified) BUG: fixing runme.py that does not work Thu, 25 May 2023 23:51:27 GMT Mathieu Morlighem [27776] * issm/trunk-jpl/src/c/shared/Exceptions/exceptions.h (modified) CHG: minor Tue, 23 May 2023 12:41:44 GMT Mathieu Morlighem [27775] * issm/trunk-jpl/src/m/classes/issmsettings.js (modified) * issm/trunk-jpl/src/m/classes/issmsettings.m (modified) * issm/trunk-jpl/src/m/classes/issmsettings.py (modified) CHG: better description of output_frequency Tue, 23 May 2023 03:09:22 GMT Eric.Larour [27774] * issm/branches/trunk-larour-SLPS2022/src/m/solve/waitonlock.m (modified) CHG: pfeuq left out! Mon, 22 May 2023 03:03:36 GMT inwoo [27773] * issm/trunk-jpl/src/c/classes/Elements/Element.cpp (modified) * issm/trunk-jpl/src/c/modules/SurfaceMassBalancex/run_semic_transient.f90 (modified) * issm/trunk-jpl/src/m/classes/SMBsemic.m (modified) * issm/trunk-jpl/src/m/classes/SMBsemic.py (modified) CHG: Update SEMIC to enable the output request of SmbRefreeze value. ... Sun, 21 May 2023 19:05:15 GMT Eric.Larour [27772] * issm/branches/trunk-larour-SLPS2022/src/m/os/issmscpin.m (modified) CHG: new PFE flags for multiple download Sat, 20 May 2023 01:37:56 GMT Eric.Larour [27771] * issm/branches/trunk-larour-SLPS2022/src/c/cores/sealevelchange_core.cpp (modified) CHG: debug. Fri, 19 May 2023 16:35:01 GMT schlegel [27770] * issm/trunk-jpl/externalpackages/dakota/install-6.2-pleiades.sh (modified) CHG: revert old pfe install Fri, 19 May 2023 16:34:09 GMT schlegel [27769] * issm/trunk-jpl/externalpackages/dakota/install-6.2-pleiades.sh (modified) * issm/trunk-jpl/externalpackages/dakota/install-6.2-pleiades_toss4.sh (added) CHG: adding pfe toss4 install Fri, 19 May 2023 16:32:47 GMT schlegel [27768] * issm/trunk-jpl/externalpackages/boost/install-1.55-pleiades.sh (modified) CHG: add multi index patch for dakota in toss4 Fri, 19 May 2023 15:25:35 GMT Mathieu Morlighem [27767] * issm/trunk-jpl/src/c/cores/controladm1qn3_core.cpp (modified) * issm/trunk-jpl/src/c/cores/controlm1qn3_core.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/Control/CreateParametersControl.cpp (modified) CHG: dfmin_frac now operational Fri, 19 May 2023 15:08:54 GMT Mathieu Morlighem [27766] * issm/trunk-jpl/src/m/classes/adm1qn3inversion.m (modified) * issm/trunk-jpl/src/m/classes/m1qn3inversion.m (modified) * issm/trunk-jpl/src/m/classes/m1qn3inversion.py (modified) CHG: adding new field to m1qn3 inversions (initial cost function ... Fri, 19 May 2023 11:46:49 GMT Mathieu Morlighem [27765] * issm/trunk-jpl/src/m/modeldata/interpMouginotAntTimeSeries1973to2018.m (modified) CHG: allow for any vector as time stamps Fri, 19 May 2023 00:12:10 GMT schlegel [27764] * issm/trunk-jpl/src/m/classes/clusters/pfe.m (modified) CHG: pfe update for toss4 Thu, 18 May 2023 23:58:03 GMT schlegel [27763] * issm/trunk-jpl/externalpackages/boost/install-1.55-pleiades.sh (modified) CHG: build with new toss4 Thu, 18 May 2023 22:12:14 GMT jdquinn [27762] * issm/trunk-jpl/externalpackages/gmt/install-6-linux-static.sh (modified) * issm/trunk-jpl/externalpackages/gmt/install-6-mac-static.sh (modified) * issm/trunk-jpl/externalpackages/netcdf/install-4.7-parallel-static-with_tests.sh (modified) * issm/trunk-jpl/externalpackages/netcdf/install-4.7-parallel-static.sh (modified) * issm/trunk-jpl/externalpackages/netcdf/install-4.7-parallel-with_tests.sh (modified) * issm/trunk-jpl/externalpackages/netcdf/install-4.7-parallel.sh (modified) * issm/trunk-jpl/externalpackages/netcdf/install-4.7-with_tests.sh (modified) * issm/trunk-jpl/externalpackages/netcdf/install-4.7.sh (modified) CHG: Working towards static linking of lcurl and hdf5 libs to ... Thu, 18 May 2023 00:01:33 GMT jdquinn [27761] * issm/trunk-jpl/externalpackages/gmt/install-6-linux-static.sh (modified) * issm/trunk-jpl/externalpackages/gmt/install-6-mac-static.sh (modified) CHG: Need to explicitly link to libhdf5 Wed, 17 May 2023 23:48:32 GMT jdquinn [27760] * issm/trunk-jpl/externalpackages/petsc/install-3.14-linux-static.sh (modified) * issm/trunk-jpl/externalpackages/petsc/install-3.17-linux-static.sh (modified) CHG: Newer versions of PETSc do not use configure.py; formatting Wed, 17 May 2023 19:44:53 GMT jdquinn [27759] * issm/trunk-jpl/externalpackages/petsc/install-3.17-linux-static.sh (copied) ADD: New install script Wed, 17 May 2023 18:03:26 GMT Mathieu Morlighem [27758] * issm/trunk-jpl/src/c/cores/controladm1qn3_core.cpp (modified) * issm/trunk-jpl/src/c/cores/controlm1qn3_core.cpp (modified) * issm/trunk-jpl/src/c/shared/Enum/Enum.vim (modified) * issm/trunk-jpl/src/c/shared/Enum/EnumDefinitions.h (modified) * issm/trunk-jpl/src/c/shared/Enum/EnumToStringx.cpp (modified) * issm/trunk-jpl/src/c/shared/Enum/Enumjl.vim (modified) * issm/trunk-jpl/src/c/shared/Enum/StringToEnumx.cpp (modified) CHG: preparing for new expected initial decrease in J Tue, 16 May 2023 21:41:24 GMT jdquinn [27757] * issm/trunk-jpl/m4/issm_options.m4 (modified) * issm/trunk-jpl/src/c/modules/QmuStatisticsx/QmuStatisticsx.cpp (modified) BUG: Resolved blocking of certain runtime errors under macOS; typos Tue, 16 May 2023 12:47:13 GMT Mathieu Morlighem [27756] * issm/trunk-jpl/src/c/classes/Params/BoolParam.h (modified) * issm/trunk-jpl/src/c/classes/Params/ControlParam.cpp (modified) * issm/trunk-jpl/src/c/classes/Params/ControlParam.h (modified) * issm/trunk-jpl/src/c/classes/Params/DataSetParam.h (modified) * issm/trunk-jpl/src/c/classes/Params/DoubleMatArrayParam.h (modified) * issm/trunk-jpl/src/c/classes/Params/DoubleMatParam.h (modified) * issm/trunk-jpl/src/c/classes/Params/DoubleParam.h (modified) * issm/trunk-jpl/src/c/classes/Params/DoubleVecParam.h (modified) * issm/trunk-jpl/src/c/classes/Params/FileParam.h (modified) * issm/trunk-jpl/src/c/classes/Params/GenericParam.h (modified) * issm/trunk-jpl/src/c/classes/Params/IntMatParam.h (modified) * issm/trunk-jpl/src/c/classes/Params/IntParam.h (modified) * issm/trunk-jpl/src/c/classes/Params/IntVecParam.h (modified) * issm/trunk-jpl/src/c/classes/Params/MatrixParam.h (modified) * issm/trunk-jpl/src/c/classes/Params/Param.h (modified) * issm/trunk-jpl/src/c/classes/Params/Parameters.cpp (modified) * issm/trunk-jpl/src/c/classes/Params/Parameters.h (modified) * issm/trunk-jpl/src/c/classes/Params/StringArrayParam.h (modified) * issm/trunk-jpl/src/c/classes/Params/StringParam.h (modified) * issm/trunk-jpl/src/c/classes/Params/TransientArrayParam.h (modified) * issm/trunk-jpl/src/c/classes/Params/TransientParam.h (modified) * issm/trunk-jpl/src/c/classes/Params/VectorParam.h (modified) * issm/trunk-jpl/src/c/cores/controladm1qn3_core.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/Control/UpdateElementsAndMaterialsControl.cpp (modified) NEW: added transient control inputs. fully validated Tue, 16 May 2023 11:49:10 GMT Mathieu Morlighem [27755] * issm/trunk-jpl/test/NightlyRun/test3206.m (modified) CHG: fixing number of tolerances Mon, 15 May 2023 23:07:54 GMT jdquinn [27754] * issm/trunk-jpl/jenkins/mac-intel-solid_earth (modified) * issm/trunk-jpl/jenkins/ross-debian_linux-solid_earth (modified) CHG: Attempting to standardize test suite exclusions for Solid Earth Mon, 15 May 2023 23:04:47 GMT jdquinn [27753] * issm/trunk-jpl/test/NightlyRun/test2101.py (modified) BUG: Fix for pickle loading error Mon, 15 May 2023 22:56:29 GMT jdquinn [27752] * issm/trunk-jpl/src/m/coordsystems/gmtmask.m (modified) * issm/trunk-jpl/src/m/coordsystems/gmtmask.py (modified) BUG: Newer versions of GMT print warnings to error out Mon, 15 May 2023 17:53:07 GMT Mathieu Morlighem [27751] * issm/trunk-jpl/test/NightlyRun/test3206.m (modified) CHG: relaxing tolerances Sat, 13 May 2023 06:08:06 GMT Eric.Larour [27750] * issm/branches/trunk-larour-SLPS2022/src/m/classes/qmu.m (modified) * issm/branches/trunk-larour-SLPS2022/src/m/classes/qmu/continuous_design.m (modified) * issm/branches/trunk-larour-SLPS2022/src/m/classes/qmu/normal_uncertain.m (modified) * issm/branches/trunk-larour-SLPS2022/src/m/qmu/dakota_m_write.m (modified) * issm/branches/trunk-larour-SLPS2022/src/m/qmu/postqmu.m (modified) * issm/branches/trunk-larour-SLPS2022/src/m/qmu/preqmu.m (modified) * issm/branches/trunk-larour-SLPS2022/src/m/qmu/setupdesign/QmuSetupVariables.m (modified) * issm/branches/trunk-larour-SLPS2022/src/m/qmu/vlist_write.m (modified) * issm/branches/trunk-larour-SLPS2022/src/m/solve/loadresultsfromcluster.m (modified) CHG: added continuous design. Sat, 13 May 2023 00:59:38 GMT Mathieu Morlighem [27749] * issm/trunk-jpl/jenkins/ross-debian_linux-codipack (modified) CHG: one more test for CoDi Sat, 13 May 2023 00:58:52 GMT Mathieu Morlighem [27748] * issm/trunk-jpl/test/Archives/Archive3206.arch (added) * issm/trunk-jpl/test/NightlyRun/test3206.m (added) CHG: new AD test Fri, 12 May 2023 21:23:25 GMT jdquinn [27747] * issm/trunk-jpl/test/NightlyRun/test2003.py (modified) * issm/trunk-jpl/test/NightlyRun/test2005.py (modified) * issm/trunk-jpl/test/NightlyRun/test2010.py (modified) BUG: Fix for pickle loading error Fri, 12 May 2023 21:16:05 GMT jdquinn [27746] * issm/trunk-jpl/test/NightlyRun/test2002.py (modified) BUG: Testing fix for pickle loading error Fri, 12 May 2023 20:59:38 GMT jdquinn [27745] * issm/trunk-jpl/test/NightlyRun/test2002.py (modified) BUG: Testing fix for pickle loading error Fri, 12 May 2023 20:44:31 GMT jdquinn [27744] * issm/trunk-jpl/src/m/classes/autodiff.py (modified) * issm/trunk-jpl/src/m/classes/independent.m (modified) * issm/trunk-jpl/src/m/classes/independent.py (modified) CHG: MATLAB -> Python; typo Fri, 12 May 2023 04:26:36 GMT jdquinn [27743] * issm/trunk-jpl/test/NightlyRun/runme.py (modified) BUG: Parsing tests under Python 3 Thu, 11 May 2023 21:12:15 GMT jdquinn [27742] * issm/trunk-jpl/jenkins/ross-debian_linux-adolc-ampion (modified) * issm/trunk-jpl/jenkins/ross-debian_linux-binaries-matlab (modified) * issm/trunk-jpl/jenkins/ross-debian_linux-binaries-python-3 (modified) * issm/trunk-jpl/jenkins/ross-debian_linux-codipack (modified) * issm/trunk-jpl/jenkins/ross-debian_linux-dakota (modified) * issm/trunk-jpl/jenkins/ross-debian_linux-full (modified) * issm/trunk-jpl/jenkins/ross-debian_linux-full-mplapack (modified) * issm/trunk-jpl/jenkins/ross-debian_linux-full-valgrind (modified) * issm/trunk-jpl/jenkins/ross-debian_linux-gia (modified) * issm/trunk-jpl/jenkins/ross-debian_linux-iceocean (modified) * issm/trunk-jpl/jenkins/ross-debian_linux-python (modified) * issm/trunk-jpl/jenkins/ross-debian_linux-solid_earth (modified) CHG: Correcting ADOL-C config; updating to PETSc 3.17 on all Debian ... Thu, 11 May 2023 18:41:00 GMT jdquinn [27741] * issm/trunk-jpl/jenkins/ross-debian_linux-basic (modified) CHG: Trying PETSc 3.17 with Ubuntu basic build Thu, 11 May 2023 17:59:40 GMT Mathieu Morlighem [27740] * issm/trunk-jpl/externalpackages/codipack/install.sh (modified) * issm/trunk-jpl/externalpackages/medipack/install.sh (modified) * issm/trunk-jpl/externalpackages/petsc/install-3.19-discovery.sh (added) CHG: codipack and medipack cannot be downloaded with svn anymore, ... Wed, 10 May 2023 20:55:38 GMT jdquinn [27739] * issm/trunk-jpl/externalpackages/petsc/install-3.17-linux.sh (modified) * issm/trunk-jpl/jenkins/ross-debian_linux-adolc-ampioff (modified) * issm/trunk-jpl/jenkins/ross-debian_linux-adolc-ampion (modified) BUG: Trying PETSc 3.17 with ADOL-C Wed, 10 May 2023 20:23:22 GMT Mathieu Morlighem [27738] * issm/trunk-jpl/src/c/cores/love_core.cpp (modified) CHG: trying to recast variable to make ADOLC happy Wed, 10 May 2023 18:15:49 GMT Mathieu Morlighem [27737] * issm/trunk-jpl/src/c/cores/love_core.cpp (modified) BUG: reverting for now Wed, 10 May 2023 17:20:37 GMT Mathieu Morlighem [27736] * issm/trunk-jpl/src/c/cores/love_core.cpp (modified) BUG: z should be doubletype and not IssmDouble Wed, 10 May 2023 04:40:07 GMT jdquinn [27735] * issm/trunk-jpl/m4/issm_options.m4 (modified) * issm/trunk-jpl/src/c/Makefile.am (modified) BUG: Fix for @rpath not being set for libgfortran on newer versions ... Mon, 08 May 2023 17:22:02 GMT Mathieu Morlighem [27734] * issm/trunk-jpl/test/Archives/Archive3201.arch (modified) * issm/trunk-jpl/test/Archives/Archive3202.arch (modified) * issm/trunk-jpl/test/Archives/Archive3203.arch (modified) * issm/trunk-jpl/test/Archives/Archive3204.arch (modified) * issm/trunk-jpl/test/Archives/Archive3205.arch (modified) CHG: new archives now that gradient is more robust Mon, 08 May 2023 15:50:52 GMT Mathieu Morlighem [27733] * issm/trunk-jpl/src/c/datastructures/DataSet.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/CreateOutputDefinitions.cpp (modified) * issm/trunk-jpl/src/m/classes/cfsurfacesquaretransient.m (modified) CHG: keeping only strings for what is really needed Mon, 08 May 2023 14:00:31 GMT Mathieu Morlighem [27732] * issm/trunk-jpl/src/c/cores/controladm1qn3_core.cpp (modified) * issm/trunk-jpl/src/c/cores/transient_core.cpp (modified) CHG: better way to register output J, NR will fail and new archives ... Mon, 08 May 2023 13:59:56 GMT Mathieu Morlighem [27731] * issm/trunk-jpl/src/c/modules/ModelProcessorx/Control/UpdateElementsAndMaterialsControl.cpp (modified) CHG: fixing memory leak Fri, 05 May 2023 14:37:53 GMT Mathieu Morlighem [27730] * issm/trunk-jpl/src/c/classes/Params/ControlParam.cpp (modified) BUG: memory leak Fri, 05 May 2023 01:01:38 GMT Mathieu Morlighem [27729] * issm/trunk-jpl/src/m/classes/autodiff.m (modified) * issm/trunk-jpl/src/m/classes/cfsurfacesquaretransient.m (added) * issm/trunk-jpl/src/m/classes/dependent.m (modified) CHG: no need to use indices anymore Fri, 05 May 2023 00:45:09 GMT Mathieu Morlighem [27728] * issm/trunk-jpl/src/c/classes/Cfdragcoeffabsgrad.cpp (modified) * issm/trunk-jpl/src/c/classes/Cfdragcoeffabsgrad.h (modified) * issm/trunk-jpl/src/c/classes/Cflevelsetmisfit.cpp (modified) * issm/trunk-jpl/src/c/classes/Cflevelsetmisfit.h (modified) * issm/trunk-jpl/src/c/classes/Cfrheologybbarabsgrad.cpp (modified) * issm/trunk-jpl/src/c/classes/Cfrheologybbarabsgrad.h (modified) * issm/trunk-jpl/src/c/classes/Cfsurfacelogvel.cpp (modified) * issm/trunk-jpl/src/c/classes/Cfsurfacelogvel.h (modified) * issm/trunk-jpl/src/c/classes/Cfsurfacesquare.cpp (modified) * issm/trunk-jpl/src/c/classes/Cfsurfacesquare.h (modified) * issm/trunk-jpl/src/c/classes/Cfsurfacesquaretransient.cpp (modified) * issm/trunk-jpl/src/c/classes/DependentObject.cpp (modified) * issm/trunk-jpl/src/c/classes/DependentObject.h (modified) * issm/trunk-jpl/src/c/classes/FemModel.cpp (modified) * issm/trunk-jpl/src/c/cores/controladm1qn3_core.cpp (modified) * issm/trunk-jpl/src/c/cores/controlvalidation_core.cpp (modified) * issm/trunk-jpl/src/c/cores/transient_core.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/Autodiff/CreateParametersAutodiff.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/CreateOutputDefinitions.cpp (modified) NEW: moving J to cost function itself instead of being weirdly handled Thu, 04 May 2023 23:43:32 GMT barkaoui [27727] * issm/trunk-jpl/jenkins/ross-debian_linux-adolc-ampion (modified) change updating to test of adolc with SeaLevel Thu, 04 May 2023 23:41:01 GMT barkaoui [27726] * issm/trunk-jpl/src/c/analyses/SealevelchangeAnalysis.cpp (modified) * issm/trunk-jpl/src/c/modules/GiaDeflectionCorex/GiaDeflectionCorex.cpp (modified) Bug:fixing adolc sealevelcore recast bug Thu, 04 May 2023 19:49:11 GMT Mathieu Morlighem [27725] * issm/trunk-jpl/src/c/classes/DependentObject.cpp (modified) * issm/trunk-jpl/src/c/classes/DependentObject.h (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/Autodiff/CreateParametersAutodiff.cpp (modified) CHG: removing index field, not used by anyone Thu, 04 May 2023 18:29:48 GMT Mathieu Morlighem [27724] * issm/trunk-jpl/src/c/classes/Elements/Penta.cpp (modified) * issm/trunk-jpl/src/c/classes/Elements/Tria.cpp (modified) * issm/trunk-jpl/src/c/classes/Params/ControlParam.cpp (modified) * issm/trunk-jpl/src/c/classes/Params/Parameters.cpp (modified) * issm/trunk-jpl/src/c/classes/Params/Parameters.h (modified) * issm/trunk-jpl/src/c/cores/controladm1qn3_core.cpp (modified) * issm/trunk-jpl/src/c/cores/transient_core.cpp (modified) * issm/trunk-jpl/src/c/modules/ControlInputSetGradientx/ControlInputSetGradientx.cpp (modified) * issm/trunk-jpl/src/c/modules/SetControlInputsFromVectorx/SetControlInputsFromVectorx.cpp (modified) CHG: making gradient of param output Thu, 04 May 2023 18:29:39 GMT jdquinn [27723] * issm/trunk-jpl/jenkins/mac-intel-basic (modified) * issm/trunk-jpl/jenkins/windows (deleted) * issm/trunk-jpl/jenkins/windows-par (deleted) * issm/trunk-jpl/jenkins/windows_static (deleted) * issm/trunk-jpl/jenkins/windows_test (deleted) CHG: Testing if all tests run on Intel-based Mac; clean up Thu, 04 May 2023 17:53:45 GMT Mathieu Morlighem [27722] * issm/trunk-jpl/src/c/classes/Params/ControlParam.cpp (modified) * issm/trunk-jpl/src/c/cores/controladm1qn3_core.cpp (modified) CHG: fixing upper and lower bounds Wed, 03 May 2023 20:41:37 GMT Mathieu Morlighem [27721] * issm/trunk-jpl/src/c/classes/Cfsurfacesquaretransient.cpp (modified) * issm/trunk-jpl/src/c/classes/Cfsurfacesquaretransient.h (modified) CHG: done with transient cost function Wed, 03 May 2023 19:08:06 GMT Mathieu Morlighem [27720] * issm/trunk-jpl/src/c/classes/Elements/PentaRef.cpp (modified) CHG: added P1Bubble back for NR Wed, 03 May 2023 19:01:31 GMT Mathieu Morlighem [27719] * issm/trunk-jpl/src/c/classes/Params/ControlParam.cpp (modified) * issm/trunk-jpl/src/c/classes/Params/ControlParam.h (modified) * issm/trunk-jpl/src/c/classes/Params/Param.h (modified) * issm/trunk-jpl/src/c/classes/Params/Parameters.cpp (modified) * issm/trunk-jpl/src/c/classes/Params/Parameters.h (modified) * issm/trunk-jpl/src/c/cores/controladm1qn3_core.cpp (modified) * issm/trunk-jpl/src/c/modules/GetVectorFromControlInputsx/GetVectorFromControlInputsx.cpp (modified) CHG: partially allowing control inputs+params Wed, 03 May 2023 17:39:39 GMT Mathieu Morlighem [27718] * issm/trunk-jpl/src/c/classes/Elements/PentaRef.cpp (modified) BUG: make PentaRef.cpp compile with AD Wed, 03 May 2023 12:48:11 GMT Mathieu Morlighem [27717] * issm/trunk-jpl/src/c/analyses/MasstransportAnalysis.cpp (modified) * issm/trunk-jpl/src/c/classes/Elements/Element.cpp (modified) * issm/trunk-jpl/src/c/classes/Elements/Element.h (modified) * issm/trunk-jpl/src/c/classes/IoModel.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/Control/UpdateElementsAndMaterialsControl.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/CreateOutputDefinitions.cpp (modified) CHG: working on implementing transient surface square Mon, 01 May 2023 23:48:38 GMT Mathieu Morlighem [27716] * issm/trunk-jpl/src/c/cores/controltao_core.cpp (modified) CHG: enabling TAO for PETSc 3.17+ Mon, 01 May 2023 23:27:11 GMT schlegel [27715] * issm/trunk-jpl/src/c/modules/SurfaceMassBalancex/Gembx.cpp (modified) BUG: use S2 instead of S1 in soot loading albedo calculation for > 1 ... Thu, 27 Apr 2023 21:08:32 GMT badgeley [27714] * issm/trunk-jpl/src/m/contrib/badgeley/interpICESat2ATL1415.m (modified) CHG: updated documentation for interpICESat2ATL1415.m Thu, 27 Apr 2023 20:26:28 GMT jdquinn [27713] * issm/trunk-jpl/test/NightlyRun/test243.m (modified) * issm/trunk-jpl/test/NightlyRun/test243.py (modified) * issm/trunk-jpl/test/NightlyRun/test252.m (modified) * issm/trunk-jpl/test/NightlyRun/test252.py (modified) * issm/trunk-jpl/test/NightlyRun/test253.m (modified) * issm/trunk-jpl/test/NightlyRun/test253.py (modified) * issm/trunk-jpl/test/NightlyRun/test518.m (modified) * issm/trunk-jpl/test/NightlyRun/test518.py (modified) * issm/trunk-jpl/test/NightlyRun/test540.m (modified) * issm/trunk-jpl/test/NightlyRun/test540.py (modified) CHG: Eased tolerances Thu, 27 Apr 2023 18:47:44 GMT jdquinn [27712] * issm/trunk-jpl/jenkins/jenkins.sh (modified) * issm/trunk-jpl/jenkins/mac-silicon-basic (modified) * issm/trunk-jpl/packagers/linux/package-issm-linux-binaries-matlab.sh (modified) * issm/trunk-jpl/packagers/mac/package-issm-mac-binaries-matlab.sh (modified) * issm/trunk-jpl/packagers/mac/test-issm-mac-binaries-matlab.sh (modified) CHG: Correcting Silicon environment to allow for MATLAB tests; ... Thu, 27 Apr 2023 18:36:28 GMT badgeley [27711] * issm/trunk-jpl/src/m/contrib/badgeley (added) * issm/trunk-jpl/src/m/contrib/badgeley/interpICESat2ATL1415.m (added) NEW: interp script for ICESat2 ATL14/15 data Thu, 27 Apr 2023 18:28:38 GMT badgeley [27710] * issm/trunk-jpl/src/m/classes/clusters/discovery.m (modified) CHG: allow for formatting of run times longer than 24 hours Thu, 27 Apr 2023 00:17:41 GMT Mathieu Morlighem [27709] * issm/trunk-jpl/src/c/Makefile.am (modified) * issm/trunk-jpl/src/c/classes/Cfsurfacesquaretransient.cpp (added) * issm/trunk-jpl/src/c/classes/Cfsurfacesquaretransient.h (added) * issm/trunk-jpl/src/c/classes/IoModel.cpp (modified) * issm/trunk-jpl/src/c/classes/IoModel.h (modified) * issm/trunk-jpl/src/c/classes/classes.h (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/CreateOutputDefinitions.cpp (modified) * issm/trunk-jpl/src/c/shared/Enum/Enum.vim (modified) * issm/trunk-jpl/src/c/shared/Enum/EnumDefinitions.h (modified) * issm/trunk-jpl/src/c/shared/Enum/EnumToStringx.cpp (modified) * issm/trunk-jpl/src/c/shared/Enum/Enumjl.vim (modified) * issm/trunk-jpl/src/c/shared/Enum/StringToEnumx.cpp (modified) CHG: adding new transient cost function, not finished just yet Wed, 26 Apr 2023 21:32:30 GMT jdquinn [27708] * issm/trunk-jpl/jenkins/jenkins.sh (modified) * issm/trunk-jpl/scripts/DownloadExamplesDatasets.sh (modified) CHG: Download examples datasets if they are not already present when ... Wed, 26 Apr 2023 20:35:13 GMT Cheng Gong [27707] * issm/trunk-jpl/src/wrappers/matlab/io/FetchMatlabData.cpp (modified) BUG: fix seg fault when reading in sparse matrix Tue, 25 Apr 2023 03:04:29 GMT jdquinn [27706] * issm/trunk-jpl/etc/environment.sh (modified) * issm/trunk-jpl/externalpackages/dakota/install-6.2-mac.sh (modified) CHG: Issues with Dakota on Intel-based Mac node Tue, 25 Apr 2023 00:30:37 GMT jdquinn [27705] * issm/trunk-jpl/externalpackages/dakota/install-6.2-mac.sh (modified) CHG: Issues with Dakota on Intel-based Mac node Mon, 24 Apr 2023 15:12:10 GMT Mathieu Morlighem [27704] * issm/trunk-jpl/src/m/plot/plot_manager.m (modified) CHG: should not call 2x subplot Mon, 24 Apr 2023 15:10:27 GMT Mathieu Morlighem [27703] * issm/trunk-jpl/src/c/classes/Inputs/ControlInput.cpp (modified) * issm/trunk-jpl/src/c/classes/Inputs/ControlInput.h (modified) * issm/trunk-jpl/src/c/classes/Inputs/TriaInput.cpp (modified) CHG: making input averaging work Fri, 21 Apr 2023 20:18:10 GMT jdquinn [27702] * issm/trunk-jpl/jenkins/mac-intel-dakota (modified) * issm/trunk-jpl/jenkins/mac-intel-examples (modified) * issm/trunk-jpl/jenkins/mac-intel-full (modified) * issm/trunk-jpl/jenkins/mac-intel-solid_earth (modified) * issm/trunk-jpl/jenkins/mac-silicon-basic (modified) * issm/trunk-jpl/jenkins/mac-silicon-dakota (copied) * issm/trunk-jpl/jenkins/mac-silicon-examples (modified) * issm/trunk-jpl/jenkins/mac-silicon-full (modified) CHG: Adding Dakota build for Silicon-based Macs; documentation clean up