#
# ChangeLog for /
#
# Generated by Trac 1.4.3
# 04/29/25 19:43:27

Sat, 20 Jun 2020 05:46:58 GMT Eric.Larour [25086]
	* issm/trunk-jpl/src/m/classes/qmu.m (modified)

	CHG: super important change! Check that Dakota variables are declared ...


Sat, 20 Jun 2020 05:24:11 GMT Eric.Larour [25085]
	* issm/trunk-jpl/src/m/classes/giamme.m (modified)

	CHG: fixing name of marshalled model id.


Sat, 20 Jun 2020 05:21:22 GMT Eric.Larour [25084]
	* issm/trunk-jpl/src/c/modules/InputUpdateFromDakotax/InputUpdateFromDakotax.cpp (modified)

	CHG: some verbosing.


Sat, 20 Jun 2020 03:47:41 GMT Eric.Larour [25083]
	* issm/trunk-jpl/src/m/classes/qmu/normal_uncertain.m (modified)

	CHG: removed check.


Sat, 20 Jun 2020 01:20:24 GMT Eric.Larour [25082]
	* issm/trunk-jpl/src/m/classes/giamme.m (modified)

	CHG: rates should be in mm/yr.


Sat, 20 Jun 2020 01:20:06 GMT Eric.Larour [25081]
	* issm/trunk-jpl/src/m/classes/qmu.m (modified)

	CHG: warning message not needed


Sat, 20 Jun 2020 00:51:42 GMT Eric.Larour [25080]
	* issm/trunk-jpl/src/c/analyses/GiaAnalysis.cpp (modified)
	* issm/trunk-jpl/src/c/cores/gia_core.cpp (modified)
	* issm/trunk-jpl/src/m/classes/giamme.m (modified)

	CHG: scaling of Gia inputs from mm/yr to m/yr into the ISSM C++ SI ...


Sat, 20 Jun 2020 00:49:13 GMT Eric.Larour [25079]
	* issm/trunk-jpl/src/c/classes/IoModel.cpp (modified)

	CHG: added compressed matrix in the FetchDataToDataSet routine.


Sat, 20 Jun 2020 00:48:40 GMT Eric.Larour [25078]
	* issm/trunk-jpl/src/m/classes/qmu/histogram_bin_uncertain.m (modified)

	CHG: missing methods to make histogram_bin_uncertain compatible with ...


Sat, 20 Jun 2020 00:38:56 GMT Eric.Larour [25077]
	* issm/trunk-jpl/test/NightlyRun/test2004.m (modified)

	CHG: changed name for NGia and UGia in the requested outputs.


Fri, 19 Jun 2020 20:46:09 GMT Eric.Larour [25076]
	* issm/trunk-jpl/src/m/partition/partitioner.m (modified)
	* issm/trunk-jpl/test/NightlyRun/test418.m (modified)

	CHG: adapted partitioner for AreaAverage ...


Fri, 19 Jun 2020 19:22:34 GMT Eric.Larour [25075]
	* issm/trunk-jpl/test/Par/GiaIvinsBenchmarksAB.par (modified)
	* issm/trunk-jpl/test/Par/GiaIvinsBenchmarksAB.py (modified)

	CHG: initializing giaivins class.


Fri, 19 Jun 2020 19:19:25 GMT Eric.Larour [25074]
	* issm/trunk-jpl/src/m/classes/model.m (modified)

	CHG: collapse routine needs to branch according to gia class.


Fri, 19 Jun 2020 18:48:09 GMT jdquinn [25073]
	* issm/trunk-jpl/externalpackages/netcdf/install-4.7-parallel-static-with_tests.sh (modified)
	* issm/trunk-jpl/externalpackages/netcdf/install-4.7-parallel-static.sh (modified)
	* issm/trunk-jpl/externalpackages/netcdf/install-4.7-parallel-with_tests.sh (modified)
	* issm/trunk-jpl/externalpackages/netcdf/install-4.7-parallel.sh (modified)
	* issm/trunk-jpl/externalpackages/netcdf/install-4.7-with_tests.sh (modified)
	* issm/trunk-jpl/externalpackages/netcdf/install-4.7.sh (modified)

	CHG: Cleanup


Fri, 19 Jun 2020 18:03:54 GMT jdquinn [25072]
	* issm/trunk-jpl/src/m/classes/qmu/normal_uncertain.m (modified)

	CHG: Removed sanity checks


Fri, 19 Jun 2020 17:49:08 GMT Eric.Larour [25071]
	* issm/trunk-jpl/test/NightlyRun/test2003.m (modified)
	* issm/trunk-jpl/test/NightlyRun/test2004.m (modified)
	* issm/trunk-jpl/test/NightlyRun/test2010.m (modified)
	* issm/trunk-jpl/test/NightlyRun/test2111.m (modified)
	* issm/trunk-jpl/test/NightlyRun/test2112.m (modified)
	* issm/trunk-jpl/test/NightlyRun/test2113.m (modified)

	CHG: slr has not gia fields anymore.


Fri, 19 Jun 2020 16:55:56 GMT Eric.Larour [25070]
	* issm/trunk-jpl/test/NightlyRun/test2001.m (modified)
	* issm/trunk-jpl/test/NightlyRun/test2002.m (modified)
	* issm/trunk-jpl/test/NightlyRun/test2051.m (modified)
	* issm/trunk-jpl/test/NightlyRun/test2052.m (modified)
	* issm/trunk-jpl/test/NightlyRun/test2053.m (modified)
	* issm/trunk-jpl/test/NightlyRun/test2071.m (modified)
	* issm/trunk-jpl/test/NightlyRun/test2072.m (modified)
	* issm/trunk-jpl/test/NightlyRun/test2073.m (modified)
	* issm/trunk-jpl/test/NightlyRun/test2081.m (modified)
	* issm/trunk-jpl/test/NightlyRun/test2082.m (modified)
	* issm/trunk-jpl/test/NightlyRun/test2083.m (modified)
	* issm/trunk-jpl/test/Par/GiaIvinsBenchmarksAB.par (modified)
	* issm/trunk-jpl/test/Par/GiaIvinsBenchmarksCD.par (modified)
	* issm/trunk-jpl/test/Par/SquareSheetConstrained.par (modified)

	CHG: updates of the GIA enums, and giamme class.


Fri, 19 Jun 2020 03:42:29 GMT Eric.Larour [25069]
	* issm/trunk-jpl/src/c/cores/sealevelchange_core.cpp (modified)

	CHG: if running sealevelchange_core only, then run gia_core too.


Fri, 19 Jun 2020 03:03:50 GMT jdquinn [25068]
	* issm/trunk-jpl/src/m/classes/boundary.m (modified)

	BUG: Unbalanced parens; unclosed conditionals


Fri, 19 Jun 2020 02:26:38 GMT Eric.Larour [25067]
	* issm/trunk-jpl/m4/analyses.m4 (modified)
	* issm/trunk-jpl/m4/issm_options.m4 (modified)

	CHG: replacing GIAIVINS with GIA


Fri, 19 Jun 2020 01:48:50 GMT Eric.Larour [25066]
	* issm/trunk-jpl/src/c/Makefile.am (modified)
	* issm/trunk-jpl/src/c/analyses/EnumToAnalysis.cpp (modified)
	* issm/trunk-jpl/src/c/analyses/GiaAnalysis.cpp (moved)
	* issm/trunk-jpl/src/c/analyses/GiaAnalysis.h (moved)
	* issm/trunk-jpl/src/c/analyses/SealevelriseAnalysis.cpp (modified)
	* issm/trunk-jpl/src/c/analyses/analyses.h (modified)
	* issm/trunk-jpl/src/c/classes/Elements/Element.h (modified)
	* issm/trunk-jpl/src/c/classes/Elements/Penta.cpp (modified)
	* issm/trunk-jpl/src/c/classes/Elements/Penta.h (modified)
	* issm/trunk-jpl/src/c/classes/Elements/Seg.h (modified)
	* issm/trunk-jpl/src/c/classes/Elements/Tetra.h (modified)
	* issm/trunk-jpl/src/c/classes/Elements/Tria.cpp (modified)
	* issm/trunk-jpl/src/c/classes/Elements/Tria.h (modified)
	* issm/trunk-jpl/src/c/classes/FemModel.cpp (modified)
	* issm/trunk-jpl/src/c/classes/FemModel.h (modified)
	* issm/trunk-jpl/src/c/cores/CorePointerFromSolutionEnum.cpp (modified)
	* issm/trunk-jpl/src/c/cores/gia_core.cpp (modified)
	* issm/trunk-jpl/src/c/cores/sealevelchange_core.cpp (modified)
	* issm/trunk-jpl/src/c/cores/transient_core.cpp (modified)
	* issm/trunk-jpl/src/c/modules/ModelProcessorx/CreateParameters.cpp (modified)
	* issm/trunk-jpl/src/c/shared/Enum/Enum.vim (modified)
	* issm/trunk-jpl/src/c/shared/Enum/EnumDefinitions.h (modified)
	* issm/trunk-jpl/src/c/shared/Enum/EnumToStringx.cpp (modified)
	* issm/trunk-jpl/src/c/shared/Enum/StringToEnumx.cpp (modified)
	* issm/trunk-jpl/src/c/shared/io/Marshalling/IoCodeConversions.cpp (modified)
	* issm/trunk-jpl/src/m/classes/giamme.m (modified)
	* issm/trunk-jpl/src/m/classes/model.m (modified)
	* issm/trunk-jpl/src/m/classes/slr.m (modified)

	CHG: moved GiaIvinsAnalysis to GiaAnalysis.
	Made giamme the default ...


Thu, 18 Jun 2020 23:01:39 GMT jdquinn [25065]
	* issm/trunk-jpl/src/m/classes/basin.m (modified)
	* issm/trunk-jpl/src/m/classes/basin.py (added)
	* issm/trunk-jpl/src/m/classes/boundary.m (modified)
	* issm/trunk-jpl/src/m/classes/boundary.py (added)
	* issm/trunk-jpl/src/m/classes/plotoptions.py (modified)
	* issm/trunk-jpl/src/m/classes/sealevelmodel.m (modified)
	* issm/trunk-jpl/src/m/classes/sealevelmodel.py (modified)
	* issm/trunk-jpl/src/m/coordsystems/gdaltransform.m (modified)
	* issm/trunk-jpl/src/m/coordsystems/gdaltransform.py (modified)
	* issm/trunk-jpl/src/m/coordsystems/laea.py (added)
	* issm/trunk-jpl/src/m/geometry/AboveGround.py (added)
	* issm/trunk-jpl/src/m/geometry/polyarea.py (added)
	* issm/trunk-jpl/src/m/mech/analyticaldamage.py (modified)
	* issm/trunk-jpl/src/m/mesh/meshintersect3d.py (modified)
	* issm/trunk-jpl/src/m/mesh/planet/gmsh/gmshplanet.py (modified)
	* issm/trunk-jpl/src/m/plot/applyoptions.m (modified)
	* issm/trunk-jpl/src/m/plot/applyoptions.py (modified)
	* issm/trunk-jpl/src/m/plot/plot_manager.m (modified)
	* issm/trunk-jpl/src/m/plot/plot_manager.py (modified)
	* issm/trunk-jpl/src/m/plot/plot_overlay.py (modified)
	* issm/trunk-jpl/src/m/plot/plot_unit.py (modified)
	* issm/trunk-jpl/src/m/plot/plotmodel.m (modified)
	* issm/trunk-jpl/src/m/plot/plotmodel.py (modified)
	* issm/trunk-jpl/src/m/qmu/helpers.py (modified)
	* issm/trunk-jpl/src/m/shp/shpread.m (modified)
	* issm/trunk-jpl/src/m/shp/shpread.py (added)
	* issm/trunk-jpl/src/m/shp/shpwrite.m (modified)
	* issm/trunk-jpl/src/m/shp/shpwrite.py (added)

	CHG: Saving progress on SLR/Solid Earth translation


Thu, 18 Jun 2020 18:05:06 GMT jdquinn [25064]
	* issm/trunk-jpl/src/m/coordsystems/epsg2proj.m (modified)

	BUG: Quoting and escaping


Thu, 18 Jun 2020 12:42:29 GMT bdef [25063]
	* issm/trunk-jpl/src/m/contrib/defleurian/netCDF/export_netCDF.py (modified)
	* issm/trunk-jpl/src/m/io/loadvars.py (modified)

	CHG:last tweaks on netCDF IO


Thu, 18 Jun 2020 07:59:31 GMT bdef [25062]
	* issm/trunk-jpl/src/m/contrib/defleurian/netCDF/export_netCDF.py (modified)
	* issm/trunk-jpl/src/m/io/loadvars.py (modified)

	CHG:optimisation of the netcdf i/o


Thu, 18 Jun 2020 07:06:01 GMT Eric.Larour [25061]
	* issm/trunk-jpl/src/m/contrib/larour/ismip6.m (modified)

	CHG: additional capabilities for ismip6 class.


Thu, 18 Jun 2020 07:05:28 GMT Eric.Larour [25060]
	* issm/trunk-jpl/src/c/analyses/SealevelriseAnalysis.cpp (modified)
	* issm/trunk-jpl/src/c/cores/sealevelchange_core.cpp (modified)
	* issm/trunk-jpl/src/c/shared/Enum/Enum.vim (modified)
	* issm/trunk-jpl/src/c/shared/Enum/EnumDefinitions.h (modified)
	* issm/trunk-jpl/src/c/shared/Enum/EnumToStringx.cpp (modified)
	* issm/trunk-jpl/src/c/shared/Enum/StringToEnumx.cpp (modified)

	CHG: added support for giamme class. Tested with qmu runs.


Thu, 18 Jun 2020 07:04:45 GMT Eric.Larour [25059]
	* issm/trunk-jpl/src/m/modules/ExpToLevelSet.m (modified)

	CHG: allows for shapefiles.


Thu, 18 Jun 2020 07:04:23 GMT Eric.Larour [25058]
	* issm/trunk-jpl/src/m/plot/plot_coastlines.m (modified)
	* issm/trunk-jpl/src/m/plot/processmesh.m (modified)

	CHG: added latlon plot for 3Dsurface meshes.


Thu, 18 Jun 2020 07:03:51 GMT Eric.Larour [25057]
	* issm/trunk-jpl/src/m/qmu/postqmu.m (modified)

	CHG: added a print statement to track download of multiple files in ...


Thu, 18 Jun 2020 07:03:08 GMT Eric.Larour [25056]
	* issm/trunk-jpl/src/m/classes/giacaron.m (modified)
	* issm/trunk-jpl/src/m/classes/giaivins.m (modified)
	* issm/trunk-jpl/src/m/classes/giamme.m (added)

	CHG: new giamme multi-model ensemble class, works quite like the ...


Thu, 18 Jun 2020 07:02:21 GMT Eric.Larour [25055]
	* issm/trunk-jpl/src/m/classes/dsl.m (modified)

	CHG: correcting an error in the marshall.


Thu, 18 Jun 2020 04:33:26 GMT Mathieu Morlighem [25054]
	* issm/trunk-jpl/src/wrappers/CoordTransform/CoordTransform.cpp (modified)

	CHG: need to define ACCEPT_USE_OF_DEPRECATED_PROJ_API_H with new ...


Thu, 18 Jun 2020 04:33:07 GMT Mathieu Morlighem [25053]
	* issm/trunk-jpl/src/c/modules/CoordinateSystemTransformx/CoordinateSystemTransformx.cpp (modified)

	CHG: need to define ACCEPT_USE_OF_DEPRECATED_PROJ_API_H with new ...


Thu, 18 Jun 2020 04:13:47 GMT Mathieu Morlighem [25052]
	* issm/trunk-jpl/src/wrappers/CoordTransform/CoordTransform.h (modified)

	BUG: wrong number of arguments


Thu, 18 Jun 2020 04:08:45 GMT jdquinn [25051]
	* issm/trunk-jpl/src/m/coordsystems/epsg2proj.m (modified)

	BUG: Indices fix


Thu, 18 Jun 2020 03:41:20 GMT jdquinn [25050]
	* issm/trunk-jpl/src/m/coordsystems/epsg2proj.m (modified)
	* issm/trunk-jpl/src/m/coordsystems/epsg2proj.py (modified)

	CHG: Now trimming newline from grep in piped system call; handling ...


Wed, 17 Jun 2020 21:55:00 GMT jdquinn [25049]
	* issm/trunk-jpl/jenkins/pine_island-mac-dakota (modified)
	* issm/trunk-jpl/jenkins/ross-debian_linux-dakota (modified)

	CHG: Disabling test418 until partitioner class can be refactored


Wed, 17 Jun 2020 21:44:10 GMT jdquinn [25048]
	* issm/trunk-jpl/jenkins/pine_island-mac-dakota (modified)
	* issm/trunk-jpl/jenkins/ross-debian_linux-dakota (modified)
	* issm/trunk-jpl/packagers/linux/package-issm-linux-binaries-with_dakota.sh (modified)
	* issm/trunk-jpl/packagers/mac/package-issm-mac-binaries-with_dakota.sh (modified)

	CHG: Disabling test418 until partitioner class can be refactored


Wed, 17 Jun 2020 21:38:15 GMT jdquinn [25047]
	* issm/trunk-jpl/src/m/partition/AreaAverageOntoPartition.py (modified)
	* issm/trunk-jpl/test/NightlyRun/test418.py (modified)

	CHG: Saving changes for later (test runs under Python, but not under ...


Wed, 17 Jun 2020 21:05:35 GMT jdquinn [25046]
	* issm/trunk-jpl/test/NightlyRun/test244.py (modified)

	BUG: nuv and uuv fields must now be np.ndarrays (after additional of ...


Wed, 17 Jun 2020 20:05:40 GMT jdquinn [25045]
	* issm/trunk-jpl/src/m/classes/qmu/uniform_uncertain.py (modified)

	BUG: ‘nuv’ -> ‘uuv’


Wed, 17 Jun 2020 19:13:40 GMT jdquinn [25044]
	* issm/trunk-jpl/src/m/classes/qmu/normal_uncertain.m (modified)
	* issm/trunk-jpl/src/m/classes/qmu/normal_uncertain.py (modified)
	* issm/trunk-jpl/src/m/qmu/preqmu.py (modified)
	* issm/trunk-jpl/test/NightlyRun/test218.m (modified)
	* issm/trunk-jpl/test/NightlyRun/test218.py (modified)
	* issm/trunk-jpl/test/NightlyRun/test235.py (modified)
	* issm/trunk-jpl/test/NightlyRun/test244.py (modified)
	* issm/trunk-jpl/test/NightlyRun/test250.py (modified)
	* issm/trunk-jpl/test/NightlyRun/test251.py (modified)
	* issm/trunk-jpl/test/NightlyRun/test412.py (modified)
	* issm/trunk-jpl/test/NightlyRun/test413.py (modified)
	* issm/trunk-jpl/test/NightlyRun/test414.py (modified)
	* issm/trunk-jpl/test/NightlyRun/test417.py (modified)

	BUG: Majority of fixes for Dakota Python tests; still need to fix ...


Wed, 17 Jun 2020 02:47:25 GMT Eric.Larour [25043]
	* issm/trunk-jpl/externalpackages/nearestSPD (added)
	* issm/trunk-jpl/externalpackages/nearestSPD/NearestSymmetricPositiveDefinite.zip (added)

	CHG: nearestSPD package.


Wed, 17 Jun 2020 02:43:58 GMT Eric.Larour [25042]
	* issm/trunk-jpl/externalpackages/geocode/geoCode.m (added)
	* issm/trunk-jpl/externalpackages/geocode/license.txt (added)

	CHG: diverse


Wed, 17 Jun 2020 02:42:32 GMT Eric.Larour [25041]
	* issm/trunk-jpl/src/m/classes/qmu.m (modified)
	* issm/trunk-jpl/src/m/qmu/dakota_in_data.m (modified)
	* issm/trunk-jpl/src/m/qmu/dakota_in_write.m (modified)
	* issm/trunk-jpl/src/m/qmu/preqmu.m (modified)

	CHG: adding correlatoin matrix.


Wed, 17 Jun 2020 02:32:08 GMT Eric.Larour [25040]
	* issm/trunk-jpl/etc/environment.csh (modified)

	CHG: updated environment.csh script for boost and other libraries ...


Tue, 16 Jun 2020 21:30:43 GMT Eric.Larour [25039]
	* issm/trunk-jpl/src/m/classes/clusters/pfe.m (modified)

	CHG: improved options by adding an srcpath (vs codepath) in the pfe ...


Tue, 16 Jun 2020 16:31:08 GMT Cheng Gong [25038]
	* issm/trunk-jpl/src/m/plot/plot_manager.m (modified)
	* issm/trunk-jpl/src/m/plot/plotmodel.m (modified)

	NEW: add 'subplot' option in plotmodel. The value has to be 1x3 ...


Tue, 16 Jun 2020 04:07:29 GMT Eric.Larour [25037]
	* issm/trunk-jpl/src/m/contrib/larour/ismip6.m (modified)

	CHG: ismip6 class.


Tue, 16 Jun 2020 02:24:00 GMT Eric.Larour [25036]
	* issm/trunk-jpl/src/m/contrib/larour/ismip6.m (added)
	* issm/trunk-jpl/src/m/contrib/larour/mme_time_correlation_matrix.m (added)

	CHG: new ismip6 class and correlation matrix routines.


Sat, 13 Jun 2020 03:03:09 GMT jdquinn [25035]
	* issm/trunk-jpl/src/m/classes/sealevelmodel.py (added)
	* issm/trunk-jpl/src/m/coordsystems/epsg2proj.m (modified)
	* issm/trunk-jpl/src/m/coordsystems/epsg2proj.py (added)
	* issm/trunk-jpl/src/m/coordsystems/gdaltransform.m (modified)
	* issm/trunk-jpl/src/m/coordsystems/gdaltransform.py (added)
	* issm/trunk-jpl/src/m/mesh/TwoDToThreeD.py (added)
	* issm/trunk-jpl/src/m/mesh/meshintersect3d.py (added)

	CHG: Saving changes for MATLAB -> Python API for solid earth


Fri, 12 Jun 2020 18:03:07 GMT jdquinn [25034]
	* issm/trunk-jpl/jenkins/ross-debian_linux-solid_earth (modified)
	* issm/trunk-jpl/packagers/linux/package-issm-linux-binaries-solid_earth.sh (modified)
	* issm/trunk-jpl/src/m/coordsystems/epsg2proj.m (modified)
	* issm/trunk-jpl/test/Archives/Archive2004.arch (modified)

	CHG: Fixes for test2002.m


Fri, 12 Jun 2020 17:24:30 GMT jdquinn [25033]
	* issm/trunk-jpl/src/m/classes/qmu/uniform_uncertain.m (modified)
	* issm/trunk-jpl/src/m/qmu/setupdesign/QmuSetupVariables.m (modified)

	BUG: length -> size


Fri, 12 Jun 2020 17:20:08 GMT jdquinn [25032]
	* issm/trunk-jpl/src/m/classes/qmu/uniform_uncertain.m (modified)

	BUG: length -> size


Fri, 12 Jun 2020 16:53:07 GMT jdquinn [25031]
	* issm/trunk-jpl/src/m/qmu/expandresponses.py (modified)
	* issm/trunk-jpl/src/m/qmu/expandvariables.py (modified)
	* issm/trunk-jpl/src/m/qmu/setupdesign/QmuSetupVariables.py (modified)

	CHG: Better variable naming so as not to confuse with indices;
	cleanup


Fri, 12 Jun 2020 16:31:27 GMT Mathieu Morlighem [25030]
	* issm/trunk-jpl/src/c/classes/Inputs2/TransientInput2.cpp (modified)

	CHG: minor


Fri, 12 Jun 2020 16:29:30 GMT Mathieu Morlighem [25029]
	* issm/trunk-jpl/test/NightlyRun/test355.py (modified)

	CHG: fixing floating point pb


Fri, 12 Jun 2020 16:29:22 GMT jdquinn [25028]
	* issm/trunk-jpl/src/m/classes/qmu/normal_uncertain.m (modified)
	* issm/trunk-jpl/src/m/classes/qmu/uniform_uncertain.m (modified)
	* issm/trunk-jpl/src/m/classes/qmu/uniform_uncertain.py (modified)
	* issm/trunk-jpl/src/m/qmu/setupdesign/QmuSetupVariables.m (modified)
	* issm/trunk-jpl/src/m/qmu/setupdesign/QmuSetupVariables.py (modified)

	CHG: More fixes for QMU


Fri, 12 Jun 2020 16:24:11 GMT Mathieu Morlighem [25027]
	* issm/trunk-jpl/src/c/classes/Inputs2/TransientInput2.cpp (modified)

	BUG: fixing AD


Fri, 12 Jun 2020 16:14:02 GMT bdef [25026]
	* issm/trunk-jpl/src/m/classes/initialization.py (modified)

	BUG: fixing logic test


Fri, 12 Jun 2020 16:11:02 GMT jdquinn [25025]
	* issm/trunk-jpl/src/m/classes/qmu/normal_uncertain.m (modified)
	* issm/trunk-jpl/src/m/classes/qmu/uniform_uncertain.m (modified)
	* issm/trunk-jpl/src/m/qmu/setupdesign/QmuSetupVariables.m (modified)

	CHG: Applied changes from normal_uncertain and handling to ...


Fri, 12 Jun 2020 15:22:16 GMT bdef [25024]
	* issm/trunk-jpl/src/c/analyses/HydrologyDCEfficientAnalysis.cpp (modified)
	* issm/trunk-jpl/src/c/analyses/HydrologyDCInefficientAnalysis.cpp (modified)
	* issm/trunk-jpl/src/c/classes/Elements/Penta.cpp (modified)
	* issm/trunk-jpl/src/c/classes/Elements/Tria.cpp (modified)
	* issm/trunk-jpl/src/c/classes/Inputs2/Inputs2.cpp (modified)
	* issm/trunk-jpl/src/c/classes/Inputs2/Inputs2.h (modified)
	* issm/trunk-jpl/src/c/classes/Inputs2/TransientInput2.cpp (modified)
	* issm/trunk-jpl/src/c/classes/Inputs2/TransientInput2.h (modified)
	* issm/trunk-jpl/src/c/cores/hydrology_core.cpp (modified)
	* issm/trunk-jpl/src/c/modules/InputUpdateFromSolutionx/InputUpdateFromSolutionx.cpp (modified)
	* issm/trunk-jpl/src/m/classes/hydrologydc.m (modified)
	* issm/trunk-jpl/test/Archives/Archive905.arch (modified)
	* issm/trunk-jpl/test/NightlyRun/test905.m (modified)
	* issm/trunk-jpl/test/NightlyRun/test905.py (modified)

	CHG:moving averaging on inputs and modification on 905 test


Fri, 12 Jun 2020 15:13:21 GMT bdef [25023]
	* issm/trunk-jpl/src/m/classes/frictionpism.py (added)
	* issm/trunk-jpl/src/m/classes/hydrologyglads.py (added)
	* issm/trunk-jpl/src/m/classes/hydrologypism.py (added)
	* issm/trunk-jpl/src/m/classes/initialization.py (modified)
	* issm/trunk-jpl/src/m/classes/model.py (modified)
	* issm/trunk-jpl/src/m/classes/stressbalance.py (modified)
	* issm/trunk-jpl/test/NightlyRun/test350.py (modified)
	* issm/trunk-jpl/test/NightlyRun/test355.py (added)
	* issm/trunk-jpl/test/NightlyRun/test610.py (added)
	* issm/trunk-jpl/test/NightlyRun/test612.py (added)

	NEW: adding hydro models in py and related tests, fix in ...


Fri, 12 Jun 2020 03:34:52 GMT jdquinn [25022]
	* issm/trunk-jpl/src/m/classes/qmu.py (modified)
	* issm/trunk-jpl/src/m/classes/qmu/normal_uncertain.m (modified)
	* issm/trunk-jpl/src/m/classes/qmu/normal_uncertain.py (modified)
	* issm/trunk-jpl/src/m/partition/AreaAverageOntoPartition.py (modified)
	* issm/trunk-jpl/src/m/qmu/preqmu.m (modified)
	* issm/trunk-jpl/src/m/qmu/preqmu.py (modified)
	* issm/trunk-jpl/src/m/qmu/setupdesign/QmuSetupVariables.m (modified)
	* issm/trunk-jpl/src/m/qmu/setupdesign/QmuSetupVariables.py (modified)
	* issm/trunk-jpl/test/NightlyRun/test412.py (modified)

	CHG: More MATLAB to Python API changes for Dakota interface


Fri, 12 Jun 2020 02:43:05 GMT Eric.Larour [25021]
	* issm/trunk-jpl/src/m/qmu/setupdesign/QmuSetupVariables.m (modified)

	CHG: better check on size of partitions and time UQ.


Fri, 12 Jun 2020 02:39:16 GMT Eric.Larour [25020]
	* issm/trunk-jpl/src/m/qmu/preqmu.m (modified)

	CHG: updated checks for transient UQ.


Fri, 12 Jun 2020 00:02:35 GMT Eric.Larour [25019]
	* issm/trunk-jpl/src/c/modules/InputUpdateFromDakotax/InputUpdateFromDakotax.cpp (modified)
	* issm/trunk-jpl/src/c/modules/ModelProcessorx/Dakota/CreateParametersDakota.cpp (modified)
	* issm/trunk-jpl/src/c/shared/Enum/Enum.vim (modified)
	* issm/trunk-jpl/src/c/shared/Enum/EnumDefinitions.h (modified)
	* issm/trunk-jpl/src/c/shared/Enum/EnumToStringx.cpp (modified)
	* issm/trunk-jpl/src/c/shared/Enum/StringToEnumx.cpp (modified)
	* issm/trunk-jpl/src/m/classes/qmu.m (modified)
	* issm/trunk-jpl/src/m/classes/qmu/normal_uncertain.m (modified)
	* issm/trunk-jpl/src/m/qmu/preqmu.m (modified)
	* issm/trunk-jpl/src/m/qmu/setupdesign/QmuSetupVariables.m (modified)

	CHG: implemented new way of updating transient inputs using normal ...


Thu, 11 Jun 2020 23:45:23 GMT schlegel [25018]
	* issm/trunk-jpl/src/m/classes/clusters/discover.m (modified)

	CHG: update calls for mpt in discover


Thu, 11 Jun 2020 23:44:27 GMT schlegel [25017]
	* issm/trunk-jpl/externalpackages/petsc/install-3.7-discover.sh (modified)

	CHG: need mpt mpi


Thu, 11 Jun 2020 22:21:33 GMT jdquinn [25016]
	* issm/trunk-jpl/test/NightlyRun/test218.js (modified)
	* issm/trunk-jpl/test/NightlyRun/test234.js (modified)
	* issm/trunk-jpl/test/NightlyRun/test235.js (modified)
	* issm/trunk-jpl/test/NightlyRun/test235.py (modified)
	* issm/trunk-jpl/test/NightlyRun/test250.py (modified)
	* issm/trunk-jpl/test/NightlyRun/test251.py (modified)
	* issm/trunk-jpl/test/NightlyRun/test413.py (modified)
	* issm/trunk-jpl/test/NightlyRun/test445.py (modified)

	CHG: Last of cleanup of md.qmu.numberofpartitions in NR


Thu, 11 Jun 2020 21:59:11 GMT jdquinn [25015]
	* issm/trunk-jpl/src/m/classes/qmu.py (modified)
	* issm/trunk-jpl/src/m/partition/partitioner.py (modified)
	* issm/trunk-jpl/src/m/qmu/importancefactors.py (modified)
	* issm/trunk-jpl/src/m/qmu/preqmu.m (modified)
	* issm/trunk-jpl/src/m/qmu/preqmu.py (modified)
	* issm/trunk-jpl/test/NightlyRun/test244.py (modified)

	CHG: Dakota interface changes from MATLAB to Python


Thu, 11 Jun 2020 20:29:27 GMT jdquinn [25014]
	* issm/trunk-jpl/src/m/classes/slr.py (modified)
	* issm/trunk-jpl/src/m/partition/partitioner.py (modified)
	* issm/trunk-jpl/src/m/qmu/setupdesign/QmuSetupResponses.py (modified)
	* issm/trunk-jpl/src/m/qmu/setupdesign/QmuSetupVariables.py (modified)

	CHG: Dakota interface changes from MATLAB to Python


Thu, 11 Jun 2020 20:13:43 GMT jdquinn [25013]
	* issm/trunk-jpl/src/m/qmu/preqmu.py (modified)

	BUG: Missing index


Thu, 11 Jun 2020 19:11:08 GMT jdquinn [25012]
	* issm/trunk-jpl/src/m/classes/pairoptions.py (modified)
	* issm/trunk-jpl/src/m/classes/plotoptions.py (modified)
	* issm/trunk-jpl/src/m/miscellaneous/PythonFuncs.py (modified)

	CHG: Cleanup


Thu, 11 Jun 2020 19:07:44 GMT jdquinn [25011]
	* issm/trunk-jpl/src/m/boundaryconditions/love_numbers.py (modified)
	* issm/trunk-jpl/src/m/classes/qmu.py (modified)
	* issm/trunk-jpl/src/m/classes/qmu/response_function.py (modified)
	* issm/trunk-jpl/src/m/classes/slr.py (modified)
	* issm/trunk-jpl/src/m/coordsystems/gmtmask.py (modified)
	* issm/trunk-jpl/src/m/modules/Scotch.py (modified)
	* issm/trunk-jpl/src/m/partition/partitioner.py (modified)
	* issm/trunk-jpl/src/m/plot/export_gl.py (modified)
	* issm/trunk-jpl/src/m/qmu/preqmu.py (modified)
	* issm/trunk-jpl/src/m/qmu/qmupart2npart.py (added)
	* issm/trunk-jpl/src/m/qmu/setupdesign/QmuSetupResponses.py (modified)
	* issm/trunk-jpl/src/m/qmu/setupdesign/QmuSetupVariables.py (modified)

	CHG: Partial commit of changes to Python Dakota interface; cleanup


Thu, 11 Jun 2020 17:32:01 GMT jdquinn [25010]
	* issm/trunk-jpl/src/m/classes/qmu.py (modified)
	* issm/trunk-jpl/test/NightlyRun/test218.py (modified)
	* issm/trunk-jpl/test/NightlyRun/test234.py (modified)
	* issm/trunk-jpl/test/NightlyRun/test250.py (modified)
	* issm/trunk-jpl/test/NightlyRun/test251.py (modified)
	* issm/trunk-jpl/test/NightlyRun/test412.py (modified)
	* issm/trunk-jpl/test/NightlyRun/test413.py (modified)
	* issm/trunk-jpl/test/NightlyRun/test414.py (modified)
	* issm/trunk-jpl/test/NightlyRun/test417.py (modified)
	* issm/trunk-jpl/test/NightlyRun/test418.py (modified)
	* issm/trunk-jpl/test/NightlyRun/test420.m (modified)
	* issm/trunk-jpl/test/NightlyRun/test420.py (modified)
	* issm/trunk-jpl/test/NightlyRun/test440.py (modified)
	* issm/trunk-jpl/test/NightlyRun/test444.py (modified)
	* issm/trunk-jpl/test/NightlyRun/test445.py (modified)

	CHG: Updated Python tests; now moving back through changes to Dakota ...


Thu, 11 Jun 2020 16:31:59 GMT Mathieu Morlighem [25009]
	* issm/trunk-jpl/test/NightlyRun/test250.m (modified)
	* issm/trunk-jpl/test/NightlyRun/test440.m (modified)

	BUG: trying to fix Dakota tests


Thu, 11 Jun 2020 04:47:55 GMT Mathieu Morlighem [25008]
	* issm/trunk-jpl/test/NightlyRun/test101.m (modified)

	CHG: reverting test101.m


Thu, 11 Jun 2020 04:45:24 GMT Eric.Larour [25007]
	* issm/trunk-jpl/test/NightlyRun/test218.m (modified)
	* issm/trunk-jpl/test/NightlyRun/test412.m (modified)
	* issm/trunk-jpl/test/NightlyRun/test413.m (modified)

	CHG: updating call to importance factors.


Thu, 11 Jun 2020 04:42:24 GMT Eric.Larour [25006]
	* issm/trunk-jpl/src/m/classes/qmu.m (modified)

	CHG: removed vpartition and epartition from qmu class.


Thu, 11 Jun 2020 04:41:58 GMT Eric.Larour [25005]
	* issm/trunk-jpl/test/NightlyRun/test101.m (modified)
	* issm/trunk-jpl/test/NightlyRun/test218.m (modified)
	* issm/trunk-jpl/test/NightlyRun/test234.m (modified)
	* issm/trunk-jpl/test/NightlyRun/test235.m (modified)
	* issm/trunk-jpl/test/NightlyRun/test244.m (modified)
	* issm/trunk-jpl/test/NightlyRun/test250.m (modified)
	* issm/trunk-jpl/test/NightlyRun/test251.m (modified)
	* issm/trunk-jpl/test/NightlyRun/test412.m (modified)
	* issm/trunk-jpl/test/NightlyRun/test413.m (modified)
	* issm/trunk-jpl/test/NightlyRun/test414.m (modified)
	* issm/trunk-jpl/test/NightlyRun/test417.m (modified)
	* issm/trunk-jpl/test/NightlyRun/test418.m (modified)
	* issm/trunk-jpl/test/NightlyRun/test420.m (modified)
	* issm/trunk-jpl/test/NightlyRun/test440.m (modified)
	* issm/trunk-jpl/test/NightlyRun/test444.m (modified)
	* issm/trunk-jpl/test/NightlyRun/test445.m (modified)

	CHG: updating tests to not rely on md.qmu.vpartition and ...


Thu, 11 Jun 2020 04:25:19 GMT Eric.Larour [25004]
	* issm/trunk-jpl/src/m/partition/AreaAverageOntoPartition.m (modified)
	* issm/trunk-jpl/src/m/qmu/importancefactors.m (modified)

	CHG: switching to partition vectors instead of qmu.vpartition and ...


Thu, 11 Jun 2020 04:19:25 GMT Eric.Larour [25003]
	* issm/trunk-jpl/src/m/coordsystems/epsg2proj.m (modified)

	CHG: fixed bug.


Thu, 11 Jun 2020 04:19:08 GMT Eric.Larour [25002]
	* issm/trunk-jpl/src/m/contrib/larour/prjwrite.m (added)

	CHG: projection write for .shp file.


Thu, 11 Jun 2020 04:18:51 GMT Eric.Larour [25001]
	* issm/trunk-jpl/src/m/contrib/larour/oceanmip.m (added)

	CHG: new ocean mip MME class.


Thu, 11 Jun 2020 04:17:54 GMT Eric.Larour [25000]
	* issm/trunk-jpl/src/m/mesh/modelmerge3d.m (modified)

	CHG: maskpsl not need anymore.


Thu, 11 Jun 2020 04:17:36 GMT Eric.Larour [24999]
	* issm/trunk-jpl/src/m/mesh/TwoDToThreeD.m (modified)

	CHG: maskpsl not needed anymore.


Thu, 11 Jun 2020 04:13:04 GMT Eric.Larour [24998]
	* issm/trunk-jpl/src/c/classes/FemModel.cpp (modified)
	* issm/trunk-jpl/src/c/modules/AverageOntoPartitionx/AverageOntoPartitionx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/AverageOntoPartitionx/AverageOntoPartitionx.h (modified)
	* issm/trunk-jpl/src/c/modules/ModelProcessorx/Dakota/CreateParametersDakota.cpp (modified)
	* issm/trunk-jpl/src/c/shared/Enum/Enum.vim (modified)
	* issm/trunk-jpl/src/c/shared/Enum/EnumDefinitions.h (modified)
	* issm/trunk-jpl/src/c/shared/Enum/EnumToStringx.cpp (modified)
	* issm/trunk-jpl/src/c/shared/Enum/StringToEnumx.cpp (modified)
	* issm/trunk-jpl/src/m/classes/qmu.m (modified)
	* issm/trunk-jpl/src/m/classes/qmu/response_function.m (modified)
	* issm/trunk-jpl/src/m/partition/partitioner.m (modified)
	* issm/trunk-jpl/src/m/qmu/preqmu.m (modified)
	* issm/trunk-jpl/src/m/qmu/setupdesign/QmuSetupResponses.m (modified)

	CHG: getting rid of qmu.vpartition and qmu.epartition completely. ...


Thu, 11 Jun 2020 02:37:32 GMT jdquinn [24997]
	* issm/trunk-jpl/test/Archives/Archive2002.arch (modified)
	* issm/trunk-jpl/test/Archives/Archive2003.arch (modified)
	* issm/trunk-jpl/test/Archives/Archive2010.arch (modified)

	CHG: Updated archives.


Thu, 11 Jun 2020 02:12:17 GMT Eric.Larour [24996]
	* issm/trunk-jpl/test/NightlyRun/test2004.m (modified)

	CHG: fixed some bugs.


Wed, 10 Jun 2020 17:04:28 GMT Eric.Larour [24995]
	* issm/trunk-jpl/scripts/ol.m (modified)

	CHG: if you include an 'End' step, it will stop listing further ...


Wed, 10 Jun 2020 09:16:15 GMT bdef [24994]
	* issm/trunk-jpl/src/c/classes/FemModel.cpp (modified)

	CHG:updating analysis list build for Hydro


Tue, 09 Jun 2020 22:03:02 GMT schlegel [24993]
	* issm/trunk-jpl/externalpackages/dakota/configs/6.2/CMakeLists.txt.discover20.patch (added)
	* issm/trunk-jpl/externalpackages/dakota/install-6.2-intel20-discover.sh (added)
	* issm/trunk-jpl/externalpackages/petsc/install-3.7-discover.sh (added)

	CHG: update discover to new system requirements


Tue, 09 Jun 2020 16:51:11 GMT jdquinn [24992]
	* issm/trunk-jpl/scripts/svn_repo_authors.sh (added)

	ADD: Script to output authors and number of commits from svn log


Tue, 09 Jun 2020 16:50:01 GMT Mathieu Morlighem [24991]
	* issm/trunk-jpl/src/c/classes/FemModel.cpp (modified)
	* issm/trunk-jpl/src/c/cores/levelsetfunctionslope_core.cpp (modified)

	CHG: better handling of list of analyses in transient by recursively ...


Tue, 09 Jun 2020 10:06:44 GMT bdef [24990]
	* issm/trunk-jpl/src/m/classes/transient.py (modified)
	* issm/trunk-jpl/test/NightlyRun/test3300.py (modified)
	* issm/trunk-jpl/test/Par/SquareNoDyn.py (modified)

	CHG:removing setallnull which is a clone of deactivateall


Tue, 09 Jun 2020 08:00:37 GMT Eric.Larour [24989]
	* issm/trunk-jpl/src/c/modules/InputUpdateFromDakotax/InputUpdateFromDakotax.cpp (modified)
	* issm/trunk-jpl/src/c/modules/ModelProcessorx/Dakota/CreateParametersDakota.cpp (modified)
	* issm/trunk-jpl/src/c/shared/Enum/Enum.vim (modified)
	* issm/trunk-jpl/src/c/shared/Enum/EnumDefinitions.h (modified)
	* issm/trunk-jpl/src/c/shared/Enum/EnumToStringx.cpp (modified)
	* issm/trunk-jpl/src/c/shared/Enum/StringToEnumx.cpp (modified)
	* issm/trunk-jpl/src/m/classes/qmu.m (modified)
	* issm/trunk-jpl/src/m/qmu/preqmu.m (modified)
	* issm/trunk-jpl/src/m/qmu/qmupart2npart.m (added)
	* issm/trunk-jpl/src/m/qmu/setupdesign/QmuSetupVariables.m (modified)

	CHG: had to redesign the InputUpdateFromDakotax module to work with ...


Tue, 09 Jun 2020 05:58:53 GMT Eric.Larour [24988]
	* issm/trunk-jpl/src/c/modules/InputUpdateFromDakotax/InputUpdateFromDakotax.cpp (modified)
	* issm/trunk-jpl/src/c/modules/ModelProcessorx/Dakota/CreateParametersDakota.cpp (modified)
	* issm/trunk-jpl/src/m/classes/qmu.m (modified)
	* issm/trunk-jpl/src/m/qmu/preqmu.m (modified)
	* issm/trunk-jpl/src/m/qmu/setupdesign/QmuSetupVariables.m (modified)

	CHG: more integration of partition vectors into variables. Slowly ...


Tue, 09 Jun 2020 05:24:44 GMT Eric.Larour [24987]
	* issm/trunk-jpl/src/c/shared/Enum/Enum.vim (modified)
	* issm/trunk-jpl/src/c/shared/Enum/EnumDefinitions.h (modified)
	* issm/trunk-jpl/src/c/shared/Enum/EnumToStringx.cpp (modified)
	* issm/trunk-jpl/src/c/shared/Enum/StringToEnumx.cpp (modified)

	CHG: new enum for qmu variable partitions.