# # ChangeLog for / # # Generated by Trac 1.4.3 # 05/03/25 04:18:16 Sun, 03 Feb 2019 03:54:52 GMT jdquinn [23688] * issm/trunk-jpl/test/NightlyRun/test541.m (modified) * issm/trunk-jpl/test/NightlyRun/test541.py (modified) CHG: Eased field tolerances Sun, 03 Feb 2019 01:08:23 GMT Mathieu Morlighem [23687] * issm/trunk-jpl/test/NightlyRun/test119.m (modified) * issm/trunk-jpl/test/NightlyRun/test119.py (modified) CHG: tightening tolerances Sun, 03 Feb 2019 00:01:05 GMT jdquinn [23686] * issm/trunk-jpl/test/NightlyRun/test541.m (modified) * issm/trunk-jpl/test/NightlyRun/test541.py (modified) CHG: Eased field tolerances Sat, 02 Feb 2019 08:48:47 GMT jdquinn [23685] * issm/trunk-jpl/scripts/DownloadExternalPackage.sh (modified) CHG: Minor uncommitted changes to external package download shell script Sat, 02 Feb 2019 08:45:24 GMT jdquinn [23684] * issm/trunk-jpl/test/NightlyRun/test211.js (modified) * issm/trunk-jpl/test/NightlyRun/test211.m (modified) * issm/trunk-jpl/test/NightlyRun/test211.py (modified) * issm/trunk-jpl/test/NightlyRun/test460.m (modified) * issm/trunk-jpl/test/NightlyRun/test460.py (modified) * issm/trunk-jpl/test/NightlyRun/test541.m (modified) * issm/trunk-jpl/test/NightlyRun/test541.py (modified) CHG: Eased field tolerances Sat, 02 Feb 2019 03:55:20 GMT jdquinn [23683] * issm/trunk-jpl/test/NightlyRun/test119.m (modified) * issm/trunk-jpl/test/NightlyRun/test119.py (modified) CHG: Eased elapsed time tolerance Sat, 02 Feb 2019 03:53:32 GMT jdquinn [23682] * issm/trunk-jpl/test/NightlyRun/test541.m (modified) * issm/trunk-jpl/test/NightlyRun/test541.py (modified) CHG: Eased field tolerances again Sat, 02 Feb 2019 00:18:15 GMT seroussi [23681] * issm/trunk-jpl/test/NightlyRun/test541.m (modified) * issm/trunk-jpl/test/NightlyRun/test541.py (modified) CHG: minor tolerances 541 Fri, 01 Feb 2019 23:04:28 GMT jdquinn [23680] * issm/trunk-jpl/test/NightlyRun/test541.m (modified) * issm/trunk-jpl/test/NightlyRun/test541.py (modified) CHG: Eased field tolerances Fri, 01 Feb 2019 17:32:06 GMT seroussi [23679] * issm/trunk-jpl/test/NightlyRun/test541.m (modified) * issm/trunk-jpl/test/NightlyRun/test541.py (modified) CHG: updated tolerances test 541 Fri, 01 Feb 2019 11:30:32 GMT bdef [23678] * issm/trunk-jpl/src/py3/contrib/bamg/YamsCall.py.bak (deleted) * issm/trunk-jpl/src/py3/contrib/netCDF/ClassTry.py.bak (deleted) * issm/trunk-jpl/src/py3/contrib/netCDF/export_netCDF.py.bak (deleted) * issm/trunk-jpl/src/py3/contrib/netCDF/read_netCDF.py.bak (deleted) * issm/trunk-jpl/src/py3/contrib/paraview/exportVTK.py.bak (deleted) CHG: cleaning unwanted files Fri, 01 Feb 2019 11:29:03 GMT bdef [23677] * issm/trunk-jpl/src/py3/archive (added) * issm/trunk-jpl/src/py3/archive/arch.py (added) * issm/trunk-jpl/src/py3/array (added) * issm/trunk-jpl/src/py3/array/MatlabArray.py (added) * issm/trunk-jpl/src/py3/boundaryconditions/love_numbers.py (added) * 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issm/trunk-jpl/src/py3/solve/parseresultsfromdisk.py (modified) * issm/trunk-jpl/src/py3/solve/solve.py (modified) CHG: adding missing directories and cleaning code Thu, 31 Jan 2019 23:26:15 GMT jdquinn [23676] * issm/trunk-jpl/externalpackages/gdal/install-macosx64-mojave.sh (added) ADD: GDAL installation script for MacOS Mojave Thu, 31 Jan 2019 22:28:15 GMT seroussi [23675] * issm/trunk-jpl/test/Archives/Archive541.arch (added) * issm/trunk-jpl/test/NightlyRun/test541.m (added) * issm/trunk-jpl/test/NightlyRun/test541.py (added) NEW: 3d test case for calving with von mises Thu, 31 Jan 2019 22:21:20 GMT seroussi [23674] * issm/trunk-jpl/src/c/classes/Elements/Penta.cpp (modified) * issm/trunk-jpl/src/c/classes/Elements/Penta.h (modified) NEW: extended distance computation to Penta elements Thu, 31 Jan 2019 21:26:49 GMT youngmc3 [23673] * issm/trunk-jpl/src/m/classes/frontalforcingsrignot.m (modified) CHG: timeseries for frontalforcingsrignot Thu, 31 Jan 2019 21:25:38 GMT youngmc3 [23672] * issm/trunk-jpl/src/c/classes/Elements/Tria.cpp (modified) * issm/trunk-jpl/src/c/classes/FemModel.cpp (modified) CHG: fixing memory leak Thu, 31 Jan 2019 19:32:45 GMT jdquinn [23671] * issm/trunk-jpl/test/NightlyRun/test119.m (modified) * issm/trunk-jpl/test/NightlyRun/test119.py (modified) CHG: Adjustment to elapsed time tolerance Thu, 31 Jan 2019 15:34:11 GMT bdef [23670] * issm/trunk-jpl/src/py3/boundaryconditions/PattynSMB.py (modified) * issm/trunk-jpl/src/py3/boundaryconditions/SetIceSheetBC.py (modified) * issm/trunk-jpl/src/py3/boundaryconditions/SetIceShelfBC.py (modified) * issm/trunk-jpl/src/py3/boundaryconditions/SetMarineIceSheetBC.py (modified) * issm/trunk-jpl/src/py3/classes/SMBcomponents.py (modified) * issm/trunk-jpl/src/py3/classes/SMBd18opdd.py (modified) * issm/trunk-jpl/src/py3/classes/SMBforcing.py (modified) * issm/trunk-jpl/src/py3/classes/SMBgradients.py (modified) * issm/trunk-jpl/src/py3/classes/SMBmeltcomponents.py (modified) * 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issm/trunk-jpl/src/py3/plot/plot_manager.py (modified) * issm/trunk-jpl/src/py3/plot/plot_mesh.py (modified) * issm/trunk-jpl/src/py3/plot/plot_overlay.py (modified) * issm/trunk-jpl/src/py3/plot/plot_streamlines.py (modified) * issm/trunk-jpl/src/py3/plot/plot_unit.py (modified) * issm/trunk-jpl/src/py3/plot/plotmodel.py (modified) * issm/trunk-jpl/src/py3/plot/processdata.py (modified) * issm/trunk-jpl/src/py3/plot/processmesh.py (modified) * issm/trunk-jpl/src/py3/plot/writejsfield.py (modified) * issm/trunk-jpl/src/py3/plot/writejsfile.py (modified) * issm/trunk-jpl/src/py3/shp/shp2exp.py (modified) * issm/trunk-jpl/src/py3/solve/WriteData.py (modified) * issm/trunk-jpl/src/py3/solve/loadresultsfromcluster.py (modified) * issm/trunk-jpl/src/py3/solve/loadresultsfromdisk.py (modified) * issm/trunk-jpl/src/py3/solve/marshall.py (modified) * issm/trunk-jpl/src/py3/solve/parseresultsfromdisk.py (modified) * issm/trunk-jpl/src/py3/solve/solve.py (modified) * issm/trunk-jpl/src/py3/solve/waitonlock.py (modified) * issm/trunk-jpl/src/py3/solvers/asmoptions.py (modified) * issm/trunk-jpl/src/py3/solvers/iluasmoptions.py (modified) * issm/trunk-jpl/src/py3/solvers/issmgslsolver.py (modified) * issm/trunk-jpl/src/py3/solvers/issmmumpssolver.py (modified) * issm/trunk-jpl/src/py3/solvers/jacobiasmoptions.py (modified) * issm/trunk-jpl/src/py3/solvers/jacobicgoptions.py (modified) * issm/trunk-jpl/src/py3/solvers/matlaboptions.py (modified) * issm/trunk-jpl/src/py3/solvers/mumpsoptions.py (modified) * issm/trunk-jpl/src/py3/solvers/soroptions.py (modified) * issm/trunk-jpl/src/py3/solvers/stokesoptions.py (modified) CHG: python scripts after 2to3 and indentation fix Tue, 29 Jan 2019 15:13:12 GMT bdef [23669] * issm/trunk-jpl/src/c/cores/hydrology_core.cpp (modified) CHG:minor clean-up Tue, 29 Jan 2019 08:51:06 GMT bdef [23668] * issm/trunk-jpl/src/c/analyses/HydrologyDCInefficientAnalysis.cpp (modified) BUG:fixing memory leak Mon, 28 Jan 2019 14:48:19 GMT bdef [23667] * issm/trunk-jpl/src/c/cores/hydrology_core.cpp (modified) BUG: missing bracket Mon, 28 Jan 2019 14:41:27 GMT bdef [23666] * issm/trunk-jpl/src/c/cores/hydrology_core.cpp (modified) BUG: fixing synthax icompatibility with C++98 Mon, 28 Jan 2019 10:29:02 GMT bdef [23665] * issm/trunk-jpl/src/c/cores/hydrology_core.cpp (modified) * issm/trunk-jpl/src/c/cores/transient_core.cpp (modified) * issm/trunk-jpl/src/c/modules/SurfaceMassBalancex/SurfaceMassBalancex.cpp (modified) CHG:incorporating SMB computation in the subloop for hydrologydc Mon, 28 Jan 2019 10:20:21 GMT bdef [23664] * issm/trunk-jpl/src/m/classes/hydrologydc.py (modified) * issm/trunk-jpl/src/m/classes/model.py (modified) BUG: fix to hydrology colapse and minor change in hydrologydc Fri, 25 Jan 2019 18:47:13 GMT Mathieu Morlighem [23663] * issm/trunk-jpl/externalpackages/dem/dem.m (modified) * issm/trunk-jpl/externalpackages/dem/license.txt (modified) CHG: updated dem externalpackage Fri, 25 Jan 2019 16:44:56 GMT Mathieu Morlighem [23662] * issm/trunk-jpl/externalpackages/topotoolbox (added) * issm/trunk-jpl/externalpackages/topotoolbox/install.sh (added) NEW: added topotoolbox, super useful Fri, 25 Jan 2019 11:22:12 GMT bdef [23661] * issm/trunk-jpl/src/c/analyses/HydrologyDCEfficientAnalysis.cpp (modified) * issm/trunk-jpl/src/c/analyses/HydrologyDCInefficientAnalysis.cpp (modified) * issm/trunk-jpl/src/c/cores/hydrology_core.cpp (modified) * issm/trunk-jpl/src/c/solutionsequences/solutionsequence_hydro_nonlinear.cpp (modified) BUG: bug in the treatment of initialization of inactive nodes Fri, 25 Jan 2019 02:44:12 GMT schlegel [23660] * issm/trunk-jpl/externalpackages/boost/install-1.55-lonestar.sh (modified) * issm/trunk-jpl/externalpackages/boost/install-1.55-stallo.sh (added) * issm/trunk-jpl/externalpackages/dakota/configs/6.2/CMakeLists.txt.stallo.patch (added) * issm/trunk-jpl/externalpackages/dakota/install-6.2-stallo.sh (added) NEW: install scripts for stallo dakota Fri, 25 Jan 2019 01:51:44 GMT youngmc3 [23659] * issm/trunk-jpl/test/NightlyRun/test807.py (modified) BUG: trying to fix py tests Fri, 25 Jan 2019 01:18:43 GMT youngmc3 [23658] * issm/trunk-jpl/src/m/classes/calving.py (modified) * issm/trunk-jpl/src/m/classes/calvinglevermann.py (modified) * issm/trunk-jpl/src/m/classes/calvingminthickness.py (modified) * issm/trunk-jpl/src/m/classes/calvingvonmises.py (modified) * issm/trunk-jpl/src/m/classes/frontalforcings.py (modified) * issm/trunk-jpl/src/m/classes/frontalforcingsrignot.py (added) BUG: trying to fix python tests Thu, 24 Jan 2019 22:56:14 GMT youngmc3 [23657] * issm/trunk-jpl/src/c/analyses/LevelsetAnalysis.cpp (modified) * issm/trunk-jpl/src/c/classes/IoModel.cpp (modified) * issm/trunk-jpl/src/c/modules/FrontalForcingsx/FrontalForcingsx.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/CreateParameters.cpp (modified) * issm/trunk-jpl/src/c/shared/Enum/EnumDefinitions.h (modified) * issm/trunk-jpl/src/c/shared/Enum/EnumToStringx.cpp (modified) * issm/trunk-jpl/src/c/shared/Enum/StringToEnumx.cpp (modified) * issm/trunk-jpl/src/c/shared/io/Marshalling/IoCodeConversions.cpp (modified) * issm/trunk-jpl/src/c/shared/io/Marshalling/IoCodeConversions.h (modified) * issm/trunk-jpl/src/m/classes/frontalforcings.m (modified) * issm/trunk-jpl/src/m/classes/frontalforcingsrignot.m (added) CHG: two different classes for frontalforcings Thu, 24 Jan 2019 16:12:37 GMT Mathieu Morlighem [23656] * issm/trunk-jpl/test/NightlyRun/test801.py (modified) * issm/trunk-jpl/test/Par/ValleyGlacierShelf.py (modified) BUG: trying to fix py tests Thu, 24 Jan 2019 00:40:38 GMT youngmc3 [23655] * issm/trunk-jpl/src/m/classes/frontalforcings.py (modified) CHG: fix python class for frontalforcings Thu, 24 Jan 2019 00:20:46 GMT youngmc3 [23654] * issm/trunk-jpl/src/m/classes/model.py (modified) CHG: python class for frontalforcings Wed, 23 Jan 2019 22:53:54 GMT youngmc3 [23653] * issm/trunk-jpl/src/m/classes/frontalforcings.py (added) * issm/trunk-jpl/src/m/classes/model.py (modified) * issm/trunk-jpl/test/NightlyRun/test540.py (modified) * issm/trunk-jpl/test/NightlyRun/test804.py (modified) * issm/trunk-jpl/test/NightlyRun/test805.py (modified) * issm/trunk-jpl/test/NightlyRun/test806.py (modified) * issm/trunk-jpl/test/NightlyRun/test807.py (modified) * issm/trunk-jpl/test/NightlyRun/test808.py (modified) CHG: python class for frontalforcings Wed, 23 Jan 2019 21:41:28 GMT youngmc3 [23652] * issm/trunk-jpl/src/c/Makefile.am (modified) * issm/trunk-jpl/src/c/analyses/LevelsetAnalysis.cpp (modified) * issm/trunk-jpl/src/c/classes/Elements/Element.h (modified) * issm/trunk-jpl/src/c/classes/Elements/Tria.cpp (modified) * issm/trunk-jpl/src/c/classes/Elements/Tria.h (modified) * issm/trunk-jpl/src/c/classes/FemModel.cpp (modified) * issm/trunk-jpl/src/c/classes/FemModel.h (modified) * issm/trunk-jpl/src/c/cores/movingfront_core.cpp (modified) * issm/trunk-jpl/src/c/modules/FrontalForcingsx (added) * issm/trunk-jpl/src/c/modules/FrontalForcingsx/FrontalForcingsx.cpp (added) * issm/trunk-jpl/src/c/modules/FrontalForcingsx/FrontalForcingsx.h (added) * issm/trunk-jpl/src/c/modules/modules.h (modified) * issm/trunk-jpl/src/c/shared/Enum/EnumDefinitions.h (modified) * issm/trunk-jpl/src/c/shared/Enum/EnumToStringx.cpp (modified) * issm/trunk-jpl/src/c/shared/Enum/StringToEnumx.cpp (modified) * issm/trunk-jpl/src/m/classes/calving.m (modified) * issm/trunk-jpl/src/m/classes/calvingcrevassedepth.m (modified) * issm/trunk-jpl/src/m/classes/calvinglevermann.m (modified) * issm/trunk-jpl/src/m/classes/calvingminthickness.m (modified) * issm/trunk-jpl/src/m/classes/calvingvonmises.m (modified) * issm/trunk-jpl/src/m/classes/frontalforcings.m (added) * issm/trunk-jpl/src/m/classes/model.m (modified) * issm/trunk-jpl/test/NightlyRun/test540.m (modified) * issm/trunk-jpl/test/NightlyRun/test804.m (modified) * issm/trunk-jpl/test/NightlyRun/test805.m (modified) * issm/trunk-jpl/test/NightlyRun/test806.m (modified) * issm/trunk-jpl/test/NightlyRun/test807.m (modified) * issm/trunk-jpl/test/NightlyRun/test808.m (modified) * issm/trunk-jpl/test/NightlyRun/test809.m (modified) * issm/trunk-jpl/test/Par/ValleyGlacierShelf.par (modified) NEW: add new class md.frontalforcings Wed, 23 Jan 2019 01:33:36 GMT Mathieu Morlighem [23651] * issm/trunk-jpl/src/wrappers/javascript/io/FetchJavascriptData.cpp (modified) CHG: fixing JS Wed, 23 Jan 2019 00:04:22 GMT Mathieu Morlighem [23650] * issm/trunk-jpl/src/m/print/printmodel.m (deleted) * issm/trunk-jpl/src/m/print/printmodel.py (deleted) DEL: useless, use export_fig instead Wed, 23 Jan 2019 00:03:51 GMT Mathieu Morlighem [23649] * issm/trunk-jpl/src/c/classes/IoModel.cpp (modified) * issm/trunk-jpl/src/c/classes/Options/GenericOption.h (modified) * issm/trunk-jpl/src/c/classes/Options/Option.h (modified) * issm/trunk-jpl/src/c/cores/transient_core.cpp (modified) * issm/trunk-jpl/src/wrappers/matlab/io/FetchMatlabData.cpp (modified) * issm/trunk-jpl/src/wrappers/matlab/io/matlabio.h (modified) CHG: now options only have size[2] for simplicity Mon, 21 Jan 2019 14:39:07 GMT Mathieu Morlighem [23648] * issm/trunk-jpl/src/c/modules/InputUpdateFromConstantx/InputUpdateFromConstantx.cpp (modified) CHG: better way of doing this Mon, 21 Jan 2019 14:36:46 GMT Mathieu Morlighem [23647] * issm/trunk-jpl/src/c/modules/ModelProcessorx/CreateParameters.cpp (modified) CHG: fixing materials now that matpar is gone Mon, 21 Jan 2019 04:01:53 GMT Mathieu Morlighem [23646] * issm/trunk-jpl/src/c/modules/InputUpdateFromConstantx/InputUpdateFromConstantx.cpp (modified) BUG: Fixed Dakota Sat, 19 Jan 2019 21:36:39 GMT Mathieu Morlighem [23645] * issm/trunk-jpl/src/c/analyses/EnthalpyAnalysis.cpp (modified) * issm/trunk-jpl/src/c/analyses/ThermalAnalysis.cpp (modified) BUG: Estar does not provide n since it is assume to be 3 Sat, 19 Jan 2019 20:48:01 GMT Mathieu Morlighem [23644] * issm/trunk-jpl/src/c/Makefile.am (modified) * issm/trunk-jpl/src/c/analyses/EnthalpyAnalysis.cpp (modified) * issm/trunk-jpl/src/c/analyses/HydrologyDCEfficientAnalysis.cpp (modified) * issm/trunk-jpl/src/c/analyses/HydrologyDCInefficientAnalysis.cpp (modified) * issm/trunk-jpl/src/c/analyses/HydrologyPismAnalysis.cpp (modified) * issm/trunk-jpl/src/c/analyses/HydrologyShaktiAnalysis.cpp (modified) * issm/trunk-jpl/src/c/analyses/HydrologyShreveAnalysis.cpp (modified) * issm/trunk-jpl/src/c/analyses/LevelsetAnalysis.cpp (modified) * issm/trunk-jpl/src/c/analyses/MasstransportAnalysis.cpp (modified) * issm/trunk-jpl/src/c/analyses/MeltingAnalysis.cpp (modified) * issm/trunk-jpl/src/c/analyses/SmoothAnalysis.cpp (modified) * issm/trunk-jpl/src/c/analyses/StressbalanceAnalysis.cpp (modified) * issm/trunk-jpl/src/c/analyses/StressbalanceSIAAnalysis.cpp (modified) * issm/trunk-jpl/src/c/analyses/StressbalanceVerticalAnalysis.cpp (modified) * issm/trunk-jpl/src/c/analyses/ThermalAnalysis.cpp (modified) * issm/trunk-jpl/src/c/classes/Elements/Element.cpp (modified) * issm/trunk-jpl/src/c/classes/Elements/Element.h (modified) * issm/trunk-jpl/src/c/classes/Elements/ElementHook.cpp (modified) * issm/trunk-jpl/src/c/classes/Elements/ElementHook.h (modified) * issm/trunk-jpl/src/c/classes/Elements/Penta.cpp (modified) * issm/trunk-jpl/src/c/classes/Elements/Penta.h (modified) * issm/trunk-jpl/src/c/classes/Elements/Seg.cpp (modified) * issm/trunk-jpl/src/c/classes/Elements/Seg.h (modified) * issm/trunk-jpl/src/c/classes/Elements/Tetra.cpp (modified) * issm/trunk-jpl/src/c/classes/Elements/Tetra.h (modified) * issm/trunk-jpl/src/c/classes/Elements/Tria.cpp (modified) * issm/trunk-jpl/src/c/classes/Elements/Tria.h (modified) * issm/trunk-jpl/src/c/classes/FemModel.cpp (modified) * issm/trunk-jpl/src/c/classes/Loads/Friction.cpp (modified) * issm/trunk-jpl/src/c/classes/Loads/Friction.h (modified) * issm/trunk-jpl/src/c/classes/Loads/Moulin.cpp (modified) * issm/trunk-jpl/src/c/classes/Loads/Moulin.h (modified) * issm/trunk-jpl/src/c/classes/Loads/Pengrid.cpp (modified) * issm/trunk-jpl/src/c/classes/Loads/Pengrid.h (modified) * issm/trunk-jpl/src/c/classes/Loads/Riftfront.cpp (modified) * issm/trunk-jpl/src/c/classes/Loads/Riftfront.h (modified) * issm/trunk-jpl/src/c/classes/Materials/Matice.cpp (modified) * issm/trunk-jpl/src/c/classes/Materials/Matlitho.h (modified) * issm/trunk-jpl/src/c/classes/Materials/Matpar.cpp (deleted) * issm/trunk-jpl/src/c/classes/Materials/Matpar.h (deleted) * issm/trunk-jpl/src/c/classes/Params/Parameters.cpp (modified) * issm/trunk-jpl/src/c/classes/Params/Parameters.h (modified) * issm/trunk-jpl/src/c/classes/classes.h (modified) * issm/trunk-jpl/src/c/datastructures/DataSet.cpp (modified) * issm/trunk-jpl/src/c/main/esmfbinders.cpp (modified) * issm/trunk-jpl/src/c/modules/InputUpdateFromConstantx/InputUpdateFromConstantx.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/CreateElementsVerticesAndMaterials.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/CreateParameters.cpp (modified) * issm/trunk-jpl/src/c/modules/SurfaceMassBalancex/SurfaceMassBalancex.cpp (modified) * issm/trunk-jpl/src/c/modules/SystemMatricesx/SystemMatricesx.cpp (modified) * issm/trunk-jpl/src/c/shared/Elements/elements.h (modified) * issm/trunk-jpl/src/c/shared/Enum/EnumDefinitions.h (modified) * issm/trunk-jpl/src/c/shared/Enum/EnumToStringx.cpp (modified) * issm/trunk-jpl/src/c/shared/Enum/StringToEnumx.cpp (modified) NEW: removing matpar from femmodel Thu, 17 Jan 2019 23:04:23 GMT Mathieu Morlighem [23643] * issm/trunk-jpl/src/c/classes/ExternalResults/GenericExternalResult.h (modified) * issm/trunk-jpl/src/c/toolkits/issm/IssmAbsVec.h (modified) * issm/trunk-jpl/src/c/toolkits/issm/IssmMpiVec.h (modified) * issm/trunk-jpl/src/c/toolkits/issm/IssmSeqVec.h (modified) * issm/trunk-jpl/src/c/toolkits/issm/IssmVec.h (modified) * issm/trunk-jpl/src/c/toolkits/objects/Vector.h (modified) * issm/trunk-jpl/src/c/toolkits/petsc/objects/PetscVec.cpp (modified) * issm/trunk-jpl/src/c/toolkits/petsc/objects/PetscVec.h (modified) * issm/trunk-jpl/src/c/toolkits/petsc/patches/VecToMPISerial.cpp (modified) * issm/trunk-jpl/src/c/toolkits/petsc/patches/petscpatches.h (modified) CHG: speed up output by not broadcasting to all cpus if only cpu 0 ... Thu, 17 Jan 2019 20:57:57 GMT Mathieu Morlighem [23642] * issm/trunk-jpl/src/c/classes/FemModel.cpp (modified) * issm/trunk-jpl/src/c/classes/FemModel.h (modified) * issm/trunk-jpl/src/c/classes/Node.h (modified) * issm/trunk-jpl/src/c/classes/Nodes.cpp (modified) * issm/trunk-jpl/src/c/classes/Nodes.h (modified) * issm/trunk-jpl/src/c/modules/AllocateSystemMatricesx/AllocateSystemMatricesx.cpp (modified) BUG: vector clone_connectivity is on nodes, not vertices Thu, 17 Jan 2019 20:00:34 GMT Mathieu Morlighem [23641] * issm/trunk-jpl/src/c/classes/Node.cpp (modified) * issm/trunk-jpl/src/c/classes/Node.h (modified) * issm/trunk-jpl/src/c/classes/Nodes.cpp (modified) * issm/trunk-jpl/src/c/classes/Nodes.h (modified) * issm/trunk-jpl/src/c/modules/AllocateSystemMatricesx/AllocateSystemMatricesx.cpp (modified) CHG: speeding up allocation without MPI_Allreduce Thu, 17 Jan 2019 17:23:41 GMT Mathieu Morlighem [23640] * issm/trunk-jpl/src/c/classes/Node.cpp (modified) * issm/trunk-jpl/src/c/classes/Node.h (modified) * issm/trunk-jpl/src/c/classes/Nodes.cpp (modified) * issm/trunk-jpl/src/c/classes/Nodes.h (modified) * issm/trunk-jpl/src/c/classes/Vertex.cpp (modified) * issm/trunk-jpl/src/c/classes/Vertex.h (modified) * issm/trunk-jpl/src/c/classes/Vertices.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/CreateElementsVerticesAndMaterials.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/CreateNodes.cpp (modified) CHG: use same scheme for nodes, with Finalize that distributes pids ... Thu, 17 Jan 2019 16:27:50 GMT Mathieu Morlighem [23639] * issm/trunk-jpl/src/c/classes/Vertices.cpp (modified) BUG: forgot to marshall and copy new fields Thu, 17 Jan 2019 00:54:18 GMT Mathieu Morlighem [23638] * issm/trunk-jpl/src/c/classes/Elements/Penta.cpp (modified) * issm/trunk-jpl/src/c/classes/FemModel.cpp (modified) * issm/trunk-jpl/src/c/classes/FemModel.h (modified) * issm/trunk-jpl/src/c/classes/Nodes.cpp (modified) * issm/trunk-jpl/src/c/classes/Vertex.cpp (modified) * issm/trunk-jpl/src/c/classes/Vertex.h (modified) * issm/trunk-jpl/src/c/classes/Vertices.cpp (modified) * issm/trunk-jpl/src/c/classes/Vertices.h (modified) * issm/trunk-jpl/src/c/modules/InputUpdateFromVectorx/InputUpdateFromVectorx.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/CreateElementsVerticesAndMaterials.cpp (modified) NEW: improved scalability of InputUpdateFromVector if on PIDs Wed, 16 Jan 2019 19:11:35 GMT Mathieu Morlighem [23637] * issm/trunk-jpl/src/c/modules/SystemMatricesx/SystemMatricesx.cpp (modified) CHG: splitted print statement in 2 for readibility Wed, 16 Jan 2019 18:36:55 GMT Mathieu Morlighem [23636] * issm/trunk-jpl/src/c/classes/FemModel.cpp (modified) * issm/trunk-jpl/src/c/classes/FemModel.h (modified) * issm/trunk-jpl/src/c/modules/InputUpdateFromSolutionx/InputUpdateFromSolutionx.cpp (modified) * issm/trunk-jpl/src/c/modules/SetActiveNodesLSMx/SetActiveNodesLSMx.cpp (modified) CHG: moving function to Femmodel so that it can be recycled Wed, 16 Jan 2019 16:49:18 GMT Mathieu Morlighem [23635] * issm/trunk-jpl/src/c/modules/ModelProcessorx/CreateElementsVerticesAndMaterials.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/CreateNodes.cpp (modified) CHG: added error message Wed, 16 Jan 2019 16:19:51 GMT bdef [23634] * issm/trunk-jpl/src/m/materials/cuffey.py (modified) BUG:removing print Wed, 16 Jan 2019 16:17:06 GMT bdef [23633] * issm/trunk-jpl/src/m/contrib/defleurian/netCDF/export_netCDF.py (modified) * issm/trunk-jpl/src/m/materials/cuffey.py (modified) BUG:fixing cuffey rheology Tue, 15 Jan 2019 18:17:45 GMT Mathieu Morlighem [23632] * issm/trunk-jpl/src/c/modules/InputUpdateFromSolutionx/InputUpdateFromSolutionx.cpp (modified) BUG: forgot to add #ifdef _HAVE_AD_ Tue, 15 Jan 2019 17:51:47 GMT Mathieu Morlighem [23631] * issm/trunk-jpl/src/c/modules/InputUpdateFromSolutionx/InputUpdateFromSolutionx.cpp (modified) CHG: fixing ADOLC nightly run Mon, 14 Jan 2019 17:18:35 GMT Mathieu Morlighem [23630] * issm/trunk-jpl/src/c/classes/Node.cpp (modified) * issm/trunk-jpl/src/c/classes/Node.h (modified) * issm/trunk-jpl/src/c/modules/Mergesolutionfromftogx/Mergesolutionfromftogx.cpp (modified) * issm/trunk-jpl/src/c/modules/Reducevectorgtofx/Reducevectorgtofx.cpp (modified) NEW: VecReduce is now free of MPISerial Mon, 14 Jan 2019 04:48:33 GMT Mathieu Morlighem [23629] * issm/trunk-jpl/src/c/analyses/AdjointHorizAnalysis.cpp (modified) * issm/trunk-jpl/src/c/analyses/DamageEvolutionAnalysis.cpp (modified) * issm/trunk-jpl/src/c/analyses/EnthalpyAnalysis.cpp (modified) * issm/trunk-jpl/src/c/analyses/HydrologyDCEfficientAnalysis.cpp (modified) * issm/trunk-jpl/src/c/analyses/HydrologyDCInefficientAnalysis.cpp (modified) * issm/trunk-jpl/src/c/analyses/HydrologyShaktiAnalysis.cpp (modified) * issm/trunk-jpl/src/c/analyses/HydrologyShreveAnalysis.cpp (modified) * issm/trunk-jpl/src/c/analyses/MasstransportAnalysis.cpp (modified) * issm/trunk-jpl/src/c/analyses/StressbalanceAnalysis.cpp (modified) * issm/trunk-jpl/src/c/analyses/StressbalanceSIAAnalysis.cpp (modified) * issm/trunk-jpl/src/c/analyses/StressbalanceVerticalAnalysis.cpp (modified) * issm/trunk-jpl/src/c/analyses/ThermalAnalysis.cpp (modified) * issm/trunk-jpl/src/c/analyses/UzawaPressureAnalysis.cpp (modified) * issm/trunk-jpl/src/c/classes/Elements/Element.cpp (modified) * issm/trunk-jpl/src/c/classes/Elements/Element.h (modified) * issm/trunk-jpl/src/c/classes/Elements/Penta.cpp (modified) * issm/trunk-jpl/src/c/classes/Elements/Tetra.cpp (modified) * issm/trunk-jpl/src/c/classes/Elements/Tria.cpp (modified) * issm/trunk-jpl/src/c/classes/Node.cpp (modified) * issm/trunk-jpl/src/c/classes/Node.h (modified) * issm/trunk-jpl/src/c/classes/Nodes.cpp (modified) * issm/trunk-jpl/src/c/classes/Nodes.h (modified) * issm/trunk-jpl/src/c/modules/InputUpdateFromSolutionx/InputUpdateFromSolutionx.cpp (modified) * issm/trunk-jpl/src/c/modules/InputUpdateFromSolutionx/InputUpdateFromSolutionx.h (modified) * issm/trunk-jpl/src/c/modules/Mergesolutionfromftogx/Mergesolutionfromftogx.cpp (modified) * issm/trunk-jpl/src/c/modules/SetActiveNodesLSMx/SetActiveNodesLSMx.cpp (modified) NEW: do not use MPISerial in InputUpdateFromSolution anymore Sat, 12 Jan 2019 05:22:50 GMT Mathieu Morlighem [23628] * issm/trunk-jpl/src/c/classes/Node.cpp (modified) * issm/trunk-jpl/src/c/classes/Node.h (modified) * issm/trunk-jpl/src/c/modules/Mergesolutionfromftogx/Mergesolutionfromftogx.cpp (modified) CHG: simplyfied VecMerge now that we have local indices Sat, 12 Jan 2019 05:10:55 GMT Mathieu Morlighem [23627] * issm/trunk-jpl/src/c/classes/Node.cpp (modified) * issm/trunk-jpl/src/c/classes/Node.h (modified) * issm/trunk-jpl/src/c/classes/Nodes.cpp (modified) CHG: revisited how dofs are allocated and distributed, now locally as ... Sat, 12 Jan 2019 02:47:00 GMT schlegel [23626] * issm/trunk-jpl/externalpackages/boost/configs/1.55/ordered_index.hpp.patch (added) * issm/trunk-jpl/externalpackages/boost/install-1.55-lonestar.sh (modified) * issm/trunk-jpl/externalpackages/dakota/configs/6.2/CMakeLists.txt.lonestar.patch (modified) * issm/trunk-jpl/externalpackages/dakota/configs/6.2/DakotaInterface.patch (added) * issm/trunk-jpl/externalpackages/dakota/configs/6.2/MainEffectsExcelOutput.patch (added) * issm/trunk-jpl/externalpackages/dakota/configs/6.2/NKM_KrigingModel.patch (added) * issm/trunk-jpl/externalpackages/dakota/install-6.2-lonestar.sh (modified) * issm/trunk-jpl/externalpackages/petsc/install-3.6-lonestar.sh (modified) CHG: update lonestar install Thu, 10 Jan 2019 18:22:40 GMT Mathieu Morlighem [23625] * issm/trunk-jpl/src/m/classes/clusters/localaurora.m (deleted) CHG: not needed Thu, 10 Jan 2019 18:18:18 GMT Mathieu Morlighem [23624] * issm/trunk-jpl/src/m/classes/clusters/aurora.m (modified) CHG: added aurora_settings call Thu, 10 Jan 2019 18:16:52 GMT Mathieu Morlighem [23623] * issm/trunk-jpl/externalpackages/polygonclipper/install.sh (modified) BUG: fixed polygonclipper with new version of MATLAB Thu, 10 Jan 2019 18:16:51 GMT Mathieu Morlighem [23622] * issm/trunk-jpl/externalpackages/petsc/install-3.9-aurora.sh (added) NEW: added install-3.9-aurora.sh Thu, 10 Jan 2019 15:13:42 GMT sjohnsen [23621] * issm/trunk-jpl/src/m/classes/friction.m (modified) CHG: enable FrictionCoupling flag 4 Thu, 10 Jan 2019 15:09:19 GMT sjohnsen [23620] * issm/trunk-jpl/src/c/analyses/EnthalpyAnalysis.cpp (modified) CHG: Update FrictionCoupling flags Wed, 09 Jan 2019 22:35:07 GMT seroussi [23619] * issm/trunk-jpl/test/NightlyRun/test209.m (modified) * issm/trunk-jpl/test/NightlyRun/test209.py (modified) CHG: tolerance test209 Wed, 09 Jan 2019 19:37:51 GMT schlegel [23618] * issm/trunk-jpl/src/m/classes/clusters/aurora.m (modified) * issm/trunk-jpl/src/m/classes/clusters/localaurora.m (modified) CHG: add dakota and ocean exec options Wed, 09 Jan 2019 19:19:22 GMT schlegel [23617] * issm/trunk-jpl/src/m/classes/clusters/localaurora.m (added) CHG: class to run jpl cluster locally Wed, 09 Jan 2019 18:56:50 GMT schlegel [23616] * issm/trunk-jpl/externalpackages/dakota/configs/6.2/BuildDakotaCustom.cmake.aurora.patch (added) * issm/trunk-jpl/externalpackages/dakota/configs/6.2/CMakeLists.txt.aurora.patch (added) * issm/trunk-jpl/externalpackages/dakota/install-6.2-aurora.sh (added) * issm/trunk-jpl/externalpackages/petsc/install-3.6-aurora.sh (modified) CHG: dakota install for jpl cluster Wed, 09 Jan 2019 18:52:27 GMT schlegel [23615] * issm/trunk-jpl/src/m/classes/clusters/aurora.m (added) NEW: add new JPL cluster class Wed, 09 Jan 2019 16:03:59 GMT Mathieu Morlighem [23614] * issm/trunk-jpl/src/c/classes/Node.cpp (modified) BUG: problem with marshall of node Wed, 09 Jan 2019 15:54:57 GMT Mathieu Morlighem [23613] * issm/trunk-jpl/src/c/toolkits/mpi/issmmpi.h (modified) CHG: new codipack path Wed, 09 Jan 2019 05:31:29 GMT Mathieu Morlighem [23612] * issm/trunk-jpl/src/c/Makefile.am (modified) * issm/trunk-jpl/src/c/classes/DofIndexing.cpp (deleted) * issm/trunk-jpl/src/c/classes/DofIndexing.h (deleted) * issm/trunk-jpl/src/c/classes/Elements/Element.cpp (modified) * issm/trunk-jpl/src/c/classes/Loads/Moulin.cpp (modified) * issm/trunk-jpl/src/c/classes/Loads/Neumannflux.cpp (modified) * issm/trunk-jpl/src/c/classes/Loads/Numericalflux.cpp (modified) * issm/trunk-jpl/src/c/classes/Loads/Pengrid.cpp (modified) * issm/trunk-jpl/src/c/classes/Loads/Penpair.cpp (modified) * issm/trunk-jpl/src/c/classes/Loads/Riftfront.cpp (modified) * issm/trunk-jpl/src/c/classes/Node.cpp (modified) * issm/trunk-jpl/src/c/classes/Node.h (modified) * issm/trunk-jpl/src/c/classes/classes.h (modified) * issm/trunk-jpl/src/c/modules/AllocateSystemMatricesx/AllocateSystemMatricesx.cpp (modified) * issm/trunk-jpl/src/c/modules/GetSolutionFromInputsx/GetSolutionFromInputsx.cpp (modified) CHG: merging Dofindexing and node Tue, 08 Jan 2019 23:37:21 GMT schlegel [23611] * issm/trunk-jpl/externalpackages/petsc/install-3.6-aurora.sh (added) * issm/trunk-jpl/m4/issm_options.m4 (modified) CHG: compilation for JPL cluster Tue, 08 Jan 2019 05:03:20 GMT Mathieu Morlighem [23610] * issm/trunk-jpl/src/c/toolkits/petsc/objects/PetscVec.cpp (modified) CHG: implemented Local vector size Tue, 08 Jan 2019 00:53:42 GMT youngmc3 [23609] * issm/trunk-jpl/src/m/classes/calvingcrevassedepth.m (modified) CHG: updated crevasse-depth calving law Tue, 08 Jan 2019 00:52:51 GMT youngmc3 [23608] * issm/trunk-jpl/test/NightlyRun/test809.m (modified) CHG: updated test for crevasse-depth calving Tue, 08 Jan 2019 00:51:42 GMT youngmc3 [23607] * issm/trunk-jpl/src/c/analyses/LevelsetAnalysis.cpp (modified) * issm/trunk-jpl/src/c/classes/Elements/Tria.cpp (modified) CHG: updated crevasse-depth calving law Sun, 06 Jan 2019 17:38:48 GMT Mathieu Morlighem [23606] * issm/trunk-jpl/src/c/toolkits/issm/IssmSeqVec.h (modified) CHG: added GetLocalVector to IssmSeqVec Sun, 06 Jan 2019 16:12:35 GMT Mathieu Morlighem [23605] * issm/trunk-jpl/src/c/toolkits/issm/IssmMpiVec.h (modified) BUG: fixed AD Sun, 06 Jan 2019 15:21:59 GMT Mathieu Morlighem [23604] * issm/trunk-jpl/src/c/toolkits/issm/IssmAbsVec.h (modified) * issm/trunk-jpl/src/c/toolkits/issm/IssmSeqVec.h (modified) * issm/trunk-jpl/src/c/toolkits/issm/IssmVec.h (modified) * issm/trunk-jpl/src/c/toolkits/objects/Vector.h (modified) * issm/trunk-jpl/src/c/toolkits/petsc/objects/PetscVec.cpp (modified) * issm/trunk-jpl/src/c/toolkits/petsc/objects/PetscVec.h (modified) BUG: fixed AD Sun, 06 Jan 2019 15:10:00 GMT Mathieu Morlighem [23603] * issm/trunk-jpl/src/c/toolkits/issm/IssmMpiVec.h (modified) BUG: fixed AD Sun, 06 Jan 2019 06:36:12 GMT Mathieu Morlighem [23602] * issm/trunk-jpl/src/c/Makefile.am (modified) * issm/trunk-jpl/src/c/classes/Node.cpp (modified) * issm/trunk-jpl/src/c/classes/Node.h (modified) * issm/trunk-jpl/src/c/modules/Mergesolutionfromftogx/Mergesolutionfromftogx.cpp (modified) * issm/trunk-jpl/src/c/modules/VecMergex (deleted) * issm/trunk-jpl/src/c/modules/modules.h (modified) * issm/trunk-jpl/src/c/toolkits/issm/IssmAbsVec.h (modified) * issm/trunk-jpl/src/c/toolkits/issm/IssmMpiVec.h (modified) * issm/trunk-jpl/src/c/toolkits/issm/IssmSeqVec.h (modified) * issm/trunk-jpl/src/c/toolkits/issm/IssmVec.h (modified) * issm/trunk-jpl/src/c/toolkits/objects/Vector.h (modified) * issm/trunk-jpl/src/c/toolkits/petsc/objects/PetscVec.cpp (modified) * issm/trunk-jpl/src/c/toolkits/petsc/objects/PetscVec.h (modified) * issm/trunk-jpl/src/c/toolkits/petsc/patches/VecMerge.cpp (deleted) * issm/trunk-jpl/src/c/toolkits/petsc/patches/petscpatches.h (modified) NEW: Mergesolution from f to g is now working without MPI calls, for ... Sun, 06 Jan 2019 04:18:05 GMT Mathieu Morlighem [23601] * issm/trunk-jpl/src/c/analyses/LoveAnalysis.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/CreateParameters.cpp (modified) CHG: moving some params to analysis Sat, 05 Jan 2019 05:15:03 GMT Mathieu Morlighem [23600] * issm/trunk-jpl/src/c/classes/Node.cpp (modified) * issm/trunk-jpl/src/c/classes/Node.h (modified) * issm/trunk-jpl/src/c/classes/Nodes.cpp (modified) * issm/trunk-jpl/src/c/modules/NodesDofx/NodesDofx.cpp (modified) NEW: new implementation of dof distribution, passing only clone ... Fri, 04 Jan 2019 04:42:49 GMT Mathieu Morlighem [23599] * issm/trunk-jpl/src/c/classes/Elements/Penta.cpp (modified) * issm/trunk-jpl/src/c/classes/Elements/Penta.h (modified) * issm/trunk-jpl/src/c/classes/Elements/Tria.cpp (modified) * issm/trunk-jpl/src/c/classes/Elements/Tria.h (modified) * issm/trunk-jpl/src/c/classes/Node.cpp (modified) * issm/trunk-jpl/src/c/classes/Node.h (modified) * issm/trunk-jpl/src/c/classes/Nodes.cpp (modified) * issm/trunk-jpl/src/c/classes/Vertex.cpp (modified) * issm/trunk-jpl/src/c/classes/Vertex.h (modified) * issm/trunk-jpl/src/c/classes/Vertices.cpp (modified) * issm/trunk-jpl/src/c/classes/Vertices.h (modified) CHG: more cleanup Fri, 04 Jan 2019 04:27:48 GMT Mathieu Morlighem [23598] * issm/trunk-jpl/src/c/classes/FemModel.cpp (modified) CHG: removed printf Fri, 04 Jan 2019 04:24:10 GMT Mathieu Morlighem [23597] * issm/trunk-jpl/src/c/classes/FemModel.cpp (modified) * issm/trunk-jpl/src/c/classes/Nodes.cpp (modified) CHG: added marshalling of comms Thu, 03 Jan 2019 21:00:09 GMT Mathieu Morlighem [23596] * issm/trunk-jpl/test/NightlyRun/test460.py (modified) BUG: bad indentation Thu, 03 Jan 2019 19:44:45 GMT Mathieu Morlighem [23595] * issm/trunk-jpl/test/NightlyRun/test460.m (modified) * issm/trunk-jpl/test/NightlyRun/test460.py (modified) CHG: relaxed tolerances Thu, 03 Jan 2019 18:18:13 GMT Mathieu Morlighem [23594] * issm/trunk-jpl/test/NightlyRun/test322.m (modified) * issm/trunk-jpl/test/NightlyRun/test322.py (modified) CHG: relaxed tolerances Thu, 03 Jan 2019 17:21:04 GMT Mathieu Morlighem [23593] * issm/trunk-jpl/src/c/modules/ModelProcessorx/CreateNodes.cpp (modified) CHG: special case for UzawaPressureAnalysis Thu, 03 Jan 2019 05:36:47 GMT Mathieu Morlighem [23592] * issm/trunk-jpl/src/c/modules/UpdateDynamicConstraintsx/UpdateDynamicConstraintsx.cpp (modified) BUG: forgot to add check on constraint type Thu, 03 Jan 2019 05:02:30 GMT Mathieu Morlighem [23591] * issm/trunk-jpl/src/c/modules/ModelProcessorx/CreateNodes.cpp (modified) CHG: minor Thu, 03 Jan 2019 05:02:03 GMT Mathieu Morlighem [23590] * issm/trunk-jpl/src/c/modules/ModelProcessorx/CreateNodes.cpp (modified) CHG: minor Thu, 03 Jan 2019 04:50:36 GMT Mathieu Morlighem [23589] * issm/trunk-jpl/src/c/cores/gia_core.cpp (modified) CHG: removing IsAnalysis now that each constraint, node and load is ...