# # ChangeLog for / # # Generated by Trac 1.4.3 # 04/29/25 13:14:29 Wed, 03 Feb 2016 01:28:28 GMT glperez [20050] * issm/trunk-jpl/jenkins/linux64_ross (modified) CHG: Upping Jenkins performance. Tue, 02 Feb 2016 23:29:45 GMT seroussi [20049] * issm/trunk-jpl/test/Archives/Archive342.nc (modified) * issm/trunk-jpl/test/NightlyRun/test342.m (modified) NEW: new archive for test 342 Tue, 02 Feb 2016 23:29:23 GMT seroussi [20048] * issm/trunk-jpl/src/m/classes/plumebasalforcings.m (modified) BUG: improved default value Tue, 02 Feb 2016 23:28:39 GMT seroussi [20047] * issm/trunk-jpl/src/c/classes/Elements/Element.cpp (modified) NEW: finished mantle class Mon, 01 Feb 2016 23:11:18 GMT glperez [20046] * issm/trunk-jpl/src/m/solvers/issmmumpssolver.py (modified) CHG: Added OrderdDict import from Python collections. Mon, 01 Feb 2016 22:09:03 GMT glperez [20045] * issm/trunk-jpl/src/m/classes/toolkits.py (modified) CHG: Added imports for mumpssolver. Mon, 01 Feb 2016 05:22:36 GMT Eric.Larour [20044] * issm/trunk-jpl/src/c/analyses/SealevelriseAnalysis.cpp (modified) CHG: not working because probably of the MPI_AllGatherv operation. Mon, 01 Feb 2016 05:12:46 GMT Eric.Larour [20043] * issm/trunk-jpl/src/c/classes/FemModel.cpp (modified) CHG: issue with missing Assemble step. Mon, 01 Feb 2016 04:57:08 GMT Eric.Larour [20042] * issm/trunk-jpl/src/m/classes/clusters/pfe.m (modified) CHG: update the types of cpus on pleaides. Mon, 01 Feb 2016 04:56:47 GMT Eric.Larour [20041] * issm/trunk-jpl/src/c/cores/sealevelrise_core_eustatic.cpp (modified) CHG: remove some of the Assemble calls. Mon, 01 Feb 2016 04:55:08 GMT Eric.Larour [20040] * issm/trunk-jpl/src/c/toolkits/issm/IssmMpiVec.h (modified) CHG: critical bug fix, erase buckets after assembly! Sun, 31 Jan 2016 21:32:46 GMT Eric.Larour [20039] * issm/trunk-jpl/src/c/modules/modules.h (modified) CHG: premature commit. Sun, 31 Jan 2016 07:40:20 GMT Eric.Larour [20038] * issm/trunk-jpl/src/c/classes/Nodalvalue.h (added) * issm/trunk-jpl/src/c/classes/classes.h (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/CreateOutputDefinitions.cpp (modified) * issm/trunk-jpl/src/c/modules/NodalValuex/NodalValuex.cpp (modified) * issm/trunk-jpl/src/c/modules/modules.h (modified) * issm/trunk-jpl/src/c/shared/Enum/EnumDefinitions.h (modified) * issm/trunk-jpl/src/c/shared/Enum/EnumToStringx.cpp (modified) * issm/trunk-jpl/src/c/shared/Enum/StringToEnumx.cpp (modified) * issm/trunk-jpl/src/m/classes/nodalvalue.m (added) * issm/trunk-jpl/src/m/enum/EnumDefinitions.js (modified) * issm/trunk-jpl/src/m/enum/EnumDefinitions.py (modified) * issm/trunk-jpl/src/m/enum/NodalvalueDefinitionenumEnum.m (added) * issm/trunk-jpl/src/m/enum/NodalvalueEnum.m (added) * issm/trunk-jpl/src/m/enum/NodalvalueModelEnumEnum.m (added) * issm/trunk-jpl/src/m/enum/NodalvalueNameEnum.m (added) * issm/trunk-jpl/src/m/enum/NodalvalueNodeEnum.m (added) * issm/trunk-jpl/src/m/plot/applyoptions.m (modified) CHG: added zoom option in plotmodel. Fixed Nodalvalue module. Added ... Sun, 31 Jan 2016 07:36:54 GMT Eric.Larour [20037] * issm/trunk-jpl/src/c/classes/Elements/Tria.cpp (modified) CHG: fixed NodalValue issue. Sun, 31 Jan 2016 05:55:21 GMT Eric.Larour [20036] * issm/trunk-jpl/src/c/analyses/SealevelriseAnalysis.cpp (modified) * issm/trunk-jpl/src/c/shared/Enum/EnumDefinitions.h (modified) * issm/trunk-jpl/src/c/shared/Enum/EnumToStringx.cpp (modified) * issm/trunk-jpl/src/c/shared/Enum/StringToEnumx.cpp (modified) * issm/trunk-jpl/src/m/classes/slr.m (modified) * issm/trunk-jpl/src/m/enum/EnumDefinitions.js (modified) * issm/trunk-jpl/src/m/enum/EnumDefinitions.py (modified) * issm/trunk-jpl/src/m/enum/SealevelriseNumRequestedOutputsEnum.m (added) * issm/trunk-jpl/src/m/enum/SealevelriseRequestedOutputsEnum.m (added) CHG: added requested outputs for slr solution. Sun, 31 Jan 2016 05:53:44 GMT Eric.Larour [20035] * issm/trunk-jpl/src/c/cores/sealevelrise_core.cpp (modified) CHG: better requested outputs. Sun, 31 Jan 2016 03:33:05 GMT Mathieu Morlighem [20034] * issm/trunk-jpl/src/c/analyses/SealevelriseAnalysis.cpp (modified) CHG: trying to fix reCast Sun, 31 Jan 2016 03:12:44 GMT Eric.Larour [20033] * issm/trunk-jpl/src/c/analyses/SealevelriseAnalysis.cpp (modified) * issm/trunk-jpl/src/c/shared/Enum/EnumDefinitions.h (modified) * issm/trunk-jpl/src/c/shared/Enum/EnumToStringx.cpp (modified) * issm/trunk-jpl/src/c/shared/Enum/StringToEnumx.cpp (modified) * issm/trunk-jpl/src/c/shared/Numerics/legendre.cpp (modified) * issm/trunk-jpl/src/m/classes/slr.m (modified) * issm/trunk-jpl/src/m/enum/EnumDefinitions.js (modified) * issm/trunk-jpl/src/m/enum/EnumDefinitions.py (modified) * issm/trunk-jpl/src/m/enum/SealevelriseDegaccEnum.m (added) CHG: parallelized computation of G_elastic in the Sealevelrise ... Sun, 31 Jan 2016 03:03:38 GMT seroussi [20032] * issm/trunk-jpl/src/c/shared/Numerics/legendre.cpp (modified) CHG: testing compile Sun, 31 Jan 2016 02:46:57 GMT seroussi [20031] * issm/trunk-jpl/src/c/shared/Numerics/legendre.cpp (modified) CHG: testing compile Sun, 31 Jan 2016 01:53:45 GMT seroussi [20030] * issm/trunk-jpl/src/c/analyses/SealevelriseAnalysis.cpp (modified) CHG: testing compile Sat, 30 Jan 2016 22:51:22 GMT Eric.Larour [20029] * issm/trunk-jpl/src/c/analyses/SealevelriseAnalysis.cpp (modified) CHG: do not compute G_elastic if we are not in elastic mode. Also, ... Sat, 30 Jan 2016 21:45:48 GMT Eric.Larour [20028] * issm/trunk-jpl/src/c/analyses/SealevelriseAnalysis.cpp (modified) * issm/trunk-jpl/src/c/classes/Elements/Tria.cpp (modified) * issm/trunk-jpl/src/c/classes/Params/DoubleVecParam.cpp (modified) * issm/trunk-jpl/src/c/classes/Params/DoubleVecParam.h (modified) * issm/trunk-jpl/src/c/shared/Enum/EnumDefinitions.h (modified) * issm/trunk-jpl/src/c/shared/Enum/EnumToStringx.cpp (modified) * issm/trunk-jpl/src/c/shared/Enum/StringToEnumx.cpp (modified) * issm/trunk-jpl/src/m/classes/slr.m (modified) * issm/trunk-jpl/src/m/enum/EnumDefinitions.js (modified) * issm/trunk-jpl/src/m/enum/EnumDefinitions.py (modified) * issm/trunk-jpl/src/m/enum/SealevelriseGRigidEnum.m (deleted) * issm/trunk-jpl/src/m/enum/SealevelriseLegendreCoefficientsEnum.m (deleted) * issm/trunk-jpl/src/m/enum/SealevelriseLegendrePrecomputeEnum.m (deleted) * issm/trunk-jpl/src/m/enum/SealevelriseStoreGreenFunctionsEnum.m (deleted) CHG: faster implementation of the precomputation of Green functions ... Sat, 30 Jan 2016 02:48:16 GMT Eric.Larour [20027] * issm/trunk-jpl/src/c/analyses/SealevelriseAnalysis.cpp (modified) * issm/trunk-jpl/src/c/classes/Elements/Tria.cpp (modified) * issm/trunk-jpl/src/c/shared/Numerics/legendre.cpp (modified) CHG: speed up of the precompute sea level rise core by transposing ... Sat, 30 Jan 2016 02:47:49 GMT Eric.Larour [20026] * issm/trunk-jpl/src/c/classes/Params/DoubleMatParam.cpp (modified) * issm/trunk-jpl/src/c/classes/Params/DoubleMatParam.h (modified) CHG: new pointer based get values routine. Sat, 30 Jan 2016 01:42:25 GMT dlcheng [20025] * issm/trunk-jpl/src/m/plot/applyoptions.js (modified) * issm/trunk-jpl/src/m/plot/webgl.js (modified) CHG (javascript): Implementing textlabels rendering. Sat, 30 Jan 2016 01:16:33 GMT Eric.Larour [20024] * issm/trunk-jpl/src/m/classes/slr.m (modified) CHG: default is now to precompute legendre polynomials. Sat, 30 Jan 2016 01:16:08 GMT Eric.Larour [20023] * issm/trunk-jpl/src/c/classes/Elements/Tria.cpp (modified) CHG: use precomputed legendre polynomial values if requested. Sat, 30 Jan 2016 01:15:42 GMT Eric.Larour [20022] * issm/trunk-jpl/src/c/analyses/SealevelriseAnalysis.cpp (modified) CHG: precompute legendre polynomial values. Sat, 30 Jan 2016 01:15:13 GMT Eric.Larour [20021] * issm/trunk-jpl/src/c/shared/Numerics/legendre.cpp (modified) * issm/trunk-jpl/src/c/shared/Numerics/numerics.h (modified) CHG: replace legendre.cpp by a better routine. Fri, 29 Jan 2016 23:07:12 GMT seroussi [20020] * issm/trunk-jpl/src/c/Makefile.am (modified) * issm/trunk-jpl/src/c/analyses/EnthalpyAnalysis.cpp (modified) * issm/trunk-jpl/src/c/analyses/ThermalAnalysis.cpp (modified) * issm/trunk-jpl/src/c/classes/Elements/Element.cpp (modified) * issm/trunk-jpl/src/c/classes/Elements/Element.h (modified) * issm/trunk-jpl/src/c/cores/thermal_core.cpp (modified) * issm/trunk-jpl/src/c/modules/FloatingiceMeltingRatex/FloatingiceMeltingRatex.cpp (modified) * issm/trunk-jpl/src/c/modules/GeothermalFluxx (added) * issm/trunk-jpl/src/c/modules/GeothermalFluxx/GeothermalFluxx.cpp (added) * issm/trunk-jpl/src/c/modules/GeothermalFluxx/GeothermalFluxx.h (added) * issm/trunk-jpl/src/c/modules/ModelProcessorx/CreateParameters.cpp (modified) * issm/trunk-jpl/src/c/modules/modules.h (modified) * issm/trunk-jpl/src/c/shared/Enum/EnumDefinitions.h (modified) * issm/trunk-jpl/src/c/shared/Enum/EnumToStringx.cpp (modified) * issm/trunk-jpl/src/c/shared/Enum/StringToEnumx.cpp (modified) * issm/trunk-jpl/src/m/classes/plumebasalforcings.m (added) * issm/trunk-jpl/src/m/enum/BasalforcingsBottomplumedepthEnum.m (added) * issm/trunk-jpl/src/m/enum/BasalforcingsCrustthicknessEnum.m (added) * issm/trunk-jpl/src/m/enum/BasalforcingsDtbgEnum.m (added) * issm/trunk-jpl/src/m/enum/BasalforcingsLowercrustheatEnum.m (added) * issm/trunk-jpl/src/m/enum/BasalforcingsMantleconductivityEnum.m (added) * issm/trunk-jpl/src/m/enum/BasalforcingsNusseltEnum.m (added) * issm/trunk-jpl/src/m/enum/BasalforcingsPlumeradiusEnum.m (added) * issm/trunk-jpl/src/m/enum/BasalforcingsPlumexEnum.m (added) * issm/trunk-jpl/src/m/enum/BasalforcingsPlumeyEnum.m (added) * issm/trunk-jpl/src/m/enum/BasalforcingsTopplumedepthEnum.m (added) * issm/trunk-jpl/src/m/enum/BasalforcingsUppercrustheatEnum.m (added) * issm/trunk-jpl/src/m/enum/BasalforcingsUppercrustthicknessEnum.m (added) * issm/trunk-jpl/src/m/enum/EnumDefinitions.js (modified) * issm/trunk-jpl/src/m/enum/EnumDefinitions.py (modified) * issm/trunk-jpl/src/m/enum/MantlePlumeGeothermalFluxEnum.m (added) * issm/trunk-jpl/test/Archives/Archive342.nc (added) * issm/trunk-jpl/test/NightlyRun/test342.m (added) NEW: starting to add Mantle Plume class to compute geothermal heat flux Fri, 29 Jan 2016 22:59:00 GMT glperez [20019] * issm/trunk-jpl/test/NightlyRun/test233.m (modified) * issm/trunk-jpl/test/NightlyRun/test233.py (modified) CHG: relaxed tests 233. Fri, 29 Jan 2016 22:47:47 GMT Eric.Larour [20018] * issm/trunk-jpl/src/c/classes/Elements/Tria.cpp (modified) CHG: new implementation of legendre function. Fri, 29 Jan 2016 22:18:16 GMT Mathieu Morlighem [20017] * issm/trunk-jpl/src/c/modules/ModelProcessorx/Control/UpdateElementsAndMaterialsControl.cpp (modified) CHG: no need to get Hobs everytime Fri, 29 Jan 2016 21:49:06 GMT girardc [20016] * issm/trunk-jpl/src/c/analyses/AdjointBalancethicknessAnalysis.cpp (modified) * issm/trunk-jpl/src/c/classes/FemModel.cpp (modified) * issm/trunk-jpl/src/c/classes/FemModel.h (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/Control/UpdateElementsAndMaterialsControl.cpp (modified) * issm/trunk-jpl/src/c/shared/Enum/EnumDefinitions.h (modified) * issm/trunk-jpl/src/c/shared/Enum/EnumToStringx.cpp (modified) * issm/trunk-jpl/src/c/shared/Enum/StringToEnumx.cpp (modified) * issm/trunk-jpl/src/m/enum/EnumDefinitions.js (modified) * issm/trunk-jpl/src/m/enum/EnumDefinitions.py (modified) * issm/trunk-jpl/src/m/enum/ThicknessPositiveEnum.m (added) * issm/trunk-jpl/src/m/inversions/marshallcostfunctions.m (modified) * issm/trunk-jpl/src/m/inversions/supportedcostfunctions.m (modified) NEW: added cost function that forces H to be positive for MC Fri, 29 Jan 2016 20:18:07 GMT Eric.Larour [20015] * issm/trunk-jpl/src/m/classes/slr.m (modified) CHG: adding store green functions flag Fri, 29 Jan 2016 20:17:47 GMT Eric.Larour [20014] * issm/trunk-jpl/src/c/analyses/SealevelriseAnalysis.cpp (modified) * issm/trunk-jpl/src/c/shared/Enum/EnumDefinitions.h (modified) * issm/trunk-jpl/src/c/shared/Enum/EnumToStringx.cpp (modified) * issm/trunk-jpl/src/c/shared/Enum/StringToEnumx.cpp (modified) * issm/trunk-jpl/src/m/enum/EnumDefinitions.js (modified) * issm/trunk-jpl/src/m/enum/EnumDefinitions.py (modified) * issm/trunk-jpl/src/m/enum/SealevelriseStoreGreenFunctionsEnum.m (added) CHG: adding option to not store green functions. Fri, 29 Jan 2016 20:16:20 GMT Eric.Larour [20013] * issm/trunk-jpl/src/m/coordsystems/gmtmask.m (modified) CHG: better verbose of gmtmask. Fri, 29 Jan 2016 20:03:48 GMT Eric.Larour [20012] * issm/trunk-jpl/src/c/classes/Elements/Tria.cpp (modified) CHG: 20% improvement in the SLR core speed from switching to ... Thu, 28 Jan 2016 07:00:42 GMT Eric.Larour [20011] * issm/trunk-jpl/src/c/classes/FemModel.cpp (modified) CHG: assemble every 100 steps. Thu, 28 Jan 2016 06:18:21 GMT Eric.Larour [20010] * issm/trunk-jpl/src/c/classes/FemModel.cpp (modified) CHG: call assemble routine for each step, because otherwise Petsc ... Thu, 28 Jan 2016 02:33:22 GMT schlegel [20009] * issm/trunk-jpl/src/m/classes/clusters/lonestar.m (modified) CHG: minor updtaes Thu, 28 Jan 2016 01:16:36 GMT schlegel [20008] * issm/trunk-jpl/externalpackages/dakota/configs/5.3.1/CMakeLists.txt.lonestar.patch (modified) * issm/trunk-jpl/externalpackages/dakota/install-6.2-lonestar.sh (modified) * issm/trunk-jpl/externalpackages/petsc/install-3.6-lonestar.sh (modified) CHG: use correct mpi Wed, 27 Jan 2016 23:25:57 GMT Eric.Larour [20007] * issm/trunk-jpl/src/c/Makefile.am (modified) * issm/trunk-jpl/src/c/classes/Elements/Element.h (modified) * issm/trunk-jpl/src/c/classes/Elements/Penta.h (modified) * issm/trunk-jpl/src/c/classes/Elements/Seg.h (modified) * issm/trunk-jpl/src/c/classes/Elements/Tetra.h (modified) * issm/trunk-jpl/src/c/classes/Elements/Tria.cpp (modified) * issm/trunk-jpl/src/c/classes/Elements/Tria.h (modified) * issm/trunk-jpl/src/c/classes/FemModel.cpp (modified) * issm/trunk-jpl/src/c/classes/FemModel.h (modified) * issm/trunk-jpl/src/c/cores/cores.h (modified) * issm/trunk-jpl/src/c/cores/sealevelrise_core.cpp (modified) * issm/trunk-jpl/src/c/cores/sealevelrise_core_eustatic.cpp (added) * issm/trunk-jpl/src/c/cores/sealevelrise_core_noneustatic.cpp (added) CHG: validation of the sealevelrise_core against Surendra's matlab ... Wed, 27 Jan 2016 23:23:38 GMT Eric.Larour [20006] * issm/trunk-jpl/src/c/shared/Enum/EnumDefinitions.h (modified) * issm/trunk-jpl/src/c/shared/Enum/EnumToStringx.cpp (modified) * issm/trunk-jpl/src/c/shared/Enum/StringToEnumx.cpp (modified) * issm/trunk-jpl/src/m/enum/EnumDefinitions.js (modified) * issm/trunk-jpl/src/m/enum/EnumDefinitions.py (modified) * issm/trunk-jpl/src/m/enum/SealevelriseGElasticEnum.m (added) * issm/trunk-jpl/src/m/enum/SealevelriseGRigidEnum.m (added) CHG: added SealevelriseGRigidEnum and SealevelriseGElasticEnum needed ... Wed, 27 Jan 2016 23:22:26 GMT Eric.Larour [20005] * issm/trunk-jpl/src/m/coordsystems/gmtmask.m (modified) CHG: some verbosing of gmtmask Wed, 27 Jan 2016 23:21:50 GMT Eric.Larour [20004] * issm/trunk-jpl/src/m/classes/matice.js (modified) CHG (javascript): minor issue with if statement. Wed, 27 Jan 2016 20:12:40 GMT glperez [20003] * issm/trunk-jpl/jenkins/linux64_ross_ampi (modified) CHG: removed commas from list of tests. Wed, 27 Jan 2016 19:36:27 GMT glperez [20002] * issm/trunk-jpl/src/m/classes/autodiff.py (modified) * issm/trunk-jpl/src/m/classes/dependent.py (modified) * issm/trunk-jpl/src/m/classes/independent.py (modified) * issm/trunk-jpl/test/NightlyRun/test3015.py (modified) CHG: changes to Python AD code to fix remaining failures. Wed, 27 Jan 2016 17:37:00 GMT glperez [20001] * issm/trunk-jpl/test/NightlyRun/test3101.py (modified) * issm/trunk-jpl/test/NightlyRun/test3102.py (modified) * issm/trunk-jpl/test/NightlyRun/test3103.py (modified) * issm/trunk-jpl/test/NightlyRun/test3104.py (modified) * issm/trunk-jpl/test/NightlyRun/test3105.py (modified) * issm/trunk-jpl/test/NightlyRun/test3106.py (modified) * issm/trunk-jpl/test/NightlyRun/test3107.py (modified) * issm/trunk-jpl/test/NightlyRun/test3108.py (modified) * issm/trunk-jpl/test/NightlyRun/test3109.py (modified) * issm/trunk-jpl/test/NightlyRun/test3110.py (modified) CHG: removing calls to issmmumpssolver() and issmgslsolver from ... Wed, 27 Jan 2016 17:07:08 GMT glperez [20000] * issm/trunk-jpl/jenkins/linux64_ross_ampi (modified) CHG: Adding new options for Jenkins config file. Wed, 27 Jan 2016 17:04:26 GMT glperez [19999] * issm/trunk-jpl/test/NightlyRun/test124.m (modified) CHG: relaxing fields of test124.m Wed, 27 Jan 2016 03:04:13 GMT glperez [19998] * issm/trunk-jpl/src/m/classes/toolkits.py (modified) * issm/trunk-jpl/src/m/solvers/issmgslsolver.py (modified) * issm/trunk-jpl/src/m/solvers/issmmumpssolver.py (modified) CHG: Fixing python AD bug by upgrading issmgslsolver.py and ... Tue, 26 Jan 2016 23:28:58 GMT schlegel [19997] * issm/trunk-jpl/src/m/classes/clusters/lonestar.m (modified) CHG: add mailing option to lonestar Tue, 26 Jan 2016 21:18:56 GMT schlegel [19996] * issm/trunk-jpl/src/m/classes/clusters/lonestar.m (modified) CHG: minor updates for SLURM Tue, 26 Jan 2016 21:04:15 GMT schlegel [19995] * issm/trunk-jpl/externalpackages/petsc/install-3.6-lonestar.sh (modified) CHG: need to run sbatch Tue, 26 Jan 2016 05:23:03 GMT glperez [19994] * issm/trunk-jpl/test/NightlyRun/test513.m (modified) CHG: Relaxing MATLAB test513. No need to relax Python test since it ... Tue, 26 Jan 2016 03:42:49 GMT seroussi [19993] * issm/trunk-jpl/externalpackages/export_fig/LICENSE (modified) * issm/trunk-jpl/externalpackages/export_fig/README.md (modified) * issm/trunk-jpl/externalpackages/export_fig/append_pdfs.m (modified) * issm/trunk-jpl/externalpackages/export_fig/copyfig.m (modified) * issm/trunk-jpl/externalpackages/export_fig/crop_borders.m (modified) * issm/trunk-jpl/externalpackages/export_fig/eps2pdf.m (modified) * issm/trunk-jpl/externalpackages/export_fig/export_fig.m (modified) * issm/trunk-jpl/externalpackages/export_fig/fix_lines.m (modified) * issm/trunk-jpl/externalpackages/export_fig/ghostscript.m (modified) * issm/trunk-jpl/externalpackages/export_fig/isolate_axes.m (modified) * issm/trunk-jpl/externalpackages/export_fig/pdftops.m (modified) * issm/trunk-jpl/externalpackages/export_fig/print2array.m (modified) * issm/trunk-jpl/externalpackages/export_fig/print2eps.m (modified) * issm/trunk-jpl/externalpackages/export_fig/user_string.m (modified) * issm/trunk-jpl/externalpackages/export_fig/using_hg2.m (modified) BUG: reverting back to old export_fig (too many problems) Sun, 24 Jan 2016 06:57:50 GMT dlcheng [19992] * issm/trunk-jpl/src/m/plot/applyoptions.js (modified) * issm/trunk-jpl/src/m/plot/webgl.js (modified) CHG (javascript): Implementing point cloud rendering. Sat, 23 Jan 2016 03:26:01 GMT glperez [19991] * issm/trunk-jpl/src/c/classes/Elements/Tria.cpp (modified) CHG: another cast needed for AD. Sat, 23 Jan 2016 02:54:00 GMT glperez [19990] * issm/trunk-jpl/src/c/classes/Elements/Tria.cpp (modified) CHG: a fix for AD. Need to cast IssmDouble to int. Sat, 23 Jan 2016 02:21:03 GMT Eric.Larour [19989] * issm/trunk-jpl/src/c/classes/Elements/Tria.cpp (modified) CHG: issue with the legendre call. Sat, 23 Jan 2016 00:52:38 GMT Eric.Larour [19988] * issm/trunk-jpl/src/m/classes/matdamageice.m (modified) * issm/trunk-jpl/src/m/classes/matdamageice.py (modified) * issm/trunk-jpl/src/m/classes/matice.js (modified) * issm/trunk-jpl/src/m/classes/matice.py (modified) CHG: missing earth density Fri, 22 Jan 2016 19:01:02 GMT Eric.Larour [19987] * issm/trunk-jpl/src/c/analyses/SealevelriseAnalysis.cpp (modified) * issm/trunk-jpl/src/c/classes/Elements/Element.cpp (modified) * issm/trunk-jpl/src/c/classes/Elements/Element.h (modified) * issm/trunk-jpl/src/c/classes/Elements/Tria.cpp (modified) * issm/trunk-jpl/src/c/shared/Enum/EnumDefinitions.h (modified) * issm/trunk-jpl/src/c/shared/Enum/EnumToStringx.cpp (modified) * issm/trunk-jpl/src/c/shared/Enum/StringToEnumx.cpp (modified) * issm/trunk-jpl/src/m/classes/maskpsl.m (modified) * issm/trunk-jpl/src/m/enum/EnumDefinitions.js (modified) * issm/trunk-jpl/src/m/enum/EnumDefinitions.py (modified) * issm/trunk-jpl/src/m/enum/MaskLandLevelsetEnum.m (added) * issm/trunk-jpl/src/m/enum/SealevelriseLegendreCoefficientsEnum.m (added) * issm/trunk-jpl/src/m/enum/SealevelriseLegendrePrecomputeEnum.m (added) CHG: - upload legendre coefficients if they are precomputed. - new ... Fri, 22 Jan 2016 18:47:46 GMT Eric.Larour [19986] * issm/trunk-jpl/src/c/analyses/SealevelriseAnalysis.cpp (modified) * issm/trunk-jpl/src/c/classes/Elements/Tria.cpp (modified) * issm/trunk-jpl/src/c/shared/Enum/EnumDefinitions.h (modified) * issm/trunk-jpl/src/c/shared/Enum/EnumToStringx.cpp (modified) * issm/trunk-jpl/src/c/shared/Enum/StringToEnumx.cpp (modified) * issm/trunk-jpl/src/m/classes/slr.m (modified) * issm/trunk-jpl/src/m/enum/EnumDefinitions.js (modified) * issm/trunk-jpl/src/m/enum/EnumDefinitions.py (modified) CHG: added precomputation of legendre polynomials. Fri, 22 Jan 2016 17:57:26 GMT Eric.Larour [19985] * issm/trunk-jpl/m4/analyses.m4 (modified) CHG: new sea level rise hook up for the configure script. Fri, 22 Jan 2016 17:56:50 GMT Eric.Larour [19984] * issm/trunk-jpl/src/c/Makefile.am (modified) * issm/trunk-jpl/src/c/analyses/EnumToAnalysis.cpp (modified) * issm/trunk-jpl/src/c/analyses/SealevelriseAnalysis.cpp (added) * issm/trunk-jpl/src/c/analyses/SealevelriseAnalysis.h (added) * issm/trunk-jpl/src/c/analyses/analyses.h (modified) * issm/trunk-jpl/src/c/classes/Elements/Element.cpp (modified) * issm/trunk-jpl/src/c/classes/Elements/Element.h (modified) * issm/trunk-jpl/src/c/classes/Elements/Penta.h (modified) * issm/trunk-jpl/src/c/classes/Elements/Seg.h (modified) * issm/trunk-jpl/src/c/classes/Elements/Tetra.h (modified) * issm/trunk-jpl/src/c/classes/Elements/Tria.cpp (modified) * issm/trunk-jpl/src/c/classes/Elements/Tria.h (modified) * issm/trunk-jpl/src/c/classes/FemModel.cpp (modified) * issm/trunk-jpl/src/c/classes/FemModel.h (modified) * issm/trunk-jpl/src/c/classes/Materials/Matpar.cpp (modified) * issm/trunk-jpl/src/c/classes/Materials/Matpar.h (modified) * issm/trunk-jpl/src/c/classes/Vertex.cpp (modified) * issm/trunk-jpl/src/c/classes/Vertex.h (modified) * issm/trunk-jpl/src/c/cores/CorePointerFromSolutionEnum.cpp (modified) * issm/trunk-jpl/src/c/cores/cores.h (modified) * issm/trunk-jpl/src/c/cores/sealevelrise_core.cpp (added) * issm/trunk-jpl/src/c/modules/ModelProcessorx/CreateElementsVerticesAndMaterials.cpp (modified) * issm/trunk-jpl/src/c/modules/VertexCoordinatesx/VertexCoordinatesx.cpp (modified) * issm/trunk-jpl/src/c/modules/VertexCoordinatesx/VertexCoordinatesx.h (modified) * issm/trunk-jpl/src/m/classes/maskpsl.m (modified) * issm/trunk-jpl/src/m/classes/matice.m (modified) * issm/trunk-jpl/src/m/classes/model.m (modified) * issm/trunk-jpl/src/m/classes/slr.m (added) * issm/trunk-jpl/src/m/consistency/ismodelselfconsistent.m (modified) CHG: new sea level rise solution. Not valdated yet! This solution ... Fri, 22 Jan 2016 17:52:25 GMT Eric.Larour [19983] * issm/trunk-jpl/src/c/cores/gia_core.cpp (modified) CHG: fixed leak. Fri, 22 Jan 2016 17:48:17 GMT Eric.Larour [19982] * issm/trunk-jpl/src/m/classes/mesh3dsurface.m (modified) CHG: no need to preprocess lat and long. Just upload them as is. Fri, 22 Jan 2016 17:47:38 GMT Eric.Larour [19981] * issm/trunk-jpl/src/m/coordsystems/gmtmask.m (modified) CHG: address issue of gmtmask not accepting large input files (i.e. ... Fri, 22 Jan 2016 17:46:47 GMT Eric.Larour [19980] * issm/trunk-jpl/src/m/Makefile.am (modified) CHG: added gauge.js to install target of scripts. Fri, 22 Jan 2016 17:41:50 GMT Eric.Larour [19979] * issm/trunk-jpl/src/c/shared/Numerics/legendre.cpp (added) * issm/trunk-jpl/src/c/shared/Numerics/numerics.h (modified) NEW: legendre polynomial evaluation function. Fri, 22 Jan 2016 17:36:26 GMT Eric.Larour [19978] * issm/trunk-jpl/src/c/shared/Enum/EnumDefinitions.h (modified) * issm/trunk-jpl/src/c/shared/Enum/EnumToStringx.cpp (modified) * issm/trunk-jpl/src/c/shared/Enum/StringToEnumx.cpp (modified) * issm/trunk-jpl/src/m/enum/Domain3DsurfaceEnum.m (added) * issm/trunk-jpl/src/m/enum/EnumDefinitions.js (modified) * issm/trunk-jpl/src/m/enum/EnumDefinitions.py (modified) * issm/trunk-jpl/src/m/enum/MaskOceanLevelsetEnum.m (added) * issm/trunk-jpl/src/m/enum/MaterialsEarthDensityEnum.m (added) * issm/trunk-jpl/src/m/enum/MeshLatEnum.m (added) * issm/trunk-jpl/src/m/enum/MeshLongEnum.m (added) * issm/trunk-jpl/src/m/enum/MeshREnum.m (added) * issm/trunk-jpl/src/m/enum/SealevelriseAbstolEnum.m (added) * issm/trunk-jpl/src/m/enum/SealevelriseAnalysisEnum.m (added) * issm/trunk-jpl/src/m/enum/SealevelriseDeltathicknessEnum.m (added) * issm/trunk-jpl/src/m/enum/SealevelriseElasticEnum.m (added) * issm/trunk-jpl/src/m/enum/SealevelriseEustaticEnum.m (added) * issm/trunk-jpl/src/m/enum/SealevelriseLoveHEnum.m (added) * issm/trunk-jpl/src/m/enum/SealevelriseLoveKEnum.m (added) * issm/trunk-jpl/src/m/enum/SealevelriseMaxiterEnum.m (added) * issm/trunk-jpl/src/m/enum/SealevelriseReltolEnum.m (added) * issm/trunk-jpl/src/m/enum/SealevelriseRigidEnum.m (added) * issm/trunk-jpl/src/m/enum/SealevelriseSEnum.m (added) * issm/trunk-jpl/src/m/enum/SealevelriseSolutionEnum.m (added) CHG: new enums for the sea level rise solution. Fri, 22 Jan 2016 17:34:31 GMT Eric.Larour [19977] * issm/trunk-jpl/src/c/toolkits/issm/IssmAbsVec.h (modified) * issm/trunk-jpl/src/c/toolkits/issm/IssmMpiVec.h (modified) * issm/trunk-jpl/src/c/toolkits/issm/IssmSeqVec.h (modified) * issm/trunk-jpl/src/c/toolkits/issm/IssmVec.h (modified) * issm/trunk-jpl/src/c/toolkits/objects/Vector.h (modified) * issm/trunk-jpl/src/c/toolkits/petsc/objects/PetscVec.cpp (modified) * issm/trunk-jpl/src/c/toolkits/petsc/objects/PetscVec.h (modified) CHG: new capability to shift a toolkit vector by a certain offset. ... Fri, 22 Jan 2016 07:31:57 GMT glperez [19976] * issm/trunk-jpl/jenkins/linux64_ross_ad (modified) CHG: Jenkins AD should only be running AD tests when provided with ... Fri, 22 Jan 2016 07:04:16 GMT dlcheng [19975] * issm/trunk-jpl/src/m/plot/gauge.js (modified) CHG (javascript): Adding text label option for gauges. Fri, 22 Jan 2016 06:54:05 GMT glperez [19974] * issm/trunk-jpl/jenkins/linux64_ross_ad (modified) CHG: Added python stuff to AD configure for Jenkins. Fri, 22 Jan 2016 05:25:47 GMT dlcheng [19973] * issm/trunk-jpl/externalpackages/javascript/src/gauge.min.js (added) ADD (javascript): gauge source file. Fri, 22 Jan 2016 05:25:44 GMT Eric.Larour [19972] * issm/trunk-jpl/externalpackages/javascript/src/hammer.min.js (modified) * issm/trunk-jpl/externalpackages/javascript/src/jsonfn.js (added) CHG: some new packages. Fri, 22 Jan 2016 01:58:22 GMT glperez [19971] * issm/trunk-jpl/src/m/classes/autodiff.py (modified) CHG: Restoring changes to autodiff.py Fri, 22 Jan 2016 01:55:59 GMT glperez [19970] * issm/trunk-jpl/src/m/classes/autodiff.py (modified) REV: reverting changes to autodiff.py Fri, 22 Jan 2016 01:38:07 GMT glperez [19969] * issm/trunk-jpl/src/m/classes/toolkits.py (modified) REV: reverting changes to toolkit.py Fri, 22 Jan 2016 00:55:00 GMT glperez [19968] * issm/trunk-jpl/jenkins/linux64_ross_ad (modified) * issm/trunk-jpl/jenkins/linux64_ross_ampi (modified) CHG: Adding AD Python tests. Fri, 22 Jan 2016 00:33:13 GMT glperez [19967] * issm/trunk-jpl/src/m/classes/autodiff.py (modified) * issm/trunk-jpl/src/m/classes/toolkits.py (modified) CHG: Added some modules required for non Petsc solvers as well as ... Fri, 22 Jan 2016 00:11:58 GMT glperez [19966] * issm/trunk-jpl/test/NightlyRun/test3001.py (modified) * issm/trunk-jpl/test/NightlyRun/test3002.py (modified) * issm/trunk-jpl/test/NightlyRun/test3003.py (modified) * issm/trunk-jpl/test/NightlyRun/test3004.py (modified) * issm/trunk-jpl/test/NightlyRun/test3005.py (modified) * issm/trunk-jpl/test/NightlyRun/test3006.py (modified) * issm/trunk-jpl/test/NightlyRun/test3007.py (modified) * issm/trunk-jpl/test/NightlyRun/test3008.py (modified) * issm/trunk-jpl/test/NightlyRun/test3009.py (modified) * issm/trunk-jpl/test/NightlyRun/test3010.py (modified) * issm/trunk-jpl/test/NightlyRun/test3015.py (modified) * issm/trunk-jpl/test/NightlyRun/test3019.py (modified) * issm/trunk-jpl/test/NightlyRun/test3020.py (modified) * issm/trunk-jpl/test/NightlyRun/test3119.py (modified) CHG: Removed call to issmgslsolver() from AD tests. Call is done ... Wed, 20 Jan 2016 02:15:11 GMT dlcheng [19965] * issm/trunk-jpl/src/m/plot/applyoptions.js (modified) * issm/trunk-jpl/src/m/plot/webgl.js (modified) CHG (javascript): Implementing expdisp for js plots. Tue, 19 Jan 2016 21:56:49 GMT dlcheng [19964] * issm/trunk-jpl/src/m/plot/gauge.js (added) ADD (javascript): js plots gauge wrapper implementation. Tue, 19 Jan 2016 16:02:18 GMT Mathieu Morlighem [19963] * issm/trunk-jpl/bin/vilje.m (deleted) DEL: should not be added to bin, alredy in src/m/classes/clusters Tue, 19 Jan 2016 14:45:23 GMT hakesson [19962] * issm/trunk-jpl/src/m/classes/clusters/vilje.m (added) new: adding new cluster file Tue, 19 Jan 2016 14:42:33 GMT hakesson [19961] * issm/trunk-jpl/bin/vilje.m (added) new: adding new cluster file Fri, 15 Jan 2016 23:45:51 GMT Mathieu Morlighem [19960] * issm/trunk-jpl/src/m/contrib/morphological (moved) CHG: moving morphological to contrib Fri, 15 Jan 2016 23:44:36 GMT Mathieu Morlighem [19959] * issm/trunk-jpl/src/m/solve/createxml.m (deleted) DEL: not needed anymore Fri, 15 Jan 2016 23:41:20 GMT Eric.Larour [19958] * issm/trunk-jpl/src/m/classes/SMBforcing.m (modified) * issm/trunk-jpl/src/m/classes/autodiff.m (modified) * issm/trunk-jpl/src/m/classes/basalforcings.m (modified) * issm/trunk-jpl/src/m/classes/clusters/generic.m (modified) * issm/trunk-jpl/src/m/classes/constants.m (modified) * issm/trunk-jpl/src/m/classes/damage.m (modified) * issm/trunk-jpl/src/m/classes/debug.m (modified) * issm/trunk-jpl/src/m/classes/flaim.m (modified) * issm/trunk-jpl/src/m/classes/flowequation.m (modified) * issm/trunk-jpl/src/m/classes/friction.m (modified) * issm/trunk-jpl/src/m/classes/frictioncoulomb.m (modified) * issm/trunk-jpl/src/m/classes/frictionweertman.m (modified) * issm/trunk-jpl/src/m/classes/geometry.m (modified) * issm/trunk-jpl/src/m/classes/gia.m (modified) * issm/trunk-jpl/src/m/classes/groundingline.m (modified) * issm/trunk-jpl/src/m/classes/hydrologyshreve.m (modified) * issm/trunk-jpl/src/m/classes/initialization.m (modified) * issm/trunk-jpl/src/m/classes/inversion.m (modified) * issm/trunk-jpl/src/m/classes/linearbasalforcings.m (modified) * issm/trunk-jpl/src/m/classes/mask.m (modified) * issm/trunk-jpl/src/m/classes/maskpsl.m (modified) * issm/trunk-jpl/src/m/classes/matdamageice.m (modified) * issm/trunk-jpl/src/m/classes/matice.m (modified) * issm/trunk-jpl/src/m/classes/mesh2dvertical.m (modified) * issm/trunk-jpl/src/m/classes/mesh3dprisms.m (modified) * issm/trunk-jpl/src/m/classes/mesh3dsurface.m (modified) * issm/trunk-jpl/src/m/classes/mesh3dtetras.m (modified) * issm/trunk-jpl/src/m/classes/miscellaneous.m (modified) * issm/trunk-jpl/src/m/classes/mismipbasalforcings.m (modified) * issm/trunk-jpl/src/m/classes/outputdefinition.m (modified) * issm/trunk-jpl/src/m/classes/qmu.m (modified) * issm/trunk-jpl/src/m/classes/rifts.m (modified) * issm/trunk-jpl/src/m/classes/settings.m (modified) * issm/trunk-jpl/src/m/classes/steadystate.m (modified) * issm/trunk-jpl/src/m/classes/stressbalance.m (modified) * issm/trunk-jpl/src/m/classes/thermal.m (modified) * issm/trunk-jpl/src/m/classes/timestepping.m (modified) * issm/trunk-jpl/src/m/classes/transient.m (modified) * issm/trunk-jpl/src/m/classes/verbose.m (modified) CHG: some cleanup. Taking out the createxml routines, the effort did ... Fri, 15 Jan 2016 21:05:33 GMT Mathieu Morlighem [19957] * issm/trunk-jpl/src/m/classes/model.m (modified) * issm/trunk-jpl/src/m/contrib/massbalance/contourmassbalance.m (modified) * issm/trunk-jpl/src/m/mesh/rifts/meshaddrifts.m (modified) BUG: prototype of contourenvelope has changed, updating accordingly Fri, 15 Jan 2016 18:19:34 GMT schlegel [19956] * issm/trunk-jpl/src/m/classes/clusters/lonestar.m (modified) CHG: update lonestar to SLURM Fri, 15 Jan 2016 18:15:22 GMT Eric.Larour [19955] * issm/trunk-jpl/src/m/classes/model.m (modified) * issm/trunk-jpl/src/m/exp/meshtodomain.m (added) * issm/trunk-jpl/src/m/miscellaneous/alignsegments.m (added) * issm/trunk-jpl/src/m/parameterization/contourenvelope.m (modified) CHG: contourenvelope now deals only with a mesh class instead of a ... Fri, 15 Jan 2016 18:12:32 GMT Eric.Larour [19954] * issm/trunk-jpl/src/m/mesh/augment2dmesh.m (added) * issm/trunk-jpl/src/m/mesh/mesh3dsurfaceplug2d.m (added) * issm/trunk-jpl/src/m/mesh/patchglobe.m (added) CHG: some voodoo magic about plugging 2d meshes into a globe mesh. Fri, 15 Jan 2016 02:32:11 GMT schlegel [19953] * issm/trunk-jpl/externalpackages/petsc/install-3.6-lonestar.sh (modified) CHG: new mpi call Fri, 15 Jan 2016 02:18:10 GMT schlegel [19952] * issm/trunk-jpl/externalpackages/petsc/install-3.6-lonestar.sh (modified) CHG: new lonestar5 system Wed, 13 Jan 2016 18:34:25 GMT Eric.Larour [19951] * issm/trunk-jpl/src/m/classes/miscellaneous.m (modified) CHG: fixed issue with testing against the type self.dummy