# # ChangeLog for / # # Generated by Trac 1.4.3 # 05/09/25 05:08:09 Fri, 23 Aug 2013 23:29:59 GMT Mathieu Morlighem [15908] * issm/trunk-jpl/src/m/solvers/mumpsoptions.m (modified) BUG: minor Fri, 23 Aug 2013 23:28:47 GMT Mathieu Morlighem [15907] * issm/trunk-jpl/src/m/classes/clusters/generic.m (modified) * issm/trunk-jpl/src/m/classes/clusters/generic.py (modified) * issm/trunk-jpl/src/m/classes/model/model.py (modified) * issm/trunk-jpl/src/m/classes/model/planet.m (modified) * issm/trunk-jpl/src/m/classes/qmu/@dakota_method/dmeth_params_write.m (modified) * issm/trunk-jpl/src/m/classes/toolkits.m (modified) * issm/trunk-jpl/src/m/classes/toolkits.py (modified) * issm/trunk-jpl/src/m/os/dakotaversion.m (deleted) * issm/trunk-jpl/src/m/os/dakotaversion.py (deleted) * issm/trunk-jpl/src/m/os/ismpi.m (deleted) * issm/trunk-jpl/src/m/os/ismpi.py (deleted) * issm/trunk-jpl/src/m/os/ismumps.m (deleted) * issm/trunk-jpl/src/m/os/ismumps.py (deleted) * issm/trunk-jpl/src/m/os/ispetsc.m (deleted) * issm/trunk-jpl/src/m/os/ispetsc.py (deleted) * issm/trunk-jpl/src/m/os/petscversion.m (deleted) * issm/trunk-jpl/src/m/os/petscversion.py (deleted) * issm/trunk-jpl/src/m/solve/solve.py (modified) * issm/trunk-jpl/src/m/solvers/asmoptions.py (modified) * issm/trunk-jpl/src/m/solvers/issmsolver.py (modified) * issm/trunk-jpl/src/m/solvers/jacobiasmoptions.py (modified) * issm/trunk-jpl/src/m/solvers/jacobicgoptions.py (modified) * issm/trunk-jpl/src/m/solvers/matlaboptions.py (modified) * issm/trunk-jpl/src/m/solvers/mumpsoptions.m (modified) * issm/trunk-jpl/src/m/solvers/mumpsoptions.py (modified) * issm/trunk-jpl/src/m/solvers/soroptions.py (modified) * issm/trunk-jpl/src/m/solvers/stokesoptions.m (modified) * issm/trunk-jpl/src/m/solvers/stokesoptions.py (modified) NEW: removed ismpi and other configuration tests Fri, 23 Aug 2013 22:52:14 GMT Mathieu Morlighem [15906] * issm/trunk-jpl/src/wrappers/IssmConfig/IssmConfig.cpp (modified) CHG: fixed string outputs Fri, 23 Aug 2013 22:43:00 GMT Mathieu Morlighem [15905] * issm/trunk-jpl/src/wrappers/IssmConfig (added) * issm/trunk-jpl/src/wrappers/IssmConfig/IssmConfig.cpp (added) * issm/trunk-jpl/src/wrappers/IssmConfig/IssmConfig.h (added) * issm/trunk-jpl/src/wrappers/matlab/Makefile.am (modified) * issm/trunk-jpl/src/wrappers/python/Makefile.am (modified) NEW: added IssmConfig that will replace ismpi and other functions Fri, 23 Aug 2013 22:21:31 GMT Eric.Larour [15904] * issm/trunk-jpl/externalpackages/snowpack/install.sh (modified) CHG: trying to compile binary Fri, 23 Aug 2013 20:39:18 GMT Mathieu Morlighem [15903] * issm/trunk-jpl/configs/config-linux64-larsen-petsc3.2.sh (deleted) * issm/trunk-jpl/configs/config-macosx64-ogive.sh (deleted) * issm/trunk-jpl/configs/config-walgreen.sh (deleted) DEL: removed some personnal config files Fri, 23 Aug 2013 20:29:21 GMT Mathieu Morlighem [15902] * issm/trunk-jpl/test/NightlyRun/test119.m (modified) * issm/trunk-jpl/test/NightlyRun/test119.py (modified) * issm/trunk-jpl/test/NightlyRun/test508.m (modified) * issm/trunk-jpl/test/NightlyRun/test508.py (modified) CHG: relaxing some tolerances Fri, 23 Aug 2013 20:28:21 GMT Mathieu Morlighem [15901] * issm/trunk-jpl/test/NightlyRun/IdToName.m (modified) * issm/trunk-jpl/test/NightlyRun/IdToName.py (modified) * issm/trunk-jpl/test/NightlyRun/test430.m (deleted) * issm/trunk-jpl/test/NightlyRun/test430.py (deleted) DEL: removed test430 that is always failing Fri, 23 Aug 2013 18:09:26 GMT Eric.Larour [15900] * issm/trunk-jpl/externalpackages/inishell (added) * issm/trunk-jpl/externalpackages/inishell/install.sh (added) * issm/trunk-jpl/externalpackages/inishell/scripts (added) * issm/trunk-jpl/externalpackages/inishell/scripts/inishell (added) CHG: inishell package to be used in conjunction with snowpack Fri, 23 Aug 2013 17:54:08 GMT Mathieu Morlighem [15899] * issm/trunk-jpl/src/c/classes/Elements/Tria.cpp (modified) BUG: fixing free surfaces Fri, 23 Aug 2013 17:03:26 GMT Mathieu Morlighem [15898] * issm/trunk-jpl/src/c/analyses/transient_core.cpp (modified) * issm/trunk-jpl/src/c/classes/Elements/Penta.cpp (modified) * issm/trunk-jpl/src/c/classes/Elements/Tria.cpp (modified) * issm/trunk-jpl/src/c/classes/ExternalResults/Results.cpp (modified) * issm/trunk-jpl/src/c/classes/ExternalResults/Results.h (modified) NEW: when a new result is added, we first check wether it already ... Fri, 23 Aug 2013 16:00:02 GMT Mathieu Morlighem [15897] * issm/trunk-jpl/src/c/classes/Elements/Penta.cpp (modified) * issm/trunk-jpl/src/c/classes/Elements/Penta.h (modified) * issm/trunk-jpl/src/c/shared/Elements/elements.h (modified) CHG: fixed compilation Fri, 23 Aug 2013 15:57:45 GMT jbondzio [15896] * issm/trunk-jpl/src/c/classes/Elements/Penta.cpp (modified) BUG: edited bugs in Penta::ComputeBasalMeltrate and ... Fri, 23 Aug 2013 15:36:26 GMT jbondzio [15895] * issm/trunk-jpl/src/c/classes/Elements/Penta.cpp (modified) CHG: updated thermal values now fed back into model. Fri, 23 Aug 2013 15:30:59 GMT jbondzio [15894] * issm/trunk-jpl/src/c/shared/Enum/EnumDefinitions.h (modified) ADD: BasalMeltrateEnum added for enthalpy Fri, 23 Aug 2013 14:26:55 GMT jbondzio [15893] * issm/trunk-jpl/src/c/classes/Elements/Penta.cpp (modified) ADD: Penta::DrainWaterfraction implements drainage of excess water ... Fri, 23 Aug 2013 14:25:18 GMT jbondzio [15892] * issm/trunk-jpl/src/c/classes/Elements/Penta.h (modified) ADD: Penta::DrainWaterfraction implements drainage of excess water ... Fri, 23 Aug 2013 13:46:48 GMT jbondzio [15891] * issm/trunk-jpl/src/c/shared/Elements/DrainageFunctionWaterfraction.cpp (added) NEW: DrainageFunctionWaterfraction(IssmDouble waterfraction) returns ... Fri, 23 Aug 2013 13:45:17 GMT jbondzio [15890] * issm/trunk-jpl/src/c/Makefile.am (modified) ADD: DrainageFunctionWaterfraction.cpp for enthalpy Fri, 23 Aug 2013 12:46:53 GMT jbondzio [15889] * issm/trunk-jpl/src/c/shared/Elements/elements.h (modified) ADD: DrainageFunctionWaterfraction(IssmDouble waterfraction) for ... Fri, 23 Aug 2013 05:19:49 GMT Eric.Larour [15888] * issm/trunk-jpl/externalpackages/snowpack/install.sh (modified) CHG: no need to verbose Makefile Fri, 23 Aug 2013 05:19:11 GMT Eric.Larour [15887] * issm/trunk-jpl/externalpackages/snowpack (modified) CHG: getting svn to ignore some files Fri, 23 Aug 2013 05:18:31 GMT Eric.Larour [15886] * issm/trunk-jpl/externalpackages/meteoio/makefiles (deleted) CHG: not needed Fri, 23 Aug 2013 05:18:15 GMT Eric.Larour [15885] * issm/trunk-jpl/externalpackages/snowpack (added) * issm/trunk-jpl/externalpackages/snowpack/install.sh (added) CHG: new snowpack model Fri, 23 Aug 2013 05:05:01 GMT Eric.Larour [15884] * issm/trunk-jpl/externalpackages/meteoio (modified) * issm/trunk-jpl/externalpackages/meteoio/install.sh (modified) CHG: specified target install Fri, 23 Aug 2013 00:26:48 GMT Mathieu Morlighem [15883] * issm/trunk-jpl/src/c/modules/ModelProcessorx/FreeSurfaceBase/UpdateElementsFreeSurfaceBase.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/FreeSurfaceTop/UpdateElementsFreeSurfaceTop.cpp (modified) CHG: return if model is 2d instead of erroring out Thu, 22 Aug 2013 20:55:44 GMT cborstad [15882] * issm/trunk-jpl/src/m/classes/masstransport.py (modified) BUG: python syntax Thu, 22 Aug 2013 19:21:07 GMT Mathieu Morlighem [15881] * issm/trunk-jpl/src/m/enum/MasstransportIsfreesurfaceEnum.m (added) CHG: synced Enums Thu, 22 Aug 2013 19:02:57 GMT Eric.Larour [15880] * issm/trunk-jpl/externalpackages/meteoio (added) * issm/trunk-jpl/externalpackages/meteoio/install.sh (added) * issm/trunk-jpl/externalpackages/meteoio/makefiles (added) * issm/trunk-jpl/externalpackages/meteoio/makefiles/Makefile (added) CHG: new MeteoIO package Thu, 22 Aug 2013 18:44:37 GMT Mathieu Morlighem [15879] * issm/trunk-jpl/src/m/enum/EnumDefinitions.py (modified) * issm/trunk-jpl/src/m/enum/FreeSurfaceBaseAnalysisEnum.m (added) * issm/trunk-jpl/src/m/enum/FreeSurfaceTopAnalysisEnum.m (added) NEW: added free surface solver for bottom and upper surface, not ... Thu, 22 Aug 2013 18:44:11 GMT Mathieu Morlighem [15878] * issm/trunk-jpl/src/m/classes/masstransport.m (modified) * issm/trunk-jpl/src/m/classes/masstransport.py (modified) NEW: added free surface solver for bottom and upper surface, not ... Thu, 22 Aug 2013 18:44:02 GMT Mathieu Morlighem [15877] * issm/trunk-jpl/src/c/Makefile.am (modified) * issm/trunk-jpl/src/c/analyses/AnalysisConfiguration.cpp (modified) * issm/trunk-jpl/src/c/analyses/masstransport_core.cpp (modified) * issm/trunk-jpl/src/c/analyses/transient_core.cpp (modified) * issm/trunk-jpl/src/c/classes/Elements/Penta.cpp (modified) * issm/trunk-jpl/src/c/classes/Elements/Penta.h (modified) * issm/trunk-jpl/src/c/classes/Elements/Tria.cpp (modified) * issm/trunk-jpl/src/c/classes/Elements/Tria.h (modified) * issm/trunk-jpl/src/c/classes/Node.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/CreateDataSets.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/CreateParameters.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/DistributeNumDofs.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/FreeSurfaceBase (added) * issm/trunk-jpl/src/c/modules/ModelProcessorx/FreeSurfaceBase/CreateConstraintsFreeSurfaceBase.cpp (added) * issm/trunk-jpl/src/c/modules/ModelProcessorx/FreeSurfaceBase/CreateLoadsFreeSurfaceBase.cpp (added) * issm/trunk-jpl/src/c/modules/ModelProcessorx/FreeSurfaceBase/CreateNodesFreeSurfaceBase.cpp (added) * issm/trunk-jpl/src/c/modules/ModelProcessorx/FreeSurfaceBase/UpdateElementsFreeSurfaceBase.cpp (added) * issm/trunk-jpl/src/c/modules/ModelProcessorx/FreeSurfaceTop (added) * issm/trunk-jpl/src/c/modules/ModelProcessorx/FreeSurfaceTop/CreateConstraintsFreeSurfaceTop.cpp (added) * issm/trunk-jpl/src/c/modules/ModelProcessorx/FreeSurfaceTop/CreateLoadsFreeSurfaceTop.cpp (added) * issm/trunk-jpl/src/c/modules/ModelProcessorx/FreeSurfaceTop/CreateNodesFreeSurfaceTop.cpp (added) * issm/trunk-jpl/src/c/modules/ModelProcessorx/FreeSurfaceTop/UpdateElementsFreeSurfaceTop.cpp (added) * issm/trunk-jpl/src/c/modules/ModelProcessorx/ModelProcessorx.h (modified) * issm/trunk-jpl/src/c/shared/Enum/EnumDefinitions.h (modified) * issm/trunk-jpl/src/c/shared/Enum/EnumToStringx.cpp (modified) * issm/trunk-jpl/src/c/shared/Enum/StringToEnumx.cpp (modified) NEW: added free surface solver for bottom and upper surface, not ... Thu, 22 Aug 2013 17:21:21 GMT Eric.Larour [15876] * issm/trunk-jpl/externalpackages/doxygen/install.sh (modified) CHG: relocated svn repository Thu, 22 Aug 2013 16:48:22 GMT Mathieu Morlighem [15875] * issm/trunk-jpl/test/NightlyRun/IdToName.m (modified) * issm/trunk-jpl/test/NightlyRun/IdToName.py (modified) CHG: renamed S3d -> FS Thu, 22 Aug 2013 16:21:33 GMT seroussi [15874] * issm/trunk-jpl/test/Archives/Archive327.nc (modified) * issm/trunk-jpl/test/Archives/Archive431.nc (modified) * issm/trunk-jpl/test/Archives/Archive432.nc (modified) CHG: updated archives with new enthalpy diffusion parameter Thu, 22 Aug 2013 15:35:27 GMT Mathieu Morlighem [15873] * issm/trunk-jpl/src/m/interp/InterpFromFile.m (modified) NEW: InterpFromFile should not be used anymore Thu, 22 Aug 2013 15:31:52 GMT Mathieu Morlighem [15872] * issm/trunk-jpl/src/c/classes/Elements/Penta.cpp (modified) * issm/trunk-jpl/src/c/classes/Elements/PentaRef.cpp (modified) * issm/trunk-jpl/src/c/classes/Elements/PentaRef.h (modified) CHG: fixing some stuff for Johannes Thu, 22 Aug 2013 15:30:46 GMT Mathieu Morlighem [15871] * issm/trunk-jpl/test/Archives/Archive430.nc (modified) CHG: updating Newton FS Thu, 22 Aug 2013 15:20:35 GMT Mathieu Morlighem [15870] * issm/trunk-jpl/src/c/classes/Elements/Penta.cpp (modified) * issm/trunk-jpl/src/c/classes/Materials/Matpar.cpp (modified) CHG: fixed some stuff from Johannes Thu, 22 Aug 2013 14:52:16 GMT jbondzio [15869] * issm/trunk-jpl/src/c/classes/Elements/Penta.cpp (modified) ADD: filled shell Penta::ComputeBasalMeltrate with content. To be ... Thu, 22 Aug 2013 10:01:25 GMT jbondzio [15868] * issm/trunk-jpl/src/c/classes/Elements/Penta.cpp (modified) ADD: empty shell for Penta::CalculateBasalMeltrate, required for ... Thu, 22 Aug 2013 10:00:29 GMT jbondzio [15867] * issm/trunk-jpl/src/c/classes/Elements/Penta.h (modified) ADD: method for Penta::CalculateBasalMeltrate for enthalpy module Thu, 22 Aug 2013 09:58:35 GMT jbondzio [15866] * issm/trunk-jpl/src/c/classes/Elements/Tria.h (modified) ADD: implementation of ComputeBasalMeltrate for Tria. Will return ... Thu, 22 Aug 2013 09:56:54 GMT jbondzio [15865] * issm/trunk-jpl/src/c/classes/Elements/Element.h (modified) ADD: virtual method Element::ComputeBasalMeltrate for enthalpy module Thu, 22 Aug 2013 08:59:09 GMT jbondzio [15864] * issm/trunk-jpl/src/c/shared/Elements/elements.h (modified) ADD: function declaration of LliboutryDuval(...) to elements.h Thu, 22 Aug 2013 08:15:22 GMT jbondzio [15863] * issm/trunk-jpl/src/c/classes/Materials/Matpar.cpp (modified) CHG changed value of diffusive constant for enthalpy to value from ... Wed, 21 Aug 2013 23:04:34 GMT Mathieu Morlighem [15862] * issm/trunk-jpl/src/c/classes/Constraints/SpcTransient.cpp (modified) * issm/trunk-jpl/src/c/classes/Node.cpp (modified) BUG: indexingupdate needs to be turned to true if Node::DofInFSet or ... Wed, 21 Aug 2013 22:44:01 GMT Mathieu Morlighem [15861] * issm/trunk-jpl/src/c/classes/Node.cpp (modified) * issm/trunk-jpl/src/c/classes/Node.h (modified) * issm/trunk-jpl/src/c/classes/Nodes.cpp (modified) * issm/trunk-jpl/src/c/classes/Nodes.h (modified) * issm/trunk-jpl/src/c/modules/NodesDofx/NodesDofx.cpp (modified) NEW: added node->indexingupdate flag so that dofs are not renumbered ... Wed, 21 Aug 2013 21:39:40 GMT Mathieu Morlighem [15860] * issm/trunk-jpl/src/m/classes/inversion.m (modified) * issm/trunk-jpl/src/m/classes/inversion.py (modified) NEW: added check so that inversions are only performed on SSA HO and ... Wed, 21 Aug 2013 21:17:34 GMT Mathieu Morlighem [15859] * issm/trunk-jpl/src/m/parameterization/setflowequation.m (modified) * issm/trunk-jpl/src/m/parameterization/setflowequation.py (modified) CHG: better error message for new model names Wed, 21 Aug 2013 21:12:16 GMT Mathieu Morlighem [15858] * issm/trunk-jpl/src/m/classes/clusters/pfe.m (modified) CHG: added alphatst@pbspl233 queue Wed, 21 Aug 2013 20:59:19 GMT Mathieu Morlighem [15857] * issm/trunk-jpl/src/c/modules/ModelProcessorx/StressbalanceVertical/CreateConstraintsStressbalanceVertical.cpp (modified) BUG: return if mesh is 2d Wed, 21 Aug 2013 20:41:47 GMT Mathieu Morlighem [15856] * issm/trunk-jpl/src/m/classes/oldclasses/diagnostic.m (modified) CHG: front cannot be retrieved anymore Wed, 21 Aug 2013 20:36:59 GMT Mathieu Morlighem [15855] * issm/trunk-jpl/src/m/classes/oldclasses/diagnostic.m (modified) CHG: front cannot be retrieved anymore Wed, 21 Aug 2013 18:43:09 GMT Mathieu Morlighem [15854] * issm/trunk-jpl/test/NightlyRun/test287.m (modified) * issm/trunk-jpl/test/NightlyRun/test287.py (modified) * issm/trunk-jpl/test/NightlyRun/test421.m (modified) * issm/trunk-jpl/test/NightlyRun/test421.py (modified) CHG: relaxed some tolerances Wed, 21 Aug 2013 18:27:27 GMT Mathieu Morlighem [15853] * issm/trunk-jpl/src/c/analyses/thermal_core.cpp (modified) * issm/trunk-jpl/src/c/classes/Elements/Element.h (modified) * issm/trunk-jpl/src/c/classes/Elements/Penta.cpp (modified) * issm/trunk-jpl/src/c/classes/Elements/Penta.h (modified) * issm/trunk-jpl/src/c/classes/Elements/Tria.h (modified) * issm/trunk-jpl/src/c/classes/FemModel.cpp (modified) * issm/trunk-jpl/src/c/classes/FemModel.h (modified) NEW: preparing Dynamic Basal Dirichlet conditions for enthalpy model ... Wed, 21 Aug 2013 17:54:20 GMT cborstad [15852] * issm/trunk-jpl/src/m/classes/matdamageice.py (modified) BUG: rheology fields should be rank-1 in python consistency check for ... Wed, 21 Aug 2013 14:36:43 GMT Mathieu Morlighem [15851] * issm/trunk-jpl/src/wrappers/matlab/Makefile.am (modified) * issm/trunk-jpl/src/wrappers/python/Makefile.am (modified) CHG: subdir-objects needs to be deactivated for now, as python and ... Tue, 20 Aug 2013 21:59:13 GMT Mathieu Morlighem [15850] * issm/trunk-jpl/src/c/modules/InputUpdateFromVectorDakotax/InputUpdateFromVectorDakotax.cpp (modified) CHG: fixed dakota prototype Tue, 20 Aug 2013 21:50:44 GMT seroussi [15849] * issm/trunk-jpl/src/c/analyses/DakotaSpawnCore.cpp (modified) * issm/trunk-jpl/src/c/analyses/ResetBoundaryConditions.cpp (modified) * issm/trunk-jpl/src/c/analyses/adjointbalancethickness_core.cpp (modified) * issm/trunk-jpl/src/c/analyses/adjointstressbalance_core.cpp (modified) * issm/trunk-jpl/src/c/analyses/balancethickness_core.cpp (modified) * issm/trunk-jpl/src/c/analyses/bedslope_core.cpp (modified) * issm/trunk-jpl/src/c/analyses/control_core.cpp (modified) * issm/trunk-jpl/src/c/analyses/controltao_core.cpp (modified) * issm/trunk-jpl/src/c/analyses/enthalpy_core.cpp (modified) * issm/trunk-jpl/src/c/analyses/gia_core.cpp (modified) * issm/trunk-jpl/src/c/analyses/hydrology_core.cpp (modified) * issm/trunk-jpl/src/c/analyses/masstransport_core.cpp (modified) * issm/trunk-jpl/src/c/analyses/steadystate_core.cpp (modified) * issm/trunk-jpl/src/c/analyses/stressbalance_core.cpp (modified) * issm/trunk-jpl/src/c/analyses/surfaceslope_core.cpp (modified) * issm/trunk-jpl/src/c/analyses/thermal_core.cpp (modified) * issm/trunk-jpl/src/c/analyses/transient_core.cpp (modified) * issm/trunk-jpl/src/c/classes/FemModel.cpp (modified) * issm/trunk-jpl/src/c/modules/ConstraintsStatex/ConstraintsStatex.cpp (modified) * issm/trunk-jpl/src/c/modules/ConstraintsStatex/ConstraintsStatex.h (modified) * issm/trunk-jpl/src/c/modules/GetSolutionFromInputsx/GetSolutionFromInputsx.cpp (modified) * issm/trunk-jpl/src/c/modules/GetSolutionFromInputsx/GetSolutionFromInputsx.h (modified) * issm/trunk-jpl/src/c/modules/GetVectorFromInputsx/GetVectorFromInputsx.cpp (modified) * issm/trunk-jpl/src/c/modules/GetVectorFromInputsx/GetVectorFromInputsx.h (modified) * issm/trunk-jpl/src/c/modules/InputToResultx/InputToResultx.cpp (modified) * issm/trunk-jpl/src/c/modules/InputToResultx/InputToResultx.h (modified) * issm/trunk-jpl/src/c/modules/InputUpdateFromConstantx/InputUpdateFromConstantx.cpp (modified) * issm/trunk-jpl/src/c/modules/InputUpdateFromConstantx/InputUpdateFromConstantx.h (modified) * issm/trunk-jpl/src/c/modules/InputUpdateFromDakotax/InputUpdateFromDakotax.cpp (modified) * issm/trunk-jpl/src/c/modules/InputUpdateFromDakotax/InputUpdateFromDakotax.h (modified) * issm/trunk-jpl/src/c/modules/InputUpdateFromMatrixDakotax/InputUpdateFromMatrixDakotax.cpp (modified) * issm/trunk-jpl/src/c/modules/InputUpdateFromMatrixDakotax/InputUpdateFromMatrixDakotax.h (modified) * issm/trunk-jpl/src/c/modules/InputUpdateFromSolutionx/InputUpdateFromSolutionx.cpp (modified) * issm/trunk-jpl/src/c/modules/InputUpdateFromSolutionx/InputUpdateFromSolutionx.h (modified) * issm/trunk-jpl/src/c/modules/InputUpdateFromVectorDakotax/InputUpdateFromVectorDakotax.cpp (modified) * issm/trunk-jpl/src/c/modules/InputUpdateFromVectorDakotax/InputUpdateFromVectorDakotax.h (modified) * issm/trunk-jpl/src/c/modules/InputUpdateFromVectorx/InputUpdateFromVectorx.cpp (modified) * issm/trunk-jpl/src/c/modules/InputUpdateFromVectorx/InputUpdateFromVectorx.h (modified) * issm/trunk-jpl/src/c/modules/ResetConstraintsx/ResetConstraintsx.cpp (modified) * issm/trunk-jpl/src/c/modules/ResetConstraintsx/ResetConstraintsx.h (modified) * issm/trunk-jpl/src/c/modules/SurfaceAreax/SurfaceAreax.cpp (modified) * issm/trunk-jpl/src/c/modules/SurfaceAreax/SurfaceAreax.h (modified) * issm/trunk-jpl/src/c/modules/SurfaceAverageVelMisfitx/SurfaceAverageVelMisfitx.cpp (modified) * issm/trunk-jpl/src/c/modules/SurfaceAverageVelMisfitx/SurfaceAverageVelMisfitx.h (modified) * issm/trunk-jpl/src/c/solutionsequences/solutionsequence_adjoint_linear.cpp (modified) * issm/trunk-jpl/src/c/solutionsequences/solutionsequence_hydro_nonlinear.cpp (modified) * issm/trunk-jpl/src/c/solutionsequences/solutionsequence_linear.cpp (modified) * issm/trunk-jpl/src/c/solutionsequences/solutionsequence_newton.cpp (modified) * issm/trunk-jpl/src/c/solutionsequences/solutionsequence_nonlinear.cpp (modified) * issm/trunk-jpl/src/c/solutionsequences/solutionsequence_stokescoupling_nonlinear.cpp (modified) * issm/trunk-jpl/src/c/solutionsequences/solutionsequence_thermal_nonlinear.cpp (modified) CHG: moved some modules back to src/modules and simplified some ... Tue, 20 Aug 2013 21:49:02 GMT Mathieu Morlighem [15848] * issm/trunk-jpl/src/c/Makefile.am (modified) * issm/trunk-jpl/src/wrappers/matlab/Makefile.am (modified) * issm/trunk-jpl/src/wrappers/python/Makefile.am (modified) CHG: in future versions of automake, option AUTOMAKE_OPTIONS = ... Tue, 20 Aug 2013 21:43:06 GMT Mathieu Morlighem [15847] * issm/trunk-jpl/src/c/classes/Elements/Penta.cpp (modified) CHG: use xIsNan instead of isnan for viscosity check Tue, 20 Aug 2013 16:53:36 GMT Eric.Larour [15846] * issm/trunk-jpl/src/c/toolkits/mpi/issmmpi.cpp (modified) CHG: implemented ISSM_MPI_Wtime for MPI case, temporary fix for the ... Tue, 20 Aug 2013 06:48:07 GMT Eric.Larour [15845] * issm/trunk-jpl/m4/issm_options.m4 (modified) * issm/trunk-jpl/src/c/Makefile.am (modified) CHG: added library dependencies for adjoinable mpi and adolc. ... Tue, 20 Aug 2013 02:50:22 GMT cborstad [15844] * issm/trunk-jpl/src/m/mech/mechanicalproperties.py (added) NEW: python version of mechanicalproperties function Tue, 20 Aug 2013 00:55:00 GMT Eric.Larour [15843] * issm/trunk-jpl/m4/issm_options.m4 (modified) * issm/trunk-jpl/src/c/classes/Elements/Penta.cpp (modified) * issm/trunk-jpl/src/c/kml/KMLFileReadUtils.cpp (modified) * issm/trunk-jpl/src/c/kml/KML_LineString.cpp (modified) * issm/trunk-jpl/src/c/kml/KML_LinearRing.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/Stressbalance/CreateLoadsStressbalance.cpp (modified) * issm/trunk-jpl/src/c/shared/Elements/Arrhenius.cpp (modified) * issm/trunk-jpl/src/c/shared/Elements/LliboutryDuval.cpp (modified) CHG: fixed a bunch of asserts that were not dealing with booleans. ... Mon, 19 Aug 2013 23:26:25 GMT cborstad [15842] * issm/trunk-jpl/src/m/materials/paterson.py (modified) CHG: reshape temperature so that resulting rigidity is in the same ... Mon, 19 Aug 2013 23:22:33 GMT Eric.Larour [15841] * issm/trunk-jpl/src/c/Makefile.am (modified) CHG: have to move some of the new issmmpi layer to the standard core ... Mon, 19 Aug 2013 23:19:00 GMT Eric.Larour [15840] * issm/trunk-jpl/src/c/toolkits/mpi/issmmpi.h (modified) CHG: missing std c++ header file Mon, 19 Aug 2013 22:42:21 GMT Eric.Larour [15839] * issm/trunk-jpl/src/c/Makefile.am (modified) * issm/trunk-jpl/src/c/analyses/EnvironmentInit.cpp (modified) * issm/trunk-jpl/src/c/analyses/analyses.h (modified) * issm/trunk-jpl/src/c/classes/FemModel.cpp (modified) * issm/trunk-jpl/src/c/classes/FemModel.h (modified) * issm/trunk-jpl/src/c/main/globals.h (modified) * issm/trunk-jpl/src/c/main/issm.cpp (modified) * issm/trunk-jpl/src/c/main/kriging.cpp (modified) * issm/trunk-jpl/src/c/shared/Exceptions/Exceptions.cpp (modified) * issm/trunk-jpl/src/c/shared/io/Comm/Comm.h (deleted) * issm/trunk-jpl/src/c/shared/io/Comm/IssmComm.cpp (modified) * issm/trunk-jpl/src/c/shared/io/Comm/IssmComm.h (modified) * issm/trunk-jpl/src/c/shared/io/Disk/WriteLockFile.cpp (modified) * issm/trunk-jpl/src/c/shared/io/Disk/pfopen.cpp (modified) * issm/trunk-jpl/src/c/shared/io/Print/PrintfFunction.cpp (modified) * issm/trunk-jpl/src/c/shared/io/io.h (modified) * issm/trunk-jpl/src/c/toolkits/issm/IssmToolkitUtils.cpp (modified) * issm/trunk-jpl/src/c/toolkits/mpi/commops/DetermineGlobalSize.cpp (modified) * issm/trunk-jpl/src/c/toolkits/mpi/commops/DetermineLocalSize.cpp (modified) * issm/trunk-jpl/src/c/toolkits/mpi/commops/DetermineRowRankFromLocalSize.cpp (modified) * issm/trunk-jpl/src/c/toolkits/mpi/commops/GetOwnershipBoundariesFromRange.cpp (modified) * issm/trunk-jpl/src/c/toolkits/mpi/commops/commops.h (modified) * issm/trunk-jpl/src/c/toolkits/mpi/issmmpi.h (modified) * issm/trunk-jpl/src/c/toolkits/mumps/MpiDenseMumpsSolve.cpp (modified) * issm/trunk-jpl/src/c/toolkits/petsc/objects/PetscSolver.cpp (modified) * issm/trunk-jpl/src/c/toolkits/petsc/patches/MatMultPatch.cpp (modified) * issm/trunk-jpl/src/c/toolkits/petsc/patches/MatToSerial.cpp (modified) * issm/trunk-jpl/src/c/toolkits/petsc/patches/NewMat.cpp (modified) * issm/trunk-jpl/src/c/toolkits/petsc/patches/NewVec.cpp (modified) * issm/trunk-jpl/src/c/toolkits/petsc/patches/VecToMPISerial.cpp (modified) * issm/trunk-jpl/src/c/toolkits/petsc/patches/petscpatches.h (modified) CHG: deleted Comm, as it is basically the same thing as what we ... Mon, 19 Aug 2013 22:15:59 GMT Eric.Larour [15838] * issm/trunk-jpl/src/c/Makefile.am (modified) * issm/trunk-jpl/src/c/analyses/DakotaSpawnCore.cpp (modified) * issm/trunk-jpl/src/c/analyses/EnvironmentFinalize.cpp (modified) * issm/trunk-jpl/src/c/analyses/EnvironmentInit.cpp (modified) * issm/trunk-jpl/src/c/classes/Constraints/Constraints.cpp (modified) * issm/trunk-jpl/src/c/classes/Elements/Elements.cpp (modified) * issm/trunk-jpl/src/c/classes/FemModel.cpp (modified) * issm/trunk-jpl/src/c/classes/IndependentObject.cpp (modified) * issm/trunk-jpl/src/c/classes/IoModel.cpp (modified) * issm/trunk-jpl/src/c/classes/Loads/Loads.cpp (modified) * issm/trunk-jpl/src/c/classes/Nodes.cpp (modified) * issm/trunk-jpl/src/c/classes/Patch.cpp (modified) * issm/trunk-jpl/src/c/classes/Profiler.cpp (modified) * issm/trunk-jpl/src/c/classes/Vertices.cpp (modified) * issm/trunk-jpl/src/c/modules/ConstraintsStatex/RiftConstraintsState.cpp (modified) * issm/trunk-jpl/src/c/modules/ConstraintsStatex/ThermalConstraintsState.cpp (modified) * issm/trunk-jpl/src/c/modules/ConstraintsStatex/ThermalIsPresent.cpp (modified) * issm/trunk-jpl/src/c/modules/DragCoefficientAbsGradientx/DragCoefficientAbsGradientx.cpp (modified) * issm/trunk-jpl/src/c/modules/GroundinglineMigrationx/GroundinglineMigrationx.cpp (modified) * issm/trunk-jpl/src/c/modules/Krigingx/pKrigingx.cpp (modified) * issm/trunk-jpl/src/c/modules/NodalValuex/NodalValuex.cpp (modified) * issm/trunk-jpl/src/c/modules/ParseToolkitsOptionsx/ParseToolkitsOptionsx.cpp (modified) * issm/trunk-jpl/src/c/modules/RheologyBbarAbsGradientx/RheologyBbarAbsGradientx.cpp (modified) * issm/trunk-jpl/src/c/modules/SurfaceAbsVelMisfitx/SurfaceAbsVelMisfitx.cpp (modified) * issm/trunk-jpl/src/c/modules/SurfaceAreax/SurfaceAreax.cpp (modified) * issm/trunk-jpl/src/c/modules/SurfaceAverageVelMisfitx/SurfaceAverageVelMisfitx.cpp (modified) * issm/trunk-jpl/src/c/modules/SurfaceLogVelMisfitx/SurfaceLogVelMisfitx.cpp (modified) * issm/trunk-jpl/src/c/modules/SurfaceLogVxVyMisfitx/SurfaceLogVxVyMisfitx.cpp (modified) * issm/trunk-jpl/src/c/modules/SurfaceRelVelMisfitx/SurfaceRelVelMisfitx.cpp (modified) * issm/trunk-jpl/src/c/modules/ThicknessAbsMisfitx/ThicknessAbsMisfitx.cpp (modified) * issm/trunk-jpl/src/c/modules/ThicknessAcrossGradientx/ThicknessAcrossGradientx.cpp (modified) * issm/trunk-jpl/src/c/modules/ThicknessAlongGradientx/ThicknessAlongGradientx.cpp (modified) * issm/trunk-jpl/src/c/shared/Numerics/types.h (modified) * issm/trunk-jpl/src/c/shared/io/Comm/Comm.h (modified) * issm/trunk-jpl/src/c/shared/io/Comm/CommDef.h (deleted) * issm/trunk-jpl/src/c/shared/io/Comm/IssmComm.cpp (modified) * issm/trunk-jpl/src/c/shared/io/Comm/IssmComm.h (modified) * issm/trunk-jpl/src/c/shared/io/Disk/pfopen.cpp (modified) * issm/trunk-jpl/src/c/toolkits/issm/Bucket.h (modified) * issm/trunk-jpl/src/c/toolkits/issm/IssmMpiDenseMat.h (modified) * issm/trunk-jpl/src/c/toolkits/issm/IssmMpiVec.h (modified) * issm/trunk-jpl/src/c/toolkits/mpi/commops/DetermineGlobalSize.cpp (modified) * issm/trunk-jpl/src/c/toolkits/mpi/commops/DetermineLocalSize.cpp (modified) * issm/trunk-jpl/src/c/toolkits/mpi/commops/DetermineRowRankFromLocalSize.cpp (modified) * issm/trunk-jpl/src/c/toolkits/mpi/commops/GetOwnershipBoundariesFromRange.cpp (modified) * issm/trunk-jpl/src/c/toolkits/mumps/MpiDenseMumpsSolve.cpp (modified) * issm/trunk-jpl/src/c/toolkits/petsc/patches/MatMultPatch.cpp (modified) * issm/trunk-jpl/src/c/toolkits/petsc/patches/MatToSerial.cpp (modified) * issm/trunk-jpl/src/c/toolkits/petsc/patches/NewMat.cpp (modified) * issm/trunk-jpl/src/c/toolkits/petsc/patches/NewVec.cpp (modified) * issm/trunk-jpl/src/c/toolkits/petsc/patches/VecToMPISerial.cpp (modified) * issm/trunk-jpl/src/c/toolkits/plapack/patches/PlapackInvertMatrix.cpp (modified) * issm/trunk-jpl/src/c/toolkits/toolkits.h (modified) CHG: initial conversion from mpi to issmmpi layer. Starting ... Mon, 19 Aug 2013 21:13:48 GMT Eric.Larour [15837] * issm/trunk-jpl/src/c/toolkits/mpi/issmmpi.cpp (modified) CHG: finished setting up issmmpi.cpp, starting code-wide conversion ... Mon, 19 Aug 2013 20:46:32 GMT Eric.Larour [15836] * issm/trunk-jpl/src/c/Makefile.am (modified) * issm/trunk-jpl/src/c/toolkits/mpi/issmmpi.cpp (added) * issm/trunk-jpl/src/c/toolkits/mpi/issmmpi.h (added) * issm/trunk-jpl/src/c/toolkits/mpi/mpiincludes.h (deleted) CHG: starting transition from mpi to issm mpi Mon, 19 Aug 2013 20:17:39 GMT Eric.Larour [15835] * issm/trunk-jpl/src/c/Makefile.am (modified) CHG: change of mpi/patches to mpi/commops Mon, 19 Aug 2013 20:16:52 GMT Eric.Larour [15834] * issm/trunk-jpl/src/c/toolkits/mpi/commops (moved) * issm/trunk-jpl/src/c/toolkits/mpi/commops/commops.h (moved) * issm/trunk-jpl/src/c/toolkits/mpi/mpiincludes.h (modified) CHG: temporary change Mon, 19 Aug 2013 19:15:29 GMT Eric.Larour [15833] * issm/trunk-jpl/test/NightlyRun/test104.m (modified) CHG: fixed typo in test104. Helene, Mathieu, please check on this Fri, 16 Aug 2013 23:29:00 GMT cborstad [15832] * issm/trunk-jpl/src/m/mech/steadystateiceshelftemp.m (modified) * issm/trunk-jpl/src/m/mech/steadystateiceshelftemp.py (added) NEW: python version of function to calculate steady state ice shelf ... Fri, 16 Aug 2013 21:52:26 GMT cborstad [15831] * issm/trunk-jpl/src/m/mech/steadystateiceshelftemp.m (added) NEW: function to calculate steady state ice shelf temperature as a ... Fri, 16 Aug 2013 21:50:18 GMT cborstad [15830] * issm/trunk-jpl/src/m/mech/strainrateuncert.m (modified) updated strain rate uncertainty calculation Fri, 16 Aug 2013 07:59:41 GMT jbondzio [15829] * issm/trunk-jpl/src/m/enum/EnumDefinitions.py (modified) Added LliboutryDuvalEnum for python Thu, 15 Aug 2013 13:02:58 GMT jbondzio [15828] * issm/trunk-jpl/src/m/enum/LliboutryDuvalEnum.m (added) added LliboutryDuvalEnum.m in case that ... Thu, 15 Aug 2013 12:53:19 GMT jbondzio [15827] * issm/trunk-jpl/src/c/shared/Enum/EnumDefinitions.h (modified) Added LliboutryDuvalEnum for LliboutryDuval rheology (required for ... Thu, 15 Aug 2013 08:58:12 GMT jbondzio [15826] * issm/trunk-jpl/src/m/classes/matdamageice.py (modified) Added LliboutryDuval rheology to checkconsistency and disp for ... Thu, 15 Aug 2013 08:57:35 GMT jbondzio [15825] * issm/trunk-jpl/src/m/classes/matdamageice.m (modified) Added LliboutryDuval rheology to checkconsistency and disp for ... Thu, 15 Aug 2013 08:55:41 GMT jbondzio [15824] * issm/trunk-jpl/src/m/classes/matice.py (modified) Added LliboutryDuval rheology to checkconsistency and disp for python ... Thu, 15 Aug 2013 08:54:50 GMT jbondzio [15823] * issm/trunk-jpl/src/m/classes/matice.m (modified) Added LliboutryDuval rheology to checkconsistency and disp. Wed, 14 Aug 2013 15:11:24 GMT seroussi [15822] * issm/trunk-jpl/scripts/dailyrun.sh (deleted) * issm/trunk-jpl/scripts/errlog_process.sh (deleted) * issm/trunk-jpl/scripts/issm_webpdf.sh (deleted) * issm/trunk-jpl/scripts/tai (modified) * issm/trunk-jpl/scripts/vie (modified) * issm/trunk-jpl/scripts/vil (modified) DEL: removed some useless scripts, and updated vie vil and tai Tue, 13 Aug 2013 22:21:00 GMT Eric.Larour [15821] * issm/trunk-jpl/externalpackages/adolc/install.sh (modified) * issm/trunk-jpl/externalpackages/adolc/update-existing.sh (modified) CHG: setting libdir Tue, 13 Aug 2013 18:55:29 GMT seroussi [15820] * issm/trunk-jpl/test/NightlyRun/test201.m (modified) * issm/trunk-jpl/test/NightlyRun/test202.m (modified) * issm/trunk-jpl/test/NightlyRun/test203.m (modified) * issm/trunk-jpl/test/NightlyRun/test204.m (modified) * issm/trunk-jpl/test/NightlyRun/test221.m (modified) * issm/trunk-jpl/test/NightlyRun/test421.m (modified) * issm/trunk-jpl/test/NightlyRun/test422.m (modified) CHG: fixed wrong commits Tue, 13 Aug 2013 18:53:20 GMT seroussi [15819] * issm/trunk-jpl/test/NightlyRun/test104.m (modified) FIX: wrong commit--This line, and those below, will be ignored-- M ... Tue, 13 Aug 2013 18:52:48 GMT seroussi [15818] * issm/trunk-jpl/test/NightlyRun/test104.m (modified) * issm/trunk-jpl/test/NightlyRun/test201.m (modified) * issm/trunk-jpl/test/NightlyRun/test202.m (modified) * issm/trunk-jpl/test/NightlyRun/test203.m (modified) * issm/trunk-jpl/test/NightlyRun/test204.m (modified) * issm/trunk-jpl/test/NightlyRun/test221.m (modified) * issm/trunk-jpl/test/NightlyRun/test225.py (modified) * issm/trunk-jpl/test/NightlyRun/test421.m (modified) * issm/trunk-jpl/test/NightlyRun/test421.py (modified) * issm/trunk-jpl/test/NightlyRun/test422.m (modified) * issm/trunk-jpl/test/NightlyRun/test422.py (modified) * issm/trunk-jpl/test/NightlyRun/test429.m (modified) * issm/trunk-jpl/test/NightlyRun/test429.py (modified) * issm/trunk-jpl/test/NightlyRun/test506.m (modified) * issm/trunk-jpl/test/NightlyRun/test506.py (modified) * issm/trunk-jpl/test/NightlyRun/test513.m (modified) CHG: updated tolerances for spc Tue, 13 Aug 2013 18:26:07 GMT cborstad [15817] * issm/trunk-jpl/src/m/inversions/misfit.m (modified) Diagnostic -> Stressbalance Tue, 13 Aug 2013 17:49:51 GMT Mathieu Morlighem [15816] * issm/trunk-jpl/src/m/boundaryconditions/SetIceShelfBC.py (modified) * issm/trunk-jpl/src/m/boundaryconditions/SetMarineIceSheetBC.py (modified) BUG: hopefully fixed python spc Tue, 13 Aug 2013 17:29:19 GMT Mathieu Morlighem [15815] * issm/trunk-jpl/src/m/boundaryconditions/SetIceShelfBC.py (modified) * issm/trunk-jpl/src/m/boundaryconditions/SetMarineIceSheetBC.py (modified) BUG: still fixing python BC Tue, 13 Aug 2013 17:24:55 GMT Mathieu Morlighem [15814] * issm/trunk-jpl/src/c/classes/Elements/Penta.cpp (modified) * issm/trunk-jpl/src/c/classes/Elements/Tria.cpp (modified) BUG: fixing seg fault in 3d GL migration module Tue, 13 Aug 2013 17:12:29 GMT Mathieu Morlighem [15813] * issm/trunk-jpl/externalpackages/vim/addons/vim/syntax/c.vim (modified) CHG: updating syntax highlight Tue, 13 Aug 2013 16:10:36 GMT seroussi [15812] * issm/trunk-jpl/src/m/boundaryconditions/SetIceShelfBC.py (modified) * issm/trunk-jpl/src/m/boundaryconditions/SetMarineIceSheetBC.py (modified) BUG: indices in pythoon and matlab differ by 1 Tue, 13 Aug 2013 15:54:30 GMT seroussi [15811] * issm/trunk-jpl/test/NightlyRun/test225.m (modified) * issm/trunk-jpl/test/NightlyRun/test274.m (modified) * issm/trunk-jpl/test/NightlyRun/test287.m (modified) * issm/trunk-jpl/test/NightlyRun/test290.m (modified) * issm/trunk-jpl/test/NightlyRun/test421.m (modified) * issm/trunk-jpl/test/NightlyRun/test422.m (modified) * issm/trunk-jpl/test/NightlyRun/test506.m (modified) CHG: updated matlab tolerances with new spc up to the front Tue, 13 Aug 2013 14:33:01 GMT Mathieu Morlighem [15810] * issm/trunk-jpl/src/c/Makefile.am (modified) CHG: reverted Makefile.am and added shared/Elements/LliboutryDuval.cpp Tue, 13 Aug 2013 09:34:18 GMT jbondzio [15809] * issm/trunk-jpl/src/c/Makefile.am (modified) Added c/shared/Elements/LliboutryDuval.cpp to Makefile.am