# # ChangeLog for / # # Generated by Trac 1.4.3 # 05/15/25 22:20:24 Tue, 13 Nov 2012 15:52:34 GMT Mathieu Morlighem [13945] * issm/trunk-jpl/test/NightlyRun/test119.m (modified) * issm/trunk-jpl/test/NightlyRun/test119.py (modified) * issm/trunk-jpl/test/NightlyRun/test237.m (modified) * issm/trunk-jpl/test/NightlyRun/test237.py (modified) * issm/trunk-jpl/test/NightlyRun/test505.m (modified) * issm/trunk-jpl/test/NightlyRun/test505.py (modified) CHG: relaxed tolerances Tue, 13 Nov 2012 03:12:25 GMT Mathieu Morlighem [13944] * issm/trunk-jpl/test/NightlyRun/test237.m (modified) * issm/trunk-jpl/test/NightlyRun/test237.py (modified) * issm/trunk-jpl/test/NightlyRun/test312.m (modified) * issm/trunk-jpl/test/NightlyRun/test312.py (modified) * issm/trunk-jpl/test/NightlyRun/test505.m (modified) * issm/trunk-jpl/test/NightlyRun/test505.py (modified) CHG: relaxed some tolerances Tue, 13 Nov 2012 02:14:50 GMT glperez [13943] * issm/trunk-jpl/externalpackages/gsl/install-android.sh (modified) CHG: Android build uses GSL shared libraries for BLAS support. ... Mon, 12 Nov 2012 22:22:59 GMT jschierm [13942] * issm/trunk-jpl/src/m/io/loadmodel.py (added) NEW: Python version of loadmodel. Mon, 12 Nov 2012 22:01:38 GMT Mathieu Morlighem [13941] * issm/trunk-jpl/src/c/classes/FemModel.cpp (modified) * issm/trunk-jpl/src/c/modules/CreateNodalConstraintsx/CreateNodalConstraintsx.cpp (modified) * issm/trunk-jpl/src/c/modules/Reduceloadx/Reduceloadx.cpp (modified) * issm/trunk-jpl/src/c/modules/Reducevectorgtofx/Reducevectorgtofx.cpp (modified) * issm/trunk-jpl/src/c/modules/Reducevectorgtosx/Reducevectorgtosx.cpp (modified) CHG: switching new allocation back on Mon, 12 Nov 2012 21:40:53 GMT Mathieu Morlighem [13940] * issm/trunk-jpl/src/c/solvers/solver_newton.cpp (modified) CHG: CreateJacobianMatrix is now a method of FemModel Mon, 12 Nov 2012 21:34:54 GMT Mathieu Morlighem [13939] * issm/trunk-jpl/src/c/Makefile.am (modified) * issm/trunk-jpl/src/c/classes/FemModel.cpp (modified) * issm/trunk-jpl/src/c/classes/FemModel.h (modified) * issm/trunk-jpl/src/c/modules/CreateJacobianMatrixx (deleted) * issm/trunk-jpl/src/c/modules/Reduceloadx/Reduceloadx.cpp (modified) * issm/trunk-jpl/src/c/modules/Reducevectorgtofx/Reducevectorgtofx.cpp (modified) * issm/trunk-jpl/src/c/modules/modules.h (modified) CHG: reverting back to old allocation, Newton's module needs to be ... Mon, 12 Nov 2012 19:55:44 GMT Mathieu Morlighem [13938] * issm/trunk-jpl/src/c/classes/FemModel.cpp (modified) * issm/trunk-jpl/src/c/modules/Reducevectorgtofx/Reducevectorgtofx.cpp (modified) NEW: turning on new allocation module (will look at NR to see if all ... Mon, 12 Nov 2012 19:47:45 GMT jschierm [13937] * issm/trunk-jpl/src/m/io/loadvars.py (added) * issm/trunk-jpl/src/m/io/savevars.py (added) NEW: Python functions to save and load variables (including models) ... Sat, 10 Nov 2012 02:11:24 GMT Eric.Larour [13936] * issm/trunk-jpl/configs/config-arm-linux.sh (modified) * issm/trunk-jpl/configure.ac (modified) * issm/trunk-jpl/src/Makefile.am (modified) * issm/trunk-jpl/src/c/Makefile.am (modified) CHG: new Makefiles to reach the ISSM app in src/android Sat, 10 Nov 2012 02:10:23 GMT Eric.Larour [13935] * issm/trunk-jpl/m4/issm_options.m4 (modified) CHG: new options for ISSM JNI and EXE Sat, 10 Nov 2012 02:10:03 GMT Eric.Larour [13934] * issm/trunk-jpl/test/NightlyRun/runme.py (modified) CHG: get adolc python benchmarks to be possible Sat, 10 Nov 2012 02:08:54 GMT Eric.Larour [13933] * issm/trunk-jpl/src/android/ISSM/src/com/example/issm/FacLib.java (deleted) CHG: replaced by IssmJni Sat, 10 Nov 2012 02:07:00 GMT Eric.Larour [13932] * issm/trunk-jpl/src/android (modified) * issm/trunk-jpl/src/android/Makefile.am (added) CHG: get svn to ignore some files. Sat, 10 Nov 2012 02:05:53 GMT Eric.Larour [13931] * issm/trunk-jpl/src/android/ISSM (modified) * issm/trunk-jpl/src/android/ISSM/Makefile.am (added) * issm/trunk-jpl/src/android/ISSM/jni/Android.mk (modified) * issm/trunk-jpl/src/android/ISSM/jni/Main.cpp (modified) * issm/trunk-jpl/src/android/ISSM/jni/com_example_issm_FacLib.h (deleted) * issm/trunk-jpl/src/android/ISSM/jni/com_example_issm_IssmJni.h (added) * issm/trunk-jpl/src/android/ISSM/jni/issmlib/Android.mk (modified) * issm/trunk-jpl/src/android/ISSM/obj (deleted) * issm/trunk-jpl/src/android/ISSM/src/com/example/issm/ISSM.java (modified) * issm/trunk-jpl/src/android/ISSM/src/com/example/issm/IssmJni.java (added) CHG: modified process to create ISSM app, using the autotools Sat, 10 Nov 2012 02:01:04 GMT Eric.Larour [13930] * issm/trunk-jpl/src/android/helloworld/ISSM/bin (modified) * issm/trunk-jpl/src/android/helloworld/ISSM/gen/com/example/issm (modified) * issm/trunk-jpl/src/android/helloworld/My First App/gen/com/example/my/first/app (modified) CHG: getting svn to ignore some files Sat, 10 Nov 2012 01:57:16 GMT Eric.Larour [13929] * issm/trunk-jpl/src/android/helloworld/ISSM/bin/classes.dex (deleted) CHG: getting svn to ignore some files Sat, 10 Nov 2012 01:18:10 GMT Eric.Larour [13928] * issm/trunk-jpl/src/android/ISSM/jni/issmlib/Android.mk (modified) * issm/trunk-jpl/src/android/ISSM/jni/issmlib/include (deleted) CHG: not needed anymore Sat, 10 Nov 2012 00:51:36 GMT Eric.Larour [13927] * issm/trunk-jpl/src/android/ISSM/jni/issmlib/libISSMCore.a (deleted) CHG: not needed here anymore Sat, 10 Nov 2012 00:45:53 GMT Mathieu Morlighem [13926] * issm/trunk-jpl/test/Archives/Archive237.nc (modified) CHG: updated archive Fri, 09 Nov 2012 23:25:17 GMT Mathieu Morlighem [13925] * issm/trunk-jpl/src/c/Container/Loads.cpp (modified) * issm/trunk-jpl/src/c/Container/Loads.h (modified) * issm/trunk-jpl/src/c/classes/FemModel.cpp (modified) * issm/trunk-jpl/src/c/classes/objects/Loads/Icefront.cpp (modified) * issm/trunk-jpl/src/c/classes/objects/Loads/Icefront.h (modified) * issm/trunk-jpl/src/c/classes/objects/Loads/Load.h (modified) * issm/trunk-jpl/src/c/classes/objects/Loads/Numericalflux.cpp (modified) * issm/trunk-jpl/src/c/classes/objects/Loads/Numericalflux.h (modified) * issm/trunk-jpl/src/c/classes/objects/Loads/Pengrid.cpp (modified) * issm/trunk-jpl/src/c/classes/objects/Loads/Pengrid.h (modified) * issm/trunk-jpl/src/c/classes/objects/Loads/Penpair.cpp (modified) * issm/trunk-jpl/src/c/classes/objects/Loads/Penpair.h (modified) * issm/trunk-jpl/src/c/classes/objects/Loads/Riftfront.cpp (modified) * issm/trunk-jpl/src/c/classes/objects/Loads/Riftfront.h (modified) * issm/trunk-jpl/src/c/modules/Reducevectorgtofx/Reducevectorgtofx.cpp (modified) * issm/trunk-jpl/src/c/toolkits/petsc/objects/PetscMat.cpp (modified) NEW: Finished stiffness allocation matrix (still turned off), also, ... Fri, 09 Nov 2012 23:12:37 GMT jschierm [13924] * issm/trunk-jpl/test/NightlyRun/test3015.py (modified) * issm/trunk-jpl/test/NightlyRun/test3020.py (modified) FIX: In python tests 3015 and 3020, indices get converted to base 0 ... Fri, 09 Nov 2012 23:05:28 GMT cborstad [13923] * issm/trunk-jpl/src/wrappers/InterpFromGridToMesh/InterpFromGridToMesh.cpp (modified) * issm/trunk-jpl/src/wrappers/python/Makefile.am (modified) CHG: added python support for InterpFromGridtoMesh in wrappers Fri, 09 Nov 2012 21:38:42 GMT Mathieu Morlighem [13922] * issm/trunk-jpl/test/NightlyRun/test410.m (modified) * issm/trunk-jpl/test/NightlyRun/test410.py (modified) CHG: relaxed tolerances Fri, 09 Nov 2012 02:18:42 GMT schlegel [13921] * issm/trunk-jpl/src/m/classes/clusters/discover.m (modified) BUG: wrong directory for module Fri, 09 Nov 2012 02:13:35 GMT schlegel [13920] * issm/trunk-jpl/src/m/classes/clusters/discover.m (modified) CHG: need new compiler for compatibility with GEOS-5 modules Fri, 09 Nov 2012 02:10:14 GMT schlegel [13919] * issm/trunk-jpl/configs/config-discover.sh (modified) CHG: add flag needed to avoid error during compile Fri, 09 Nov 2012 00:02:41 GMT Mathieu Morlighem [13918] * issm/trunk-jpl/src/c/classes/FemModel.cpp (modified) NEW: final touches to matrix preallocation Thu, 08 Nov 2012 23:29:16 GMT cborstad [13917] * issm/trunk-jpl/src/m/mesh/bamg.py (modified) BUG: update counter with += not =+ Thu, 08 Nov 2012 23:15:00 GMT Mathieu Morlighem [13916] * issm/trunk-jpl/src/c/Container/Loads.cpp (modified) * issm/trunk-jpl/src/c/Container/Loads.h (modified) NEW: added memory allocation methods for loads Thu, 08 Nov 2012 23:11:19 GMT Mathieu Morlighem [13915] * issm/trunk-jpl/src/c/classes/objects/Loads/Icefront.cpp (modified) * issm/trunk-jpl/src/c/classes/objects/Loads/Icefront.h (modified) * issm/trunk-jpl/src/c/classes/objects/Loads/Load.h (modified) * issm/trunk-jpl/src/c/classes/objects/Loads/Numericalflux.cpp (modified) * issm/trunk-jpl/src/c/classes/objects/Loads/Numericalflux.h (modified) * issm/trunk-jpl/src/c/classes/objects/Loads/Pengrid.cpp (modified) * issm/trunk-jpl/src/c/classes/objects/Loads/Pengrid.h (modified) * issm/trunk-jpl/src/c/classes/objects/Loads/Penpair.cpp (modified) * issm/trunk-jpl/src/c/classes/objects/Loads/Penpair.h (modified) * issm/trunk-jpl/src/c/classes/objects/Loads/Riftfront.cpp (modified) * issm/trunk-jpl/src/c/classes/objects/Loads/Riftfront.h (modified) NEW: added memory allocation methods for loads Thu, 08 Nov 2012 22:55:06 GMT Mathieu Morlighem [13914] * issm/trunk-jpl/src/c/shared/Elements/PrintArrays.cpp (modified) NEW: printsparsity now prints number of non zero per row Thu, 08 Nov 2012 20:53:45 GMT schlegel [13913] * issm/trunk-jpl/configs/config-pleiades-petsc3.3.sh (added) NEW: add install script to match petsc3.3 Thu, 08 Nov 2012 20:49:23 GMT schlegel [13912] * issm/trunk-jpl/externalpackages/dakota/install-pleiades-petsc3.3.sh (added) NEW: add install script to match petsc3.3 Thu, 08 Nov 2012 20:46:04 GMT schlegel [13911] * issm/trunk-jpl/externalpackages/petsc/install-3.3-pleiades.sh (modified) CHG: working config file for petsc 3.3 Thu, 08 Nov 2012 20:11:30 GMT cborstad [13910] * issm/trunk-jpl/src/m/mesh/bamg.py (modified) BUG: reshape arrays for call to ContourToNodes and pass only filename ... Thu, 08 Nov 2012 18:20:46 GMT Mathieu Morlighem [13909] * issm/trunk-jpl/src/c/classes/FemModel.cpp (modified) * issm/trunk-jpl/src/c/classes/objects/Elements/Penta.cpp (modified) * issm/trunk-jpl/src/c/classes/objects/Elements/PentaHook.cpp (modified) * issm/trunk-jpl/src/c/classes/objects/Elements/PentaHook.h (modified) * issm/trunk-jpl/src/c/classes/objects/Elements/Tria.cpp (modified) CHG: debugged matrix allocation for BedSlopes: confused between ... Thu, 08 Nov 2012 18:18:59 GMT cborstad [13908] * issm/trunk-jpl/configs/config-macosx64-chris-python.sh (modified) CHG: plapack not needed Thu, 08 Nov 2012 17:36:57 GMT Mathieu Morlighem [13907] * issm/trunk-jpl/src/c/Container/Nodes.cpp (modified) CHG: testing whether a couple of lines of code is necessary (if ... Thu, 08 Nov 2012 04:58:27 GMT Eric.Larour [13906] * issm/trunk-jpl/configs/config-macosx64-larour-ad.sh (modified) * issm/trunk-jpl/src/wrappers/python/Makefile.am (modified) CHG: missing WRAPPERS symbol for compilation of python modules. Thu, 08 Nov 2012 04:56:58 GMT Eric.Larour [13905] * issm/trunk-jpl/src/ad/todo (modified) CHG: ad todo Thu, 08 Nov 2012 01:03:22 GMT Mathieu Morlighem [13904] * issm/trunk-jpl/src/c/classes/objects/Elements/Penta.cpp (modified) * issm/trunk-jpl/src/c/classes/objects/Elements/Tria.cpp (modified) CHG: removed some useless code Thu, 08 Nov 2012 00:43:35 GMT Mathieu Morlighem [13903] * issm/trunk-jpl/src/c/classes/objects/Elements/Penta.cpp (modified) * issm/trunk-jpl/src/c/classes/objects/Elements/Penta.h (modified) * issm/trunk-jpl/src/c/classes/objects/Elements/Tria.cpp (modified) NEW: added SetwiseNodeConnectivity for Penta Thu, 08 Nov 2012 00:26:44 GMT Mathieu Morlighem [13902] * issm/trunk-jpl/src/c/classes/FemModel.cpp (modified) BUG: fixed issue in matrix preallocation, number of non zeros must be ... Thu, 08 Nov 2012 00:23:29 GMT Mathieu Morlighem [13901] * issm/trunk-jpl/src/c/shared/Elements/PrintArrays.cpp (modified) * issm/trunk-jpl/src/c/shared/Elements/elements.h (modified) NEW: added printsparsity, very useful to debug memory allocation module Thu, 08 Nov 2012 00:04:40 GMT jschierm [13900] * issm/trunk-jpl/test/NightlyRun/test3001.py (modified) * issm/trunk-jpl/test/NightlyRun/test3002.py (modified) * issm/trunk-jpl/test/NightlyRun/test3003.py (modified) * issm/trunk-jpl/test/NightlyRun/test3004.py (modified) * issm/trunk-jpl/test/NightlyRun/test3005.py (modified) * issm/trunk-jpl/test/NightlyRun/test3006.py (modified) * issm/trunk-jpl/test/NightlyRun/test3007.py (modified) * issm/trunk-jpl/test/NightlyRun/test3008.py (modified) * issm/trunk-jpl/test/NightlyRun/test3009.py (modified) * issm/trunk-jpl/test/NightlyRun/test3010.py (modified) * issm/trunk-jpl/test/NightlyRun/test3015.m (modified) * issm/trunk-jpl/test/NightlyRun/test3015.py (added) * issm/trunk-jpl/test/NightlyRun/test3019.m (modified) * issm/trunk-jpl/test/NightlyRun/test3019.py (added) * issm/trunk-jpl/test/NightlyRun/test3020.m (modified) * issm/trunk-jpl/test/NightlyRun/test3020.py (added) NEW: Working (up to ADOLC) test3???.py (plus cosmetic Matlab changes). Wed, 07 Nov 2012 23:57:06 GMT jschierm [13899] * issm/trunk-jpl/src/m/solve/WriteData.py (modified) FIX: Try again to allow WriteData.py for lists and tuples. Wed, 07 Nov 2012 23:55:45 GMT bduong [13898] * issm/trunk-jpl/src/android/helloworld/ISSM/src/com/example/issm/MyGLRenderer.java (modified) New triangle added Wed, 07 Nov 2012 23:10:54 GMT Mathieu Morlighem [13897] * issm/trunk-jpl/src/c/toolkits/petsc/patches/NewMat.cpp (modified) CHG: the otehr way around for petsc dev Wed, 07 Nov 2012 22:44:37 GMT Eric.Larour [13896] * issm/trunk-jpl/src/android/ISSM/jni/issmlib/libISSMCore.a (added) Added libISSMCore.a Wed, 07 Nov 2012 22:43:45 GMT Mathieu Morlighem [13895] * issm/trunk-jpl/src/c/toolkits/petsc/patches/NewMat.cpp (modified) CHG: testing change for petsc-dev (const MatType) Wed, 07 Nov 2012 21:47:20 GMT Mathieu Morlighem [13894] * issm/trunk-jpl/src/c/classes/FemModel.cpp (modified) CHG: still working on matric preallocation, nothing new at this ... Wed, 07 Nov 2012 19:25:41 GMT Mathieu Morlighem [13893] * issm/trunk-jpl/src/c/toolkits/petsc/objects/PetscMat.cpp (modified) NEW: added MAT_NEW_NONZERO_ALLOCATION_ERR as an option for ... Wed, 07 Nov 2012 19:24:57 GMT Mathieu Morlighem [13892] * issm/trunk-jpl/src/c/classes/objects/Elements/Element.h (modified) * issm/trunk-jpl/src/c/classes/objects/Elements/Penta.cpp (modified) * issm/trunk-jpl/src/c/classes/objects/Elements/Penta.h (modified) * issm/trunk-jpl/src/c/classes/objects/Elements/Tria.cpp (modified) * issm/trunk-jpl/src/c/classes/objects/Elements/Tria.h (modified) NEW: added GetNodesSidList Wed, 07 Nov 2012 06:20:16 GMT Eric.Larour [13891] * issm/trunk-jpl/src/android/ISSM/bin (modified) * issm/trunk-jpl/src/android/ISSM/bin/AndroidManifest.xml (added) * issm/trunk-jpl/src/android/ISSM/libs (modified) CHG: get svn to ignore some files Wed, 07 Nov 2012 06:17:20 GMT Eric.Larour [13890] * issm/trunk-jpl/src/android/ISSM (added) * issm/trunk-jpl/src/android/ISSM/.classpath (added) * issm/trunk-jpl/src/android/ISSM/.project (added) * issm/trunk-jpl/src/android/ISSM/AndroidManifest.xml (added) * issm/trunk-jpl/src/android/ISSM/assets (added) * issm/trunk-jpl/src/android/ISSM/bin (added) * issm/trunk-jpl/src/android/ISSM/gen (added) * issm/trunk-jpl/src/android/ISSM/gen/com (added) * issm/trunk-jpl/src/android/ISSM/gen/com/example (added) * issm/trunk-jpl/src/android/ISSM/gen/com/example/issm (added) * issm/trunk-jpl/src/android/ISSM/gen/com/example/issm/BuildConfig.java (added) * issm/trunk-jpl/src/android/ISSM/gen/com/example/issm/R.java (added) * issm/trunk-jpl/src/android/ISSM/ic_launcher-web.png (added) * issm/trunk-jpl/src/android/ISSM/jni (added) * issm/trunk-jpl/src/android/ISSM/jni/Android.mk (added) * issm/trunk-jpl/src/android/ISSM/jni/Main.cpp (added) * issm/trunk-jpl/src/android/ISSM/jni/com_example_issm_FacLib.h (added) * issm/trunk-jpl/src/android/ISSM/jni/issmlib (added) * issm/trunk-jpl/src/android/ISSM/jni/issmlib/Android.mk (added) * issm/trunk-jpl/src/android/ISSM/jni/issmlib/include (added) * issm/trunk-jpl/src/android/ISSM/jni/issmlib/include/fac.h (added) * issm/trunk-jpl/src/android/ISSM/libs (added) * issm/trunk-jpl/src/android/ISSM/obj (added) * issm/trunk-jpl/src/android/ISSM/obj/local (added) * issm/trunk-jpl/src/android/ISSM/obj/local/armeabi (added) * issm/trunk-jpl/src/android/ISSM/obj/local/armeabi/objs (added) * issm/trunk-jpl/src/android/ISSM/obj/local/armeabi/objs/FacLib (added) * issm/trunk-jpl/src/android/ISSM/obj/local/armeabi/objs/FacLib/Main.o.d (added) * issm/trunk-jpl/src/android/ISSM/proguard-project.txt (added) * issm/trunk-jpl/src/android/ISSM/project.properties (added) * issm/trunk-jpl/src/android/ISSM/res (added) * issm/trunk-jpl/src/android/ISSM/res/drawable-hdpi (added) * issm/trunk-jpl/src/android/ISSM/res/drawable-hdpi/ic_action_search.png (added) * issm/trunk-jpl/src/android/ISSM/res/drawable-hdpi/ic_launcher.png (added) * issm/trunk-jpl/src/android/ISSM/res/drawable-ldpi (added) * issm/trunk-jpl/src/android/ISSM/res/drawable-ldpi/ic_launcher.png (added) * issm/trunk-jpl/src/android/ISSM/res/drawable-mdpi (added) * issm/trunk-jpl/src/android/ISSM/res/drawable-mdpi/ic_action_search.png (added) * issm/trunk-jpl/src/android/ISSM/res/drawable-mdpi/ic_launcher.png (added) * issm/trunk-jpl/src/android/ISSM/res/drawable-xhdpi (added) * issm/trunk-jpl/src/android/ISSM/res/drawable-xhdpi/ic_action_search.png (added) * issm/trunk-jpl/src/android/ISSM/res/drawable-xhdpi/ic_launcher.png (added) * issm/trunk-jpl/src/android/ISSM/res/layout (added) * issm/trunk-jpl/src/android/ISSM/res/layout/activity_issm.xml (added) * issm/trunk-jpl/src/android/ISSM/res/menu (added) * issm/trunk-jpl/src/android/ISSM/res/menu/activity_issm.xml (added) * issm/trunk-jpl/src/android/ISSM/res/values (added) * issm/trunk-jpl/src/android/ISSM/res/values-large (added) * issm/trunk-jpl/src/android/ISSM/res/values-large/dimens.xml (added) * issm/trunk-jpl/src/android/ISSM/res/values-v11 (added) * issm/trunk-jpl/src/android/ISSM/res/values-v11/styles.xml (added) * issm/trunk-jpl/src/android/ISSM/res/values-v14 (added) * issm/trunk-jpl/src/android/ISSM/res/values-v14/styles.xml (added) * issm/trunk-jpl/src/android/ISSM/res/values/dimens.xml (added) * issm/trunk-jpl/src/android/ISSM/res/values/strings.xml (added) * issm/trunk-jpl/src/android/ISSM/res/values/styles.xml (added) * issm/trunk-jpl/src/android/ISSM/src (added) * issm/trunk-jpl/src/android/ISSM/src/com (added) * issm/trunk-jpl/src/android/ISSM/src/com/example (added) * issm/trunk-jpl/src/android/ISSM/src/com/example/issm (added) * issm/trunk-jpl/src/android/ISSM/src/com/example/issm/FacLib.java (added) * issm/trunk-jpl/src/android/ISSM/src/com/example/issm/ISSM.java (added) NEW: ISSM project that links against libISSMCore.a library Wed, 07 Nov 2012 00:39:48 GMT Mathieu Morlighem [13889] * issm/trunk-jpl/src/c/classes/FemModel.cpp (modified) CHG: improved some aspects of stiffness matrix allocation (get number ... Wed, 07 Nov 2012 00:26:26 GMT Eric.Larour [13888] * issm/trunk-jpl/src/c/classes/FemModel.cpp (modified) CHG: protect with HAVE_MPI Tue, 06 Nov 2012 23:40:16 GMT Mathieu Morlighem [13887] * issm/trunk-jpl/src/c/Container/Elements.cpp (modified) * issm/trunk-jpl/src/c/Container/Elements.h (modified) NEW: added GetMaxNodes Tue, 06 Nov 2012 23:40:08 GMT Mathieu Morlighem [13886] * issm/trunk-jpl/src/c/classes/objects/Elements/Element.h (modified) * issm/trunk-jpl/src/c/classes/objects/Elements/Penta.cpp (modified) * issm/trunk-jpl/src/c/classes/objects/Elements/Penta.h (modified) * issm/trunk-jpl/src/c/classes/objects/Elements/Tria.cpp (modified) * issm/trunk-jpl/src/c/classes/objects/Elements/Tria.h (modified) NEW: added GetMaxNodes Tue, 06 Nov 2012 23:09:54 GMT Eric.Larour [13885] * issm/trunk-jpl/etc/environment.sh (modified) CHG: different location for arm toolsuite Tue, 06 Nov 2012 23:09:39 GMT Eric.Larour [13884] * issm/trunk-jpl/externalpackages/android/android-ndk/install.sh (modified) CHG: different location for arm toolsuite Tue, 06 Nov 2012 22:53:16 GMT Eric.Larour [13883] * issm/trunk-jpl/etc/environment.sh (modified) CHG: new location for arm toolchain Tue, 06 Nov 2012 22:47:00 GMT Eric.Larour [13882] * issm/trunk-jpl/src/android/issm-android-inputfiles/test102.bin (modified) * issm/trunk-jpl/src/android/issm-android-inputfiles/test102.petsc (modified) CHG: updated input files Tue, 06 Nov 2012 19:37:35 GMT Mathieu Morlighem [13881] * issm/trunk-jpl/src/c/classes/FemModel.cpp (modified) * issm/trunk-jpl/src/c/classes/FemModel.h (modified) NEW: finishing up stiffness matrix allocation algorithm Mon, 05 Nov 2012 23:35:08 GMT Mathieu Morlighem [13880] * issm/trunk-jpl/src/c/classes/matrix/Matrix.h (modified) * issm/trunk-jpl/src/c/classes/matrix/Vector.h (modified) * issm/trunk-jpl/src/c/toolkits/issm/SeqMat.h (modified) * issm/trunk-jpl/src/c/toolkits/issm/SeqVec.h (modified) * issm/trunk-jpl/src/c/toolkits/petsc/objects/PetscMat.cpp (modified) * issm/trunk-jpl/src/c/toolkits/petsc/objects/PetscMat.h (modified) * issm/trunk-jpl/src/c/toolkits/petsc/objects/PetscVec.cpp (modified) * issm/trunk-jpl/src/c/toolkits/petsc/objects/PetscVec.h (modified) NEW: added new constructors for matrix and vector, with local and ... Mon, 05 Nov 2012 23:19:17 GMT Mathieu Morlighem [13879] * issm/trunk-jpl/test/Archives/Archive237.nc (modified) * issm/trunk-jpl/test/NightlyRun/test108.m (modified) * issm/trunk-jpl/test/NightlyRun/test108.py (modified) * issm/trunk-jpl/test/NightlyRun/test202.py (modified) * issm/trunk-jpl/test/NightlyRun/test203.py (modified) * issm/trunk-jpl/test/NightlyRun/test204.py (modified) * issm/trunk-jpl/test/NightlyRun/test205.py (modified) * issm/trunk-jpl/test/NightlyRun/test206.py (modified) * issm/trunk-jpl/test/NightlyRun/test207.m (modified) * issm/trunk-jpl/test/NightlyRun/test207.py (modified) * issm/trunk-jpl/test/NightlyRun/test208.py (modified) * issm/trunk-jpl/test/NightlyRun/test209.py (modified) * issm/trunk-jpl/test/NightlyRun/test210.py (modified) * issm/trunk-jpl/test/NightlyRun/test211.py (modified) * issm/trunk-jpl/test/NightlyRun/test212.py (modified) * issm/trunk-jpl/test/NightlyRun/test213.py (modified) * issm/trunk-jpl/test/NightlyRun/test214.py (modified) * issm/trunk-jpl/test/NightlyRun/test215.py (modified) * issm/trunk-jpl/test/NightlyRun/test216.py (modified) * issm/trunk-jpl/test/NightlyRun/test217.py (modified) * issm/trunk-jpl/test/NightlyRun/test219.py (modified) * issm/trunk-jpl/test/NightlyRun/test220.py (modified) * issm/trunk-jpl/test/NightlyRun/test232.m (modified) * issm/trunk-jpl/test/NightlyRun/test232.py (modified) * issm/trunk-jpl/test/NightlyRun/test3001.py (modified) * issm/trunk-jpl/test/NightlyRun/test3002.py (modified) * issm/trunk-jpl/test/NightlyRun/test3003.py (modified) * issm/trunk-jpl/test/NightlyRun/test3004.py (modified) * issm/trunk-jpl/test/NightlyRun/test3005.py (modified) * issm/trunk-jpl/test/NightlyRun/test3006.py (modified) * issm/trunk-jpl/test/NightlyRun/test3007.py (modified) * issm/trunk-jpl/test/NightlyRun/test3008.py (modified) * issm/trunk-jpl/test/NightlyRun/test3009.py (modified) * issm/trunk-jpl/test/NightlyRun/test3010.py (modified) * issm/trunk-jpl/test/NightlyRun/test318.m (modified) * issm/trunk-jpl/test/NightlyRun/test318.py (modified) * issm/trunk-jpl/test/NightlyRun/test406.m (modified) * issm/trunk-jpl/test/NightlyRun/test406.py (modified) * issm/trunk-jpl/test/NightlyRun/test415.m (modified) * issm/trunk-jpl/test/NightlyRun/test415.py (modified) * issm/trunk-jpl/test/NightlyRun/test426.m (modified) * issm/trunk-jpl/test/NightlyRun/test426.py (modified) CHG: relaxed some tolerances, updated test237 archive and removed all ... Mon, 05 Nov 2012 22:30:01 GMT Mathieu Morlighem [13878] * issm/trunk-jpl/src/c/classes/FemModel.cpp (modified) * issm/trunk-jpl/src/c/classes/FemModel.h (modified) NEW: added allocation module, to be continued Mon, 05 Nov 2012 21:56:10 GMT Mathieu Morlighem [13877] * issm/trunk-jpl/src/c/Makefile.am (modified) * issm/trunk-jpl/src/c/classes/FemModel.cpp (modified) * issm/trunk-jpl/src/c/classes/FemModel.h (modified) * issm/trunk-jpl/src/c/modules/SystemMatricesx (deleted) * issm/trunk-jpl/src/c/modules/modules.h (modified) * issm/trunk-jpl/src/c/solvers/solver_adjoint_linear.cpp (modified) * issm/trunk-jpl/src/c/solvers/solver_linear.cpp (modified) * issm/trunk-jpl/src/c/solvers/solver_newton.cpp (modified) * issm/trunk-jpl/src/c/solvers/solver_nonlinear.cpp (modified) * issm/trunk-jpl/src/c/solvers/solver_stokescoupling_nonlinear.cpp (modified) * issm/trunk-jpl/src/c/solvers/solver_thermal_nonlinear.cpp (modified) CHG: moved SystemMatrices to FemModel.cpp (for solver_nonlinear, ... Mon, 05 Nov 2012 21:31:12 GMT Mathieu Morlighem [13876] * issm/trunk-jpl/src/c/modules/SmearFunctionx (deleted) DEL: not needed (not even implemented) Mon, 05 Nov 2012 21:26:35 GMT Mathieu Morlighem [13875] * issm/trunk-jpl/src/c/Makefile.am (modified) * issm/trunk-jpl/src/c/classes/FemModel.cpp (modified) * issm/trunk-jpl/src/c/classes/FemModel.h (modified) * issm/trunk-jpl/src/c/modules/ElementResponsex (deleted) * issm/trunk-jpl/src/c/modules/IceVolumex (deleted) * issm/trunk-jpl/src/c/modules/TotalSmbx (deleted) * issm/trunk-jpl/src/c/modules/modules.h (modified) CHG: moved some modules to FemModel.cpp Mon, 05 Nov 2012 21:00:00 GMT Mathieu Morlighem [13874] * issm/trunk-jpl/src/c/Makefile.am (modified) * issm/trunk-jpl/src/c/classes/FemModel.cpp (modified) * issm/trunk-jpl/src/c/classes/FemModel.h (modified) * issm/trunk-jpl/src/c/modules/MinVelx (deleted) * issm/trunk-jpl/src/c/modules/MinVxx (deleted) * issm/trunk-jpl/src/c/modules/MinVyx (deleted) * issm/trunk-jpl/src/c/modules/MinVzx (deleted) * issm/trunk-jpl/src/c/modules/modules.h (modified) CHG: moved some modules to FemModel.cpp Mon, 05 Nov 2012 18:49:18 GMT Eric.Larour [13873] * issm/trunk-jpl/etc/environment.sh (modified) CHG: if MPI is not there, environment.sh was not catching it. Fixed it. Sun, 04 Nov 2012 23:40:24 GMT Eric.Larour [13872] * issm/trunk-jpl/externalpackages/gsl (modified) * issm/trunk-jpl/externalpackages/gsl/install-android.sh (modified) CHG: fixing some bugs. Sun, 04 Nov 2012 23:03:58 GMT Eric.Larour [13871] * issm/trunk-jpl/externalpackages/export_fig (modified) CHG: getting svn to ignore some files. Sun, 04 Nov 2012 23:03:26 GMT Eric.Larour [13870] * issm/trunk-jpl/src/m/plot/curvedarrow.m (modified) * issm/trunk-jpl/src/m/plot/plot_riftrelvel.m (modified) CHG: slight mods to these two routines Fri, 02 Nov 2012 21:42:38 GMT Mathieu Morlighem [13869] * issm/trunk-jpl/src/c/classes/matrix/Matrix.h (modified) * issm/trunk-jpl/src/c/toolkits/petsc/objects/PetscMat.cpp (modified) * issm/trunk-jpl/src/c/toolkits/petsc/objects/PetscMat.h (modified) NEW: added AllocationInfo method for matrices Fri, 02 Nov 2012 18:08:45 GMT Mathieu Morlighem [13868] * issm/trunk-jpl/src/c/toolkits/petsc/objects/PetscMat.cpp (modified) CHG: no need to use MatCompress (never implemented: ... Thu, 01 Nov 2012 18:44:02 GMT jschierm [13867] * issm/trunk-jpl/src/m/solve/WriteData.py (modified) CHG: Changed checks in WriteData.py to allow lists and tuples. Thu, 01 Nov 2012 18:26:22 GMT jschierm [13866] * issm/trunk-jpl/src/m/classes/verbose.py (modified) NEW: Updated python verbose to [13435]. Thu, 01 Nov 2012 18:08:31 GMT jschierm [13865] * issm/trunk-jpl/src/m/classes/autodiff.py (modified) * issm/trunk-jpl/src/m/classes/dependent.py (modified) * issm/trunk-jpl/src/m/classes/independent.py (modified) CHG: Enabling MeshProfileIntersection and more small changes. Thu, 01 Nov 2012 18:04:25 GMT jschierm [13864] * issm/trunk-jpl/src/wrappers/MeshProfileIntersection/MeshProfileIntersection.cpp (modified) * issm/trunk-jpl/src/wrappers/python/Makefile.am (modified) CHG: Removed mexCallMATLAB and associated Matlab dependencies from ... Wed, 31 Oct 2012 22:57:53 GMT jschierm [13863] * issm/trunk-jpl/src/m/classes/autodiff.m (modified) * issm/trunk-jpl/src/m/classes/autodiff.py (modified) * issm/trunk-jpl/src/m/classes/dependent.py (modified) * issm/trunk-jpl/src/m/classes/independent.py (modified) FIX: Various small things. Wed, 31 Oct 2012 22:42:39 GMT jschierm [13862] * issm/trunk-jpl/src/m/classes/autodiff.m (modified) * issm/trunk-jpl/src/m/classes/autodiff.py (modified) * issm/trunk-jpl/src/m/classes/dependent.m (modified) * issm/trunk-jpl/src/m/classes/dependent.py (added) * issm/trunk-jpl/src/m/classes/independent.m (modified) * issm/trunk-jpl/src/m/classes/independent.py (added) NEW: Updated python autodiff to matlab version and added python ... Wed, 31 Oct 2012 18:21:00 GMT Mathieu Morlighem [13861] * issm/trunk-jpl/externalpackages/esmf/doc (deleted) * issm/trunk-jpl/externalpackages/esmf/install.sh (modified) DEL: documentation is now downloaded at installation Wed, 31 Oct 2012 17:38:04 GMT Mathieu Morlighem [13860] * issm/trunk-jpl/src/c/classes/objects/Elements/Element.h (modified) * issm/trunk-jpl/src/c/classes/objects/Elements/Penta.h (modified) * issm/trunk-jpl/src/c/classes/objects/Elements/Tria.cpp (modified) * issm/trunk-jpl/src/c/classes/objects/Elements/Tria.h (modified) NEW: added SetwiseConnectivity for stiffness matrix preallocation Wed, 31 Oct 2012 16:45:56 GMT jschierm [13859] * issm/trunk-jpl/scripts/BinRead.py (moved) CHG: Didn't know about scripts directory. Tue, 30 Oct 2012 22:08:24 GMT jschierm [13858] * issm/trunk-jpl/test/NightlyRun/python_skipped_tests.txt (modified) * issm/trunk-jpl/test/NightlyRun/python_test_guidelines.txt (modified) * issm/trunk-jpl/test/NightlyRun/test511.m (modified) * issm/trunk-jpl/test/NightlyRun/test511.py (added) * issm/trunk-jpl/test/NightlyRun/test613.m (modified) * issm/trunk-jpl/test/NightlyRun/test613.py (added) NEW: Working python test511 and test613. Tue, 30 Oct 2012 22:03:19 GMT jschierm [13857] * issm/trunk-jpl/src/m/boundaryconditions/SetMarineIceSheetBC.py (modified) * issm/trunk-jpl/src/m/classes/model/model.m (modified) * issm/trunk-jpl/src/m/classes/model/model.py (modified) * issm/trunk-jpl/src/m/classes/verbose.py (modified) * issm/trunk-jpl/src/m/mesh/bamg.py (modified) * issm/trunk-jpl/src/m/parameterization/contourenvelope.m (modified) * issm/trunk-jpl/src/m/parameterization/contourenvelope.py (added) NEW: Added python model.extract and contourenvelope (plus matlab ... Tue, 30 Oct 2012 22:00:07 GMT jschierm [13856] * issm/trunk-jpl/src/m/classes/inversion.py (modified) CHG: Change Python control_parameter marshaling from column vector to ... Tue, 30 Oct 2012 21:08:46 GMT Mathieu Morlighem [13855] * issm/trunk-jpl/src/c/Makefile.am (modified) * issm/trunk-jpl/src/c/classes/FemModel.cpp (modified) * issm/trunk-jpl/src/c/solutions/AdjointCorePointerFromSolutionEnum.cpp (modified) * issm/trunk-jpl/src/c/solutions/CorePointerFromSolutionEnum.cpp (modified) * issm/trunk-jpl/src/c/solutions/DakotaSpawnCore.cpp (modified) * issm/trunk-jpl/src/c/solutions/WrapperCorePointerFromSolutionEnum.cpp (moved) * issm/trunk-jpl/src/c/solutions/control_core.cpp (modified) * issm/trunk-jpl/src/c/solutions/controltao_core.cpp (modified) * issm/trunk-jpl/src/c/solutions/solutions.h (modified) CHG: renamed PureCorePointer->CorePointer and ... Tue, 30 Oct 2012 21:04:56 GMT schlegel [13854] * issm/trunk-jpl/etc/environment.csh (modified) CHG: need cmake to prepend PATH Tue, 30 Oct 2012 21:01:23 GMT Mathieu Morlighem [13853] * issm/trunk-jpl/configs/config-linux64-astrid-python.sh (deleted) * issm/trunk-jpl/configs/config-linux64-astrid.sh (modified) * issm/trunk-jpl/configs/config-macosx-snowleopard-bothapis.sh (modified) * issm/trunk-jpl/configs/config-macosx-snowleopard-python.sh (modified) * issm/trunk-jpl/configs/config-macosx64-chris-bothapis.sh (modified) * issm/trunk-jpl/configs/config-macosx64-chris-python.sh (modified) * issm/trunk-jpl/configs/config-macosx64-larour-nopetsc.sh (modified) * issm/trunk-jpl/configs/config-macosx64-larour-python.sh (modified) * issm/trunk-jpl/configs/config-macosx64-lion-helene.sh (modified) CHG: python-version not needed anymore Tue, 30 Oct 2012 20:48:26 GMT Mathieu Morlighem [13852] * issm/trunk-jpl/src/c/solutions/controltao_core.cpp (modified) BUG: fixed tao, now optimazing actual core Tue, 30 Oct 2012 20:32:06 GMT Mathieu Morlighem [13851] * issm/trunk-jpl/externalpackages/gdal/install-linux64-astrid.sh (moved) * issm/trunk-jpl/externalpackages/gdal/install-linux64-murdo.sh (moved) * issm/trunk-jpl/externalpackages/gdal/install-macosx64.sh (moved) * issm/trunk-jpl/externalpackages/gdal/install.sh (deleted) CHG: renamed installation scripts Tue, 30 Oct 2012 20:24:22 GMT schlegel [13850] * issm/trunk-jpl/externalpackages/gdal/install_astrid.sh (modified) CHG: name patch file with astrid Tue, 30 Oct 2012 20:23:15 GMT schlegel [13849] * issm/trunk-jpl/externalpackages/gdal/GDALmake.opt.patch.astrid (added) * issm/trunk-jpl/externalpackages/gdal/install_astrid.sh (added) NEW: add specific scripts for astrid Tue, 30 Oct 2012 19:20:37 GMT schlegel [13848] * issm/trunk-jpl/externalpackages/gdal/install_macosx.sh (added) NEW:GDAL for Mac Tue, 30 Oct 2012 19:19:37 GMT schlegel [13847] * issm/trunk-jpl/etc/environment.sh (modified) BUG:Fix prepath and GDAL include Mon, 29 Oct 2012 22:28:54 GMT Eric.Larour [13846] * issm/trunk-jpl/configs/config-macosx64-larour.sh (modified) CHG: not needed anymore