# # ChangeLog for / # # Generated by Trac 1.4.3 # 05/16/25 06:26:48 Thu, 25 Oct 2012 19:22:22 GMT Mathieu Morlighem [13831] * issm/trunk-jpl/src/c/Makefile.am (modified) * issm/trunk-jpl/src/c/shared/Wrapper (deleted) * issm/trunk-jpl/src/c/shared/shared.h (modified) * issm/trunk-jpl/src/m/os/issmscpin.m (modified) * issm/trunk-jpl/src/m/os/issmscpout.m (modified) * issm/trunk-jpl/src/wrappers/matlab/Makefile.am (modified) * issm/trunk-jpl/src/wrappers/python/Makefile.am (modified) CHG: renamed libISSMWrappers libISSMModules Thu, 25 Oct 2012 19:04:51 GMT Mathieu Morlighem [13830] * issm/trunk-jpl/src/c/shared/Numerics/isnan.cpp (modified) * issm/trunk-jpl/src/c/shared/Numerics/isnan.h (modified) CHG: no double blank space please Thu, 25 Oct 2012 18:32:25 GMT Eric.Larour [13829] * issm/trunk-jpl/src/c/Makefile.am (modified) * issm/trunk-jpl/src/c/shared/Numerics/isnan.cpp (added) * issm/trunk-jpl/src/c/shared/Numerics/isnan.h (modified) CHG: avoid double definition of isnan in AD mode compilation. Thu, 25 Oct 2012 18:22:04 GMT Eric.Larour [13828] * issm/trunk-jpl/src/m/plot/plot_riftrelvel.m (modified) CHG: added more optoins to control legend Thu, 25 Oct 2012 13:49:37 GMT jschierm [13827] * issm/trunk-jpl/src/m/os/issmssh.py (modified) CHG: Added comments for bug fix [13826]. Wed, 24 Oct 2012 22:58:07 GMT jschierm [13826] * issm/trunk-jpl/src/m/os/issmssh.py (modified) FIX: Reset i/o streams to avoid ugly crashes on Mac. Wed, 24 Oct 2012 20:26:53 GMT Mathieu Morlighem [13825] * issm/trunk-jpl/src/m/classes/clusters/generic.m (modified) CHG: added display etcpath Wed, 24 Oct 2012 19:57:18 GMT Mathieu Morlighem [13824] * issm/trunk-jpl/externalpackages/mpich2/install-1.5-walgreen.sh (added) NEW: added installation script for walgreen Wed, 24 Oct 2012 18:54:21 GMT Mathieu Morlighem [13823] * issm/trunk-jpl/externalpackages/git/install.sh (modified) CHG: removed python for now Wed, 24 Oct 2012 15:48:52 GMT Mathieu Morlighem [13822] * issm/trunk-jpl/configs/config-macosx64-mlion-mathieu.sh (added) NEW: added issm configuration for moutain lion Wed, 24 Oct 2012 15:47:27 GMT Mathieu Morlighem [13821] * issm/trunk-jpl/externalpackages/scipy/install-macosx-mlion.sh (added) NEW: added installation script for Mountain Lion Wed, 24 Oct 2012 15:46:24 GMT Mathieu Morlighem [13820] * issm/trunk-jpl/externalpackages/numpy/install-macosx-mlion.sh (added) NEW: added installation script for Mountain Lion Wed, 24 Oct 2012 15:44:53 GMT Mathieu Morlighem [13819] * issm/trunk-jpl/externalpackages/python/install-2.7.3-macosx-mlion.sh (added) NEW: added installation script for Mountain Lion Wed, 24 Oct 2012 15:40:11 GMT Mathieu Morlighem [13818] * issm/trunk-jpl/externalpackages/petsc/install-3.3-walgreen.sh (added) NEW: added installation script for walgreen (arch=ia64) Wed, 24 Oct 2012 04:19:34 GMT Eric.Larour [13817] * issm/trunk-jpl/src/m/classes/clusters/generic.m (modified) CHG: generic assumed etc path was given though issmdir, but in the ... Tue, 23 Oct 2012 22:34:14 GMT Mathieu Morlighem [13816] * issm/trunk-jpl/src/c/include/macros.h (modified) CHR: return 0 even if an error exception is thrown this will avoid ... Tue, 23 Oct 2012 20:55:17 GMT Mathieu Morlighem [13815] * issm/trunk-jpl/src/c/solutions/issm.cpp (modified) CHG: reverted back Tue, 23 Oct 2012 20:55:02 GMT Mathieu Morlighem [13814] * issm/trunk-jpl/src/c/modules/Solverx/SolverxPetsc.cpp (modified) CHG: reverted back Tue, 23 Oct 2012 20:52:13 GMT Mathieu Morlighem [13813] * issm/trunk-jpl/src/c/Container/Elements.cpp (modified) * issm/trunk-jpl/src/c/Container/Inputs.cpp (modified) * issm/trunk-jpl/src/c/Container/Nodes.cpp (modified) * issm/trunk-jpl/src/c/classes/FemModel.cpp (modified) * issm/trunk-jpl/src/c/classes/objects/Elements/Penta.cpp (modified) * issm/trunk-jpl/src/c/classes/objects/Elements/Tria.cpp (modified) * issm/trunk-jpl/src/c/classes/objects/Inputs/ControlInput.cpp (modified) * issm/trunk-jpl/src/c/classes/objects/Inputs/DatasetInput.cpp (modified) * issm/trunk-jpl/src/c/classes/objects/Loads/Icefront.cpp (modified) * issm/trunk-jpl/src/c/modules/ContourToNodesx/ContourToNodesx.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/Dakota/CreateParametersDakota.cpp (modified) * issm/trunk-jpl/src/c/modules/Solverx/SolverxPetsc.cpp (modified) * issm/trunk-jpl/src/c/modules/Solverx/SolverxSeq.cpp (modified) * issm/trunk-jpl/src/c/shared/Exp/exp.h (modified) * issm/trunk-jpl/src/c/solutions/DakotaSpawnCore.cpp (modified) * issm/trunk-jpl/src/c/solutions/issm.cpp (modified) CHG: more cppcheck issues Tue, 23 Oct 2012 20:39:57 GMT Mathieu Morlighem [13812] * issm/trunk-jpl/src/m/plot/plot_highlightvertices.m (modified) * issm/trunk-jpl/src/m/plot/plot_vertexnumbering.m (modified) BUG: no need to have highlight as a line Tue, 23 Oct 2012 20:33:59 GMT Mathieu Morlighem [13811] * issm/trunk-jpl/src/m/classes/diagnostic.m (modified) CHG: more tolerant check on spc Tue, 23 Oct 2012 19:07:07 GMT Eric.Larour [13810] * issm/trunk-jpl/execution (modified) CHG: get svn to ignore test decks Tue, 23 Oct 2012 18:49:56 GMT jschierm [13809] * issm/trunk-jpl/test/Archives/Archive423.nc (modified) * issm/trunk-jpl/test/NightlyRun/python_skipped_tests.txt (modified) * issm/trunk-jpl/test/NightlyRun/test423.m (modified) * issm/trunk-jpl/test/NightlyRun/test423.py (added) * issm/trunk-jpl/test/Par/RoundSheetShelf.par (modified) * issm/trunk-jpl/test/Par/RoundSheetShelf.py (added) NEW: Working test423.py and RoundSheetShelf.py (plus archive and ... Tue, 23 Oct 2012 18:44:54 GMT jschierm [13808] * issm/trunk-jpl/src/m/mesh/roundmesh.m (modified) * issm/trunk-jpl/src/m/mesh/roundmesh.py (modified) NEW: Python and Matlab versions of roundmesh with rounding for exp files. Tue, 23 Oct 2012 17:05:13 GMT Mathieu Morlighem [13807] * issm/trunk-jpl/externalpackages/openssl (added) * issm/trunk-jpl/externalpackages/openssl/install.sh (added) NEW: added openssl package needed to solve python hashlib issue with mpd5 Tue, 23 Oct 2012 01:54:30 GMT Eric.Larour [13806] * issm/trunk-jpl/src/m/contrib/hack/tres.m (modified) * issm/trunk-jpl/src/m/mesh/rifts/meshprocessoutsiderifts.m (modified) * issm/trunk-jpl/src/m/mesh/rifts/rifttipsonmesh.m (modified) CHG: update of rifting capabilities Tue, 23 Oct 2012 01:28:07 GMT seroussi [13805] * issm/trunk-jpl/src/c/solutions/controltao_core.cpp (modified) BUG: fixed problem with femmodel Mon, 22 Oct 2012 23:55:29 GMT habbalf [13804] * issm/trunk-jpl/configs/config-pleiades-petscdev.sh (modified) CHG: removed plapack and prometheus Mon, 22 Oct 2012 23:05:58 GMT Mathieu Morlighem [13803] * issm/trunk-jpl/src/c/modules/ModelProcessorx/DiagnosticHoriz/CreateLoadsDiagnosticHoriz.cpp (modified) BUG: fixed memory leak for rifts Mon, 22 Oct 2012 22:45:47 GMT cborstad [13802] * issm/trunk-jpl/startup.py (modified) CHG: startup.py now only appends the search path so that python ... Mon, 22 Oct 2012 22:24:06 GMT Mathieu Morlighem [13801] * issm/trunk-jpl/src/c/classes/matrix/Matrix.h (modified) * issm/trunk-jpl/src/c/classes/matrix/Vector.h (modified) CHG: never throw exceptions in destructors as this might trigger ... Mon, 22 Oct 2012 22:20:34 GMT Mathieu Morlighem [13800] * issm/trunk-jpl/src/c/classes/bamg/Mesh.cpp (modified) * issm/trunk-jpl/src/c/shared/Exceptions/Exceptions.cpp (modified) CHG: safer way to call str().c_str() (see cppcheck ... Mon, 22 Oct 2012 22:10:05 GMT Mathieu Morlighem [13799] * issm/trunk-jpl/src/c/solutions/DakotaSpawnCore.cpp (modified) CHG: cannot dynamic_cast void* to FemModel*, use reinterpret_cast instead Mon, 22 Oct 2012 22:00:16 GMT Mathieu Morlighem [13798] * issm/trunk-jpl/src/c/Container/DataSet.cpp (modified) * issm/trunk-jpl/src/c/Container/Inputs.cpp (modified) * issm/trunk-jpl/src/c/Container/Nodes.cpp (modified) * issm/trunk-jpl/src/c/classes/FemModel.cpp (modified) * issm/trunk-jpl/src/c/classes/Hook.cpp (modified) * issm/trunk-jpl/src/c/classes/IoModel.cpp (modified) * issm/trunk-jpl/src/c/classes/bamg/Geometry.cpp (modified) * issm/trunk-jpl/src/c/modules/AverageOntoPartitionx/AverageOntoPartitionx.cpp (modified) * issm/trunk-jpl/src/c/modules/ComputeBasalStressx/ComputeBasalStressx.cpp (modified) * issm/trunk-jpl/src/c/modules/ComputeStrainRatex/ComputeStrainRatex.cpp (modified) * issm/trunk-jpl/src/c/modules/ConfigureObjectsx/ConfigureObjectsx.cpp (modified) * issm/trunk-jpl/src/c/modules/CreateJacobianMatrixx/CreateJacobianMatrixx.cpp (modified) * issm/trunk-jpl/src/c/modules/Delta18oParameterizationx/Delta18oParameterizationx.cpp (modified) * issm/trunk-jpl/src/c/modules/DragCoefficientAbsGradientx/DragCoefficientAbsGradientx.cpp (modified) * issm/trunk-jpl/src/c/modules/ElementResponsex/ElementResponsex.cpp (modified) * issm/trunk-jpl/src/c/modules/GetSolutionFromInputsx/GetSolutionFromInputsx.cpp (modified) * issm/trunk-jpl/src/c/modules/GetVectorFromInputsx/GetVectorFromInputsx.cpp (modified) * issm/trunk-jpl/src/c/modules/GroundinglineMigrationx/GroundinglineMigrationx.cpp (modified) * issm/trunk-jpl/src/c/modules/IceVolumex/IceVolumex.cpp (modified) * issm/trunk-jpl/src/c/modules/InputArtificialNoisex/InputArtificialNoisex.cpp (modified) * issm/trunk-jpl/src/c/modules/InputControlUpdatex/InputControlUpdatex.cpp (modified) * issm/trunk-jpl/src/c/modules/InputConvergencex/InputConvergencex.cpp (modified) * issm/trunk-jpl/src/c/modules/InputDuplicatex/InputDuplicatex.cpp (modified) * issm/trunk-jpl/src/c/modules/InputScalex/InputScalex.cpp (modified) * issm/trunk-jpl/src/c/modules/InputToResultx/InputToResultx.cpp (modified) * issm/trunk-jpl/src/c/modules/InputUpdateFromConstantx/InputUpdateFromConstantx.cpp (modified) * issm/trunk-jpl/src/c/modules/InputUpdateFromMatrixDakotax/InputUpdateFromMatrixDakotax.cpp (modified) * issm/trunk-jpl/src/c/modules/InputUpdateFromSolutionx/InputUpdateFromSolutionx.cpp (modified) * issm/trunk-jpl/src/c/modules/InputUpdateFromVectorDakotax/InputUpdateFromVectorDakotax.cpp (modified) * issm/trunk-jpl/src/c/modules/InputUpdateFromVectorx/InputUpdateFromVectorx.cpp (modified) * issm/trunk-jpl/src/c/modules/MinVelx/MinVelx.cpp (modified) * issm/trunk-jpl/src/c/modules/MinVxx/MinVxx.cpp (modified) * issm/trunk-jpl/src/c/modules/MinVyx/MinVyx.cpp (modified) * issm/trunk-jpl/src/c/modules/MinVzx/MinVzx.cpp (modified) * issm/trunk-jpl/src/c/modules/NodalValuex/NodalValuex.cpp (modified) * issm/trunk-jpl/src/c/modules/PositiveDegreeDayx/PositiveDegreeDayx.cpp (modified) * issm/trunk-jpl/src/c/modules/ResetCoordinateSystemx/ResetCoordinateSystemx.cpp (modified) * issm/trunk-jpl/src/c/modules/RheologyBbarAbsGradientx/RheologyBbarAbsGradientx.cpp (modified) * issm/trunk-jpl/src/c/modules/SmbGradientsx/SmbGradientsx.cpp (modified) * issm/trunk-jpl/src/c/modules/SmearFunctionx/SmearFunctionx.cpp (modified) * issm/trunk-jpl/src/c/modules/SurfaceAbsVelMisfitx/SurfaceAbsVelMisfitx.cpp (modified) * issm/trunk-jpl/src/c/modules/SurfaceAreax/SurfaceAreax.cpp (modified) * issm/trunk-jpl/src/c/modules/SurfaceAverageVelMisfitx/SurfaceAverageVelMisfitx.cpp (modified) * issm/trunk-jpl/src/c/modules/SurfaceLogVelMisfitx/SurfaceLogVelMisfitx.cpp (modified) * issm/trunk-jpl/src/c/modules/SurfaceLogVxVyMisfitx/SurfaceLogVxVyMisfitx.cpp (modified) * issm/trunk-jpl/src/c/modules/SurfaceRelVelMisfitx/SurfaceRelVelMisfitx.cpp (modified) * issm/trunk-jpl/src/c/modules/SystemMatricesx/SystemMatricesx.cpp (modified) * issm/trunk-jpl/src/c/modules/ThicknessAbsMisfitx/ThicknessAbsMisfitx.cpp (modified) * issm/trunk-jpl/src/c/modules/ThicknessAcrossGradientx/ThicknessAcrossGradientx.cpp (modified) * issm/trunk-jpl/src/c/modules/ThicknessAlongGradientx/ThicknessAlongGradientx.cpp (modified) * issm/trunk-jpl/src/c/modules/TotalSmbx/TotalSmbx.cpp (modified) * issm/trunk-jpl/src/c/solutions/DakotaSpawnCore.cpp (modified) * issm/trunk-jpl/src/c/solutions/kriging.cpp (modified) * issm/trunk-jpl/src/c/solvers/solver_nonlinear.cpp (modified) CHG: use dynamic_cast instead of C-style casting Mon, 22 Oct 2012 21:33:45 GMT Mathieu Morlighem [13797] * issm/trunk-jpl/src/c/Container/Constraints.h (modified) * issm/trunk-jpl/src/c/Container/DataSet.h (modified) * issm/trunk-jpl/src/c/Container/Elements.h (modified) * issm/trunk-jpl/src/c/Container/Inputs.cpp (modified) * issm/trunk-jpl/src/c/Container/Inputs.h (modified) * issm/trunk-jpl/src/c/Container/Loads.cpp (modified) * issm/trunk-jpl/src/c/Container/Loads.h (modified) * issm/trunk-jpl/src/c/Container/Materials.cpp (modified) * issm/trunk-jpl/src/c/Container/Materials.h (modified) * issm/trunk-jpl/src/c/Container/Nodes.h (modified) * issm/trunk-jpl/src/c/Container/Observations.cpp (modified) * issm/trunk-jpl/src/c/Container/Options.cpp (modified) * issm/trunk-jpl/src/c/Container/Options.h (modified) * issm/trunk-jpl/src/c/Container/Parameters.cpp (modified) * issm/trunk-jpl/src/c/Container/Results.cpp (modified) * issm/trunk-jpl/src/c/Container/Results.h (modified) * issm/trunk-jpl/src/c/Container/Vertices.cpp (modified) * issm/trunk-jpl/src/c/solutions/EnvironmentFinalize.cpp (modified) CHG: use dynamic_cast instead of C-style casting Mon, 22 Oct 2012 21:29:33 GMT Mathieu Morlighem [13796] * issm/trunk-jpl/externalpackages/petsc/install-3.3-pleiades.sh (modified) CHG: no need to have 2 steps anymore Mon, 22 Oct 2012 21:14:38 GMT Mathieu Morlighem [13795] * issm/trunk-jpl/src/m/geometry/isconnected.m (added) NEW: Readded isconnected.m Mon, 22 Oct 2012 20:58:23 GMT Eric.Larour [13794] * issm/trunk-jpl/externalpackages/petsc/install-3.3-pleiades.sh (modified) CHG: petsc 3.3 pleaides Mon, 22 Oct 2012 20:54:12 GMT habbalf [13793] * issm/trunk-jpl/externalpackages/petsc/install-dev-pleiades.sh (modified) Updating petsc script for pleiades Mon, 22 Oct 2012 20:39:05 GMT cborstad [13792] * issm/trunk-jpl/src/m/inversions/misfit.m (modified) * issm/trunk-jpl/src/m/plot/northarrow.m (modified) CHG: undoing previous commit to northarrow and misfit, did not mean ... Mon, 22 Oct 2012 20:38:58 GMT Eric.Larour [13791] * issm/trunk-jpl/externalpackages/petsc/install-3.3-pleiades.sh (added) NEW: 3.3 petsc install on pleiades Mon, 22 Oct 2012 20:36:40 GMT Mathieu Morlighem [13790] * issm/trunk-jpl/src/c/Container/Elements.cpp (modified) * issm/trunk-jpl/src/c/Container/Nodes.cpp (modified) * issm/trunk-jpl/src/c/Container/Options.h (modified) CHG: some issues reported by cppcheck and now use C++ casting operator Mon, 22 Oct 2012 20:35:40 GMT cborstad [13789] * issm/trunk-jpl/src/m/inversions/misfit.m (modified) * issm/trunk-jpl/src/m/plot/northarrow.m (modified) * issm/trunk-jpl/startup.py (modified) CHG: modified startup.py to avoid appending redundant directories to ... Mon, 22 Oct 2012 20:25:12 GMT Mathieu Morlighem [13788] * issm/trunk-jpl/src/c/classes/dakota/DakotaPlugin.cpp (modified) BUG: fixed compilation of dakota Mon, 22 Oct 2012 19:01:50 GMT Mathieu Morlighem [13787] * issm/trunk-jpl/src/c/classes/IoModel.cpp (modified) * issm/trunk-jpl/src/c/classes/dakota/DakotaPlugin.cpp (modified) * issm/trunk-jpl/src/c/classes/dakota/DakotaPlugin.h (modified) * issm/trunk-jpl/src/c/classes/objects/Elements/Penta.cpp (modified) * issm/trunk-jpl/src/c/classes/objects/Elements/Tria.cpp (modified) * issm/trunk-jpl/src/c/classes/objects/Inputs/TriaP1Input.cpp (modified) * issm/trunk-jpl/src/c/classes/objects/KML/KMLFileReadUtils.cpp (modified) * issm/trunk-jpl/src/c/classes/objects/Loads/Riftfront.cpp (modified) * issm/trunk-jpl/src/c/modules/ContourToNodesx/ContourToNodesx.cpp (modified) * issm/trunk-jpl/src/c/modules/HoleFillerx/HoleFillerx.cpp (modified) * issm/trunk-jpl/src/c/modules/InterpFromGridToMeshx/InterpFromGridToMeshx.cpp (modified) * issm/trunk-jpl/src/c/modules/InterpFromMesh2dx/InterpFromMesh2dx.cpp (modified) * issm/trunk-jpl/src/c/modules/InterpFromMeshToMesh2dx/InterpFromMeshToMesh2dx.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/Control/CreateParametersControl.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/CreateElementsVerticesAndMaterials.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/DiagnosticHoriz/CreateConstraintsDiagnosticHoriz.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/DistributeNumDofs.cpp (modified) * issm/trunk-jpl/src/c/modules/SystemMatricesx/SystemMatricesx.cpp (modified) * issm/trunk-jpl/src/c/solutions/dakota_core.cpp (modified) * issm/trunk-jpl/src/c/toolkits/petsc/patches/ISSMToPetscInsertMode.cpp (modified) * issm/trunk-jpl/src/c/toolkits/petsc/patches/ISSMToPetscMatrixType.cpp (modified) * issm/trunk-jpl/src/c/toolkits/petsc/patches/ISSMToPetscNormMode.cpp (modified) CHG: more problems reported by cppcheck Mon, 22 Oct 2012 18:51:47 GMT cborstad [13786] * issm/trunk-jpl/configs/config-macosx64-chris-bothapis.sh (modified) CHG: updated config script Mon, 22 Oct 2012 18:43:34 GMT Mathieu Morlighem [13785] * issm/trunk-jpl/src/c/shared/Numerics/isnan.cpp (deleted) DEL: not needed anymore Mon, 22 Oct 2012 17:35:47 GMT Mathieu Morlighem [13784] * issm/trunk-jpl/src/c/classes/FemModel.cpp (modified) * issm/trunk-jpl/src/c/toolkits/petsc/objects/PetscMat.cpp (modified) * issm/trunk-jpl/src/c/toolkits/petsc/objects/PetscVec.cpp (modified) * issm/trunk-jpl/src/c/toolkits/petsc/patches/GetOwnershipBoundariesFromRange.cpp (modified) * issm/trunk-jpl/src/c/toolkits/petsc/patches/KSPFree.cpp (modified) * issm/trunk-jpl/src/c/toolkits/petsc/patches/MatFree.cpp (modified) * issm/trunk-jpl/src/c/toolkits/petsc/patches/MatMultPatch.cpp (modified) * issm/trunk-jpl/src/c/toolkits/petsc/patches/NewMat.cpp (modified) * issm/trunk-jpl/src/c/toolkits/petsc/patches/PetscMatrixToDoubleMatrix.cpp (modified) * issm/trunk-jpl/src/c/toolkits/petsc/patches/PetscOptionsInsertMultipleString.cpp (modified) * issm/trunk-jpl/src/c/toolkits/petsc/patches/PetscVectorToDoubleVector.cpp (modified) * issm/trunk-jpl/src/c/toolkits/petsc/patches/VecDuplicatePatch.cpp (modified) * issm/trunk-jpl/src/c/toolkits/petsc/patches/VecFree.cpp (modified) * issm/trunk-jpl/src/c/toolkits/petsc/patches/VecMerge.cpp (modified) * issm/trunk-jpl/src/c/toolkits/plapack/patches/CyclicalFactorization.cpp (modified) * issm/trunk-jpl/src/c/toolkits/plapack/patches/PlapackInvertMatrix.cpp (modified) * issm/trunk-jpl/src/c/toolkits/plapack/patches/PlapackToPetsc.cpp (modified) * issm/trunk-jpl/src/c/toolkits/plapack/plapackincludes.h (modified) CHG: fixed some problems reported by cppcheck Mon, 22 Oct 2012 16:18:33 GMT Eric.Larour [13783] * issm/trunk-jpl/src/c/Makefile.am (modified) CHG: isnan.cpp not needed anymore Mon, 22 Oct 2012 16:18:02 GMT Eric.Larour [13782] * issm/trunk-jpl/src/c/shared/Numerics/isnan.h (modified) CHG: resolved bug on murdo with isnan not working when including ... Mon, 22 Oct 2012 16:11:58 GMT Eric.Larour [13781] * issm/trunk-jpl/src/c/classes/FemModel.cpp (modified) CHG: bad indexing Mon, 22 Oct 2012 15:26:39 GMT Mathieu Morlighem [13780] * issm/trunk-jpl/src/c/Container/Elements.cpp (modified) * issm/trunk-jpl/src/c/Container/Loads.cpp (modified) * issm/trunk-jpl/src/c/Container/Observations.cpp (modified) * issm/trunk-jpl/src/c/Container/Options.h (modified) * issm/trunk-jpl/src/c/classes/matrix/Matrix.h (modified) * issm/trunk-jpl/src/c/classes/objects/Options/GenericOption.h (modified) * issm/trunk-jpl/src/c/include/types.h (modified) * issm/trunk-jpl/src/c/modules/TriMeshx/TriMeshx.h (modified) * issm/trunk-jpl/src/c/toolkits/issm/SeqVec.h (modified) * issm/trunk-jpl/src/c/toolkits/mpi/mpiincludes.h (modified) * issm/trunk-jpl/src/c/toolkits/petsc/patches/petscpatches.h (modified) CHG: some problems reported by cppcheck Mon, 22 Oct 2012 14:16:55 GMT Eric.Larour [13779] * issm/trunk-jpl/configs/config-linux64-murdo.sh (modified) CHG: python version not needed anymore Mon, 22 Oct 2012 14:04:08 GMT Eric.Larour [13778] * issm/trunk-jpl/configs/config-linux64-murdo.sh (modified) CHG: plapack and scalapack not needed anymore Mon, 22 Oct 2012 13:58:26 GMT Eric.Larour [13777] * issm/trunk-jpl/configs/config-linux64-murdo.sh (modified) CHG: include python build Mon, 22 Oct 2012 13:58:00 GMT Eric.Larour [13776] * issm/trunk-jpl/src/Makefile.am (modified) CHG: py directory does not exist anymore Mon, 22 Oct 2012 13:56:59 GMT Eric.Larour [13775] * issm/trunk-jpl/externalpackages/gmp (modified) CHG: get svn to ignore some files Mon, 22 Oct 2012 13:56:29 GMT Eric.Larour [13774] * issm/trunk-jpl/externalpackages/hdf5/install.sh (modified) CHG: multithreaded install Mon, 22 Oct 2012 13:55:34 GMT Eric.Larour [13773] * issm/trunk-jpl/externalpackages/gmp (added) * issm/trunk-jpl/externalpackages/gmp/install-linux64.sh (added) NEW: gmp package Mon, 22 Oct 2012 04:12:40 GMT ltnguyen [13772] * issm/trunk-jpl/src/android/helloworld/code (added) * issm/trunk-jpl/src/android/helloworld/code/Main.cpp (added) * issm/trunk-jpl/src/android/helloworld/code/com_lan_factorial_FacLib.h (added) * issm/trunk-jpl/src/android/helloworld/code/fac.cpp (added) * issm/trunk-jpl/src/android/helloworld/code/fac.h (added) this is code for factorial app Sat, 20 Oct 2012 21:39:50 GMT Mathieu Morlighem [13771] * issm/trunk-jpl/src/m/plot/applyoptions.py (modified) * issm/trunk-jpl/src/m/plot/plot_manager.py (modified) * issm/trunk-jpl/src/m/plot/plot_mesh.py (modified) * issm/trunk-jpl/src/m/plot/plot_unit.py (modified) * issm/trunk-jpl/src/m/plot/plotmodel.py (modified) BUG: matplotlib might not have been installed, startup.py should not ... Sat, 20 Oct 2012 20:52:44 GMT Mathieu Morlighem [13770] * issm/trunk-jpl/m4/issm_options.m4 (modified) BUG: linking to correct python lib Sat, 20 Oct 2012 19:13:47 GMT Mathieu Morlighem [13769] * issm/trunk-jpl/src/c/classes/AdolcEdf.h (modified) * issm/trunk-jpl/src/c/shared/Numerics/isnan.h (modified) CHG: fixed some double blank lines Sat, 20 Oct 2012 18:59:27 GMT Mathieu Morlighem [13768] * issm/trunk-jpl/src/wrappers/matlab/Makefile.am (modified) BUG: could not compile with PETSc Sat, 20 Oct 2012 07:24:34 GMT Eric.Larour [13767] * issm/trunk-jpl/src/c/classes/AdolcEdf.h (modified) * issm/trunk-jpl/src/c/classes/objects/Options/GenericOption.h (modified) * issm/trunk-jpl/src/c/include/types.h (modified) * issm/trunk-jpl/src/c/modules/Solverx/Solverx.h (modified) * issm/trunk-jpl/src/c/shared/Numerics/isnan.h (modified) * issm/trunk-jpl/src/c/shared/Numerics/recast.h (modified) * issm/trunk-jpl/src/wrappers/matlab/Makefile.am (modified) * issm/trunk-jpl/src/wrappers/matlab/io/MatlabMatrixToPetscMat.cpp (modified) * issm/trunk-jpl/src/wrappers/python/Makefile.am (modified) CHG: made necessary changes to repair the broken adolc compile. Had ... Sat, 20 Oct 2012 07:23:25 GMT Eric.Larour [13766] * issm/trunk-jpl/configs/config-arm-linux.sh (modified) CHG: missing with-android Sat, 20 Oct 2012 06:49:38 GMT Eric.Larour [13765] * issm/trunk-jpl/src/c/classes/FemModel.cpp (modified) CHG: compile petsc initialize and finalize only if petsc is available Sat, 20 Oct 2012 00:36:02 GMT Mathieu Morlighem [13764] * issm/trunk-jpl/src/c/solutions/ResetBoundaryConditions.cpp (modified) * issm/trunk-jpl/src/c/solutions/controlconvergence.cpp (modified) * issm/trunk-jpl/src/c/solutions/kriging.cpp (modified) * issm/trunk-jpl/src/c/solutions/objectivefunction.cpp (modified) * issm/trunk-jpl/src/c/solutions/thermal_core.cpp (modified) CHG: some cleanup from cppcheck Sat, 20 Oct 2012 00:35:57 GMT Mathieu Morlighem [13763] * issm/trunk-jpl/src/c/Container/DataSet.cpp (modified) * issm/trunk-jpl/src/c/Container/Elements.cpp (modified) * issm/trunk-jpl/src/c/Container/Observations.cpp (modified) * issm/trunk-jpl/src/c/Container/Options.h (modified) CHG: some cleanup from cppcheck Sat, 20 Oct 2012 00:31:29 GMT Mathieu Morlighem [13762] * issm/trunk-jpl/src/c/modules/AverageOntoPartitionx/AverageOntoPartitionx.cpp (modified) * issm/trunk-jpl/src/c/modules/Bamgx/Bamgx.cpp (modified) * issm/trunk-jpl/src/c/modules/ConstraintsStatex/RiftConstraintsState.cpp (modified) * issm/trunk-jpl/src/c/modules/ContourToMeshx/ContourToMeshx.cpp (modified) * issm/trunk-jpl/src/c/modules/ContourToNodesx/ContourToNodesx.cpp (modified) * issm/trunk-jpl/src/c/modules/HoleFillerx/HoleFillerx.cpp (modified) * issm/trunk-jpl/src/c/modules/InterpFromMeshToMesh2dx/InterpFromMeshToMesh2dx.cpp (modified) * issm/trunk-jpl/src/c/modules/IoModelToConstraintsx/IoModelToConstraintsx.cpp (modified) * issm/trunk-jpl/src/c/modules/Kml2Expx/Kml2Expx.cpp (modified) * issm/trunk-jpl/src/c/modules/MeshProfileIntersectionx/ElementSegment.cpp (modified) * issm/trunk-jpl/src/c/modules/MeshProfileIntersectionx/MeshProfileIntersectionx.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/Balancethickness/CreateConstraintsBalancethickness.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/Balancethickness/CreateLoadsBalancethickness.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/Balancethickness/CreateNodesBalancethickness.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/BedSlope/CreateConstraintsBedSlope.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/BedSlope/CreateLoadsBedSlope.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/BedSlope/CreateNodesBedSlope.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/DiagnosticHoriz/CreateLoadsDiagnosticHoriz.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/DiagnosticHoriz/CreateNodesDiagnosticHoriz.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/DiagnosticHutter/CreateLoadsDiagnosticHutter.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/DiagnosticHutter/CreateNodesDiagnosticHutter.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/DiagnosticVert/CreateConstraintsDiagnosticVert.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/DiagnosticVert/CreateLoadsDiagnosticVert.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/DiagnosticVert/CreateNodesDiagnosticVert.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/Enthalpy/CreateConstraintsEnthalpy.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/Enthalpy/CreateLoadsEnthalpy.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/Enthalpy/CreateNodesEnthalpy.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/Hydrology/CreateConstraintsHydrology.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/Hydrology/CreateLoadsHydrology.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/Hydrology/CreateNodesHydrology.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/Melting/CreateConstraintsMelting.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/Melting/CreateLoadsMelting.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/Melting/CreateNodesMelting.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/Prognostic/CreateConstraintsPrognostic.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/Prognostic/CreateLoadsPrognostic.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/Prognostic/CreateNodesPrognostic.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/SurfaceSlope/CreateConstraintsSurfaceSlope.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/SurfaceSlope/CreateLoadsSurfaceSlope.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/SurfaceSlope/CreateNodesSurfaceSlope.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/Thermal/CreateConstraintsThermal.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/Thermal/CreateLoadsThermal.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/Thermal/CreateNodesThermal.cpp (modified) * issm/trunk-jpl/src/c/modules/NodesDofx/NodesDofx.cpp (modified) * issm/trunk-jpl/src/c/modules/Orthx/Orthx.cpp (modified) * issm/trunk-jpl/src/c/modules/Reduceloadx/Reduceloadx.cpp (modified) * issm/trunk-jpl/src/c/modules/Solverx/Solverx.cpp (modified) * issm/trunk-jpl/src/c/modules/Solverx/SolverxPetsc.cpp (modified) * issm/trunk-jpl/src/c/modules/TriaSearchx/TriaSearchx.cpp (modified) CHG: some cleanup from cppcheck Sat, 20 Oct 2012 00:31:15 GMT Mathieu Morlighem [13761] * issm/trunk-jpl/src/c/classes/DofIndexing.cpp (modified) * issm/trunk-jpl/src/c/classes/FemModel.cpp (modified) * issm/trunk-jpl/src/c/classes/IoModel.cpp (modified) * issm/trunk-jpl/src/c/classes/Patch.cpp (modified) * issm/trunk-jpl/src/c/classes/bamg/Geometry.cpp (modified) * issm/trunk-jpl/src/c/classes/bamg/Mesh.cpp (modified) * issm/trunk-jpl/src/c/classes/bamg/R2.h (modified) * issm/trunk-jpl/src/c/classes/kriging/Observation.cpp (modified) * issm/trunk-jpl/src/c/classes/matrix/ElementVector.cpp (modified) * issm/trunk-jpl/src/c/classes/objects/Elements/Penta.cpp (modified) * issm/trunk-jpl/src/c/classes/objects/Elements/PentaRef.cpp (modified) * issm/trunk-jpl/src/c/classes/objects/Elements/Tria.cpp (modified) * issm/trunk-jpl/src/c/classes/objects/ExternalResults/GenericExternalResult.h (modified) * issm/trunk-jpl/src/c/classes/objects/Inputs/PentaP1Input.cpp (modified) * issm/trunk-jpl/src/c/classes/objects/KML/KML_File.cpp (modified) * issm/trunk-jpl/src/c/classes/objects/KML/KML_LineStyle.cpp (modified) * issm/trunk-jpl/src/c/classes/objects/KML/KML_PolyStyle.cpp (modified) * issm/trunk-jpl/src/c/classes/objects/Loads/Friction.cpp (modified) * issm/trunk-jpl/src/c/classes/objects/Loads/Icefront.cpp (modified) * issm/trunk-jpl/src/c/classes/objects/Loads/Numericalflux.cpp (modified) * issm/trunk-jpl/src/c/classes/objects/Loads/Pengrid.cpp (modified) * issm/trunk-jpl/src/c/classes/objects/Loads/Penpair.cpp (modified) * issm/trunk-jpl/src/c/classes/objects/Loads/Riftfront.cpp (modified) * issm/trunk-jpl/src/c/classes/objects/Materials/Matdamageice.cpp (modified) * issm/trunk-jpl/src/c/classes/objects/Materials/Matice.cpp (modified) * issm/trunk-jpl/src/c/classes/objects/Node.cpp (modified) * issm/trunk-jpl/src/c/classes/objects/Params/MatrixParam.cpp (modified) * issm/trunk-jpl/src/c/classes/objects/Params/TransientParam.cpp (modified) * issm/trunk-jpl/src/c/classes/objects/Params/VectorParam.cpp (modified) CHG: some cleanup from cppcheck Sat, 20 Oct 2012 00:30:55 GMT Mathieu Morlighem [13760] * issm/trunk-jpl/src/c/toolkits/issm/SeqMat.h (modified) * issm/trunk-jpl/src/c/toolkits/petsc/patches/MatMultPatch.cpp (modified) * issm/trunk-jpl/src/c/toolkits/petsc/patches/NewMat.cpp (modified) * issm/trunk-jpl/src/c/toolkits/petsc/patches/NewVec.cpp (modified) * issm/trunk-jpl/src/c/toolkits/petsc/patches/PetscMatrixToDoubleMatrix.cpp (modified) * issm/trunk-jpl/src/c/toolkits/petsc/patches/PetscOptionsInsertMultipleString.cpp (modified) * issm/trunk-jpl/src/c/toolkits/petsc/patches/VecMerge.cpp (modified) * issm/trunk-jpl/src/c/toolkits/plapack/patches/PlapackInvertMatrix.cpp (modified) CHG: some cleanup from cppcheck Sat, 20 Oct 2012 00:30:35 GMT Mathieu Morlighem [13759] * issm/trunk-jpl/src/c/solvers/solver_newton.cpp (modified) * issm/trunk-jpl/src/c/solvers/solver_stokescoupling_nonlinear.cpp (modified) CHG: some cleanup from cppcheck Sat, 20 Oct 2012 00:27:45 GMT Mathieu Morlighem [13758] * issm/trunk-jpl/src/c/shared/Elements/Paterson.cpp (modified) * issm/trunk-jpl/src/c/shared/Elements/PddSurfaceMassBalance.cpp (modified) * issm/trunk-jpl/src/c/shared/Elements/TransformLoadVectorCoord.cpp (modified) * issm/trunk-jpl/src/c/shared/Elements/TransformSolutionCoord.cpp (modified) * issm/trunk-jpl/src/c/shared/Exceptions/exprintf.cpp (modified) * issm/trunk-jpl/src/c/shared/Exp/IsInPolySerial.cpp (modified) * issm/trunk-jpl/src/c/shared/Exp/exp.h (modified) * issm/trunk-jpl/src/c/shared/Numerics/XZvectorsToCoordinateSystem.cpp (modified) CHG: some cleanup from cppcheck Sat, 20 Oct 2012 00:20:36 GMT Mathieu Morlighem [13757] * issm/trunk-jpl/src/c/io/Disk/WriteLockFile.cpp (modified) * issm/trunk-jpl/src/c/io/PrintfFunction.cpp (modified) CHG: some cleanup from cppcheck Fri, 19 Oct 2012 23:01:23 GMT Mathieu Morlighem [13756] * issm/trunk-jpl/m4/issm_options.m4 (modified) NEW: detetct if we are using petsc3.3, in which case metis library is ... Fri, 19 Oct 2012 22:40:20 GMT Mathieu Morlighem [13755] * issm/trunk-jpl/src/c/classes/objects/Elements/Penta.cpp (modified) * issm/trunk-jpl/src/c/classes/objects/Elements/Tria.cpp (modified) BUG: big bug: big big bug: gl_melting_rate was never initialized so ... Fri, 19 Oct 2012 18:48:23 GMT Mathieu Morlighem [13754] * issm/trunk-jpl/src/c/toolkits/petsc/patches/ISSMToPetscMatrixType.cpp (modified) * issm/trunk-jpl/src/c/toolkits/petsc/patches/petscpatches.h (modified) CHG: added const so that compiler does not complain about deprecated ... Fri, 19 Oct 2012 17:17:36 GMT Mathieu Morlighem [13753] * issm/trunk-jpl/src/wrappers/matlab/Makefile.am (modified) BUG: forgot to add MatlabToPetsc routines Fri, 19 Oct 2012 17:15:48 GMT Mathieu Morlighem [13752] * issm/trunk-jpl/src/c/matlab (deleted) DEL: not needed anymore Fri, 19 Oct 2012 17:09:33 GMT Eric.Larour [13751] * issm/trunk-jpl/configs/config-macosx64-larour.sh (modified) CHG: default config to do both apis Fri, 19 Oct 2012 16:59:33 GMT Mathieu Morlighem [13750] * issm/trunk-jpl/src/wrappers/matlab/include/matlabincludes.h (added) * issm/trunk-jpl/src/wrappers/python/include/pythonincludes.h (added) CHG: two files needed to compile wrappers Fri, 19 Oct 2012 16:59:06 GMT Mathieu Morlighem [13749] * issm/trunk-jpl/src/c/Makefile.am (modified) * issm/trunk-jpl/src/c/python (deleted) * issm/trunk-jpl/src/c/toolkits/python/pythonincludes.h (deleted) * issm/trunk-jpl/src/c/toolkits/toolkits.h (modified) * issm/trunk-jpl/src/wrappers/AverageFilter/AverageFilter.h (modified) * issm/trunk-jpl/src/wrappers/BamgConvertMesh/BamgConvertMesh.h (modified) * issm/trunk-jpl/src/wrappers/BamgMesher/BamgMesher.h (modified) * issm/trunk-jpl/src/wrappers/BamgTriangulate/BamgTriangulate.h (modified) * issm/trunk-jpl/src/wrappers/Chaco/Chaco.h (modified) * issm/trunk-jpl/src/wrappers/ContourToMesh/ContourToMesh.h (modified) * issm/trunk-jpl/src/wrappers/ContourToNodes/ContourToNodes.h (modified) * issm/trunk-jpl/src/wrappers/ElementConnectivity/ElementConnectivity.h (modified) * issm/trunk-jpl/src/wrappers/EnumToString/EnumToString.h (modified) * issm/trunk-jpl/src/wrappers/Exp2Kml/Exp2Kml.h (modified) * issm/trunk-jpl/src/wrappers/HoleFiller/HoleFiller.h (modified) * issm/trunk-jpl/src/wrappers/InternalFront/InternalFront.h (modified) * issm/trunk-jpl/src/wrappers/InterpFromGridToMesh/InterpFromGridToMesh.h (modified) * issm/trunk-jpl/src/wrappers/InterpFromMesh2d/InterpFromMesh2d.h (modified) * issm/trunk-jpl/src/wrappers/InterpFromMeshToGrid/InterpFromMeshToGrid.h (modified) * issm/trunk-jpl/src/wrappers/InterpFromMeshToMesh2d/InterpFromMeshToMesh2d.h (modified) * issm/trunk-jpl/src/wrappers/InterpFromMeshToMesh3d/InterpFromMeshToMesh3d.h (modified) * issm/trunk-jpl/src/wrappers/KMLFileRead/KMLFileRead.h (modified) * issm/trunk-jpl/src/wrappers/KMLMeshWrite/KMLMeshWrite.h (modified) * issm/trunk-jpl/src/wrappers/KMLOverlay/KMLOverlay.h (modified) * issm/trunk-jpl/src/wrappers/Kml2Exp/Kml2Exp.h (modified) * issm/trunk-jpl/src/wrappers/Kriging/Kriging.h (modified) * issm/trunk-jpl/src/wrappers/Ll2xy/Ll2xy.h (modified) * issm/trunk-jpl/src/wrappers/MeshPartition/MeshPartition.h (modified) * issm/trunk-jpl/src/wrappers/MeshProfileIntersection/MeshProfileIntersection.h (modified) * issm/trunk-jpl/src/wrappers/NodeConnectivity/NodeConnectivity.h (modified) * issm/trunk-jpl/src/wrappers/PointCloudFindNeighbors/PointCloudFindNeighbors.h (modified) * issm/trunk-jpl/src/wrappers/PropagateFlagsFromConnectivity/PropagateFlagsFromConnectivity.h (modified) * issm/trunk-jpl/src/wrappers/Scotch/Scotch.h (modified) * issm/trunk-jpl/src/wrappers/Shp2Kml/Shp2Kml.h (modified) * issm/trunk-jpl/src/wrappers/StringToEnum/StringToEnum.h (modified) * issm/trunk-jpl/src/wrappers/TriMesh/TriMesh.h (modified) * issm/trunk-jpl/src/wrappers/TriMeshProcessRifts/TriMeshProcessRifts.h (modified) * issm/trunk-jpl/src/wrappers/TriaSearch/TriaSearch.h (modified) * issm/trunk-jpl/src/wrappers/Xy2ll/Xy2ll.h (modified) * issm/trunk-jpl/src/wrappers/bindings.h (copied) * issm/trunk-jpl/src/wrappers/include (added) * issm/trunk-jpl/src/wrappers/include/issm-binding.h (moved) * issm/trunk-jpl/src/wrappers/matlab/Makefile.am (modified) * issm/trunk-jpl/src/wrappers/matlab/include (moved) * issm/trunk-jpl/src/wrappers/matlab/include/wrapper_macros.h (moved) * issm/trunk-jpl/src/wrappers/matlab/io (moved) * issm/trunk-jpl/src/wrappers/matlab/io/CheckNumMatlabArguments.cpp (modified) * issm/trunk-jpl/src/wrappers/matlab/io/FetchMatlabData.cpp (modified) * issm/trunk-jpl/src/wrappers/matlab/io/MatlabMatrixToDoubleMatrix.cpp (modified) * issm/trunk-jpl/src/wrappers/matlab/io/MatlabMatrixToMatrix.cpp (modified) * issm/trunk-jpl/src/wrappers/matlab/io/MatlabMatrixToPetscMat.cpp (modified) * issm/trunk-jpl/src/wrappers/matlab/io/MatlabMatrixToSeqMat.cpp (modified) * issm/trunk-jpl/src/wrappers/matlab/io/MatlabNArrayToNArray.cpp (modified) * issm/trunk-jpl/src/wrappers/matlab/io/MatlabVectorToDoubleVector.cpp (modified) * issm/trunk-jpl/src/wrappers/matlab/io/MatlabVectorToPetscVec.cpp (modified) * issm/trunk-jpl/src/wrappers/matlab/io/MatlabVectorToSeqVec.cpp (modified) * issm/trunk-jpl/src/wrappers/matlab/io/MatlabVectorToVector.cpp (modified) * issm/trunk-jpl/src/wrappers/matlab/io/OptionParse.cpp (modified) * issm/trunk-jpl/src/wrappers/matlab/io/WriteMatlabData.cpp (modified) * issm/trunk-jpl/src/wrappers/matlab/io/matlabio.h (modified) * issm/trunk-jpl/src/wrappers/matlab/io/mxGetAssignedField.cpp (modified) * issm/trunk-jpl/src/wrappers/python/Makefile.am (modified) * issm/trunk-jpl/src/wrappers/python/include (added) * issm/trunk-jpl/src/wrappers/python/include/wrapper_macros.h (copied) * issm/trunk-jpl/src/wrappers/python/io (copied) * issm/trunk-jpl/src/wrappers/python/io/CheckNumPythonArguments.cpp (modified) * issm/trunk-jpl/src/wrappers/python/io/FetchPythonData.cpp (modified) * issm/trunk-jpl/src/wrappers/python/io/WritePythonData.cpp (modified) * issm/trunk-jpl/src/wrappers/python/io/pythonio.h (modified) CHG: moved all matlab and python code from src/c/ to src/wrappers Fri, 19 Oct 2012 00:40:51 GMT Mathieu Morlighem [13748] * issm/trunk-jpl/m4/issm_options.m4 (modified) CHG: only include PETSc directories if they exist Fri, 19 Oct 2012 00:04:10 GMT Mathieu Morlighem [13747] * issm/trunk-jpl/src/c/toolkits/python/pythonincludes.h (modified) CHG: boost not used anymore Thu, 18 Oct 2012 23:43:53 GMT Eric.Larour [13746] * issm/trunk-jpl/configs/config-macosx64-larour-bothapis.sh (deleted) CHG: not needed anymore. Thu, 18 Oct 2012 23:30:51 GMT Eric.Larour [13745] * issm/trunk-jpl/src/py (deleted) CHG: not needed anymore Thu, 18 Oct 2012 23:22:56 GMT cborstad [13744] * issm/trunk-jpl/startup.py (modified) added plot modules to startup Thu, 18 Oct 2012 23:13:31 GMT seroussi [13743] * issm/trunk-jpl/src/wrappers/matlab/Makefile.am (modified) * issm/trunk-jpl/src/wrappers/python/Makefile.am (modified) BUG: reverting to previous ordering Thu, 18 Oct 2012 23:11:54 GMT Mathieu Morlighem [13742] * issm/trunk-jpl/externalpackages/mpich2/install-1.5-macosx64.sh (added) NEW: added install-1.5-macosx64.sh Thu, 18 Oct 2012 23:06:12 GMT jschierm [13741] * issm/trunk-jpl/src/m/geometry/FlagElements.py (modified) * issm/trunk-jpl/src/m/mesh/roundmesh.m (modified) * issm/trunk-jpl/src/m/mesh/roundmesh.py (added) NEW: Python version of roundmesh (plus cosmetic Matlab changes). Thu, 18 Oct 2012 22:43:37 GMT jschierm [13740] * issm/trunk-jpl/src/m/classes/diagnostic.py (modified) * issm/trunk-jpl/src/m/classes/flowequation.py (modified) * issm/trunk-jpl/src/m/classes/inversion.py (modified) * issm/trunk-jpl/src/m/classes/verbose.py (modified) BUG: Python's habit of copying pointers rather than data can be very ... Thu, 18 Oct 2012 21:19:13 GMT Mathieu Morlighem [13739] * issm/trunk-jpl/src/wrappers/matlab/Makefile.am (modified) * issm/trunk-jpl/src/wrappers/python/Makefile.am (modified) CHG: removed deps += ../../c/libISSMWrappers.a that was there twice, ... Thu, 18 Oct 2012 21:13:49 GMT Mathieu Morlighem [13738] * issm/trunk-jpl/externalpackages/distribute/install.sh (modified) BUG: reverted back, do not sudo python Thu, 18 Oct 2012 20:18:08 GMT Mathieu Morlighem [13737] * issm/trunk-jpl/m4/issm_options.m4 (modified) CHG: matlab version does not need to be detected (could not find it ... Thu, 18 Oct 2012 18:43:20 GMT Eric.Larour [13736] * issm/trunk-jpl/src/c/classes/FemModel.cpp (modified) * issm/trunk-jpl/src/c/solutions/EnvironmentFinalize.cpp (modified) * issm/trunk-jpl/src/c/solutions/EnvironmentInit.cpp (modified) CHG: pushed PetscInitialize and Finalize phases into FemModel ... Thu, 18 Oct 2012 18:37:32 GMT Mathieu Morlighem [13735] * issm/trunk-jpl/src/c/modules/TriMeshx/TriMeshx.cpp (modified) CHG: do not error out if triangle is not installed Thu, 18 Oct 2012 17:50:52 GMT Mathieu Morlighem [13734] * issm/trunk-jpl/externalpackages/netcdf/install-4.0.sh (deleted) * issm/trunk-jpl/externalpackages/netcdf/install.sh (moved) CHG: only one netcdf needs to be installed, no need to keep previous ... Thu, 18 Oct 2012 17:39:20 GMT Mathieu Morlighem [13733] * issm/trunk-jpl/externalpackages/git/install-nopython.sh (deleted) * issm/trunk-jpl/externalpackages/git/install.sh (modified) CHG: we don't need python for git Thu, 18 Oct 2012 16:27:07 GMT Mathieu Morlighem [13732] * issm/trunk-jpl/src/m/os/oshostname.m (modified) CHG: cosmetics