# # ChangeLog for / # # Generated by Trac 1.4.3 # 05/16/25 06:14:49 Mon, 22 Oct 2012 22:00:16 GMT Mathieu Morlighem [13798] * issm/trunk-jpl/src/c/Container/DataSet.cpp (modified) * issm/trunk-jpl/src/c/Container/Inputs.cpp (modified) * issm/trunk-jpl/src/c/Container/Nodes.cpp (modified) * issm/trunk-jpl/src/c/classes/FemModel.cpp (modified) * issm/trunk-jpl/src/c/classes/Hook.cpp (modified) * issm/trunk-jpl/src/c/classes/IoModel.cpp (modified) * issm/trunk-jpl/src/c/classes/bamg/Geometry.cpp (modified) * issm/trunk-jpl/src/c/modules/AverageOntoPartitionx/AverageOntoPartitionx.cpp (modified) * issm/trunk-jpl/src/c/modules/ComputeBasalStressx/ComputeBasalStressx.cpp (modified) * issm/trunk-jpl/src/c/modules/ComputeStrainRatex/ComputeStrainRatex.cpp (modified) * issm/trunk-jpl/src/c/modules/ConfigureObjectsx/ConfigureObjectsx.cpp (modified) * issm/trunk-jpl/src/c/modules/CreateJacobianMatrixx/CreateJacobianMatrixx.cpp (modified) * issm/trunk-jpl/src/c/modules/Delta18oParameterizationx/Delta18oParameterizationx.cpp (modified) * issm/trunk-jpl/src/c/modules/DragCoefficientAbsGradientx/DragCoefficientAbsGradientx.cpp (modified) * issm/trunk-jpl/src/c/modules/ElementResponsex/ElementResponsex.cpp (modified) * issm/trunk-jpl/src/c/modules/GetSolutionFromInputsx/GetSolutionFromInputsx.cpp (modified) * issm/trunk-jpl/src/c/modules/GetVectorFromInputsx/GetVectorFromInputsx.cpp (modified) * issm/trunk-jpl/src/c/modules/GroundinglineMigrationx/GroundinglineMigrationx.cpp (modified) * issm/trunk-jpl/src/c/modules/IceVolumex/IceVolumex.cpp (modified) * issm/trunk-jpl/src/c/modules/InputArtificialNoisex/InputArtificialNoisex.cpp (modified) * issm/trunk-jpl/src/c/modules/InputControlUpdatex/InputControlUpdatex.cpp (modified) * issm/trunk-jpl/src/c/modules/InputConvergencex/InputConvergencex.cpp (modified) * issm/trunk-jpl/src/c/modules/InputDuplicatex/InputDuplicatex.cpp (modified) * issm/trunk-jpl/src/c/modules/InputScalex/InputScalex.cpp (modified) * issm/trunk-jpl/src/c/modules/InputToResultx/InputToResultx.cpp (modified) * issm/trunk-jpl/src/c/modules/InputUpdateFromConstantx/InputUpdateFromConstantx.cpp (modified) * issm/trunk-jpl/src/c/modules/InputUpdateFromMatrixDakotax/InputUpdateFromMatrixDakotax.cpp (modified) * issm/trunk-jpl/src/c/modules/InputUpdateFromSolutionx/InputUpdateFromSolutionx.cpp (modified) * issm/trunk-jpl/src/c/modules/InputUpdateFromVectorDakotax/InputUpdateFromVectorDakotax.cpp (modified) * issm/trunk-jpl/src/c/modules/InputUpdateFromVectorx/InputUpdateFromVectorx.cpp (modified) * issm/trunk-jpl/src/c/modules/MinVelx/MinVelx.cpp (modified) * issm/trunk-jpl/src/c/modules/MinVxx/MinVxx.cpp (modified) * issm/trunk-jpl/src/c/modules/MinVyx/MinVyx.cpp (modified) * issm/trunk-jpl/src/c/modules/MinVzx/MinVzx.cpp (modified) * issm/trunk-jpl/src/c/modules/NodalValuex/NodalValuex.cpp (modified) * issm/trunk-jpl/src/c/modules/PositiveDegreeDayx/PositiveDegreeDayx.cpp (modified) * issm/trunk-jpl/src/c/modules/ResetCoordinateSystemx/ResetCoordinateSystemx.cpp (modified) * issm/trunk-jpl/src/c/modules/RheologyBbarAbsGradientx/RheologyBbarAbsGradientx.cpp (modified) * issm/trunk-jpl/src/c/modules/SmbGradientsx/SmbGradientsx.cpp (modified) * issm/trunk-jpl/src/c/modules/SmearFunctionx/SmearFunctionx.cpp (modified) * issm/trunk-jpl/src/c/modules/SurfaceAbsVelMisfitx/SurfaceAbsVelMisfitx.cpp (modified) * issm/trunk-jpl/src/c/modules/SurfaceAreax/SurfaceAreax.cpp (modified) * issm/trunk-jpl/src/c/modules/SurfaceAverageVelMisfitx/SurfaceAverageVelMisfitx.cpp (modified) * issm/trunk-jpl/src/c/modules/SurfaceLogVelMisfitx/SurfaceLogVelMisfitx.cpp (modified) * issm/trunk-jpl/src/c/modules/SurfaceLogVxVyMisfitx/SurfaceLogVxVyMisfitx.cpp (modified) * issm/trunk-jpl/src/c/modules/SurfaceRelVelMisfitx/SurfaceRelVelMisfitx.cpp (modified) * issm/trunk-jpl/src/c/modules/SystemMatricesx/SystemMatricesx.cpp (modified) * issm/trunk-jpl/src/c/modules/ThicknessAbsMisfitx/ThicknessAbsMisfitx.cpp (modified) * issm/trunk-jpl/src/c/modules/ThicknessAcrossGradientx/ThicknessAcrossGradientx.cpp (modified) * issm/trunk-jpl/src/c/modules/ThicknessAlongGradientx/ThicknessAlongGradientx.cpp (modified) * issm/trunk-jpl/src/c/modules/TotalSmbx/TotalSmbx.cpp (modified) * issm/trunk-jpl/src/c/solutions/DakotaSpawnCore.cpp (modified) * issm/trunk-jpl/src/c/solutions/kriging.cpp (modified) * issm/trunk-jpl/src/c/solvers/solver_nonlinear.cpp (modified) CHG: use dynamic_cast instead of C-style casting Mon, 22 Oct 2012 21:33:45 GMT Mathieu Morlighem [13797] * issm/trunk-jpl/src/c/Container/Constraints.h (modified) * issm/trunk-jpl/src/c/Container/DataSet.h (modified) * issm/trunk-jpl/src/c/Container/Elements.h (modified) * issm/trunk-jpl/src/c/Container/Inputs.cpp (modified) * issm/trunk-jpl/src/c/Container/Inputs.h (modified) * issm/trunk-jpl/src/c/Container/Loads.cpp (modified) * issm/trunk-jpl/src/c/Container/Loads.h (modified) * issm/trunk-jpl/src/c/Container/Materials.cpp (modified) * issm/trunk-jpl/src/c/Container/Materials.h (modified) * issm/trunk-jpl/src/c/Container/Nodes.h (modified) * issm/trunk-jpl/src/c/Container/Observations.cpp (modified) * issm/trunk-jpl/src/c/Container/Options.cpp (modified) * issm/trunk-jpl/src/c/Container/Options.h (modified) * issm/trunk-jpl/src/c/Container/Parameters.cpp (modified) * issm/trunk-jpl/src/c/Container/Results.cpp (modified) * issm/trunk-jpl/src/c/Container/Results.h (modified) * issm/trunk-jpl/src/c/Container/Vertices.cpp (modified) * issm/trunk-jpl/src/c/solutions/EnvironmentFinalize.cpp (modified) CHG: use dynamic_cast instead of C-style casting Mon, 22 Oct 2012 21:29:33 GMT Mathieu Morlighem [13796] * issm/trunk-jpl/externalpackages/petsc/install-3.3-pleiades.sh (modified) CHG: no need to have 2 steps anymore Mon, 22 Oct 2012 21:14:38 GMT Mathieu Morlighem [13795] * issm/trunk-jpl/src/m/geometry/isconnected.m (added) NEW: Readded isconnected.m Mon, 22 Oct 2012 20:58:23 GMT Eric.Larour [13794] * issm/trunk-jpl/externalpackages/petsc/install-3.3-pleiades.sh (modified) CHG: petsc 3.3 pleaides Mon, 22 Oct 2012 20:54:12 GMT habbalf [13793] * issm/trunk-jpl/externalpackages/petsc/install-dev-pleiades.sh (modified) Updating petsc script for pleiades Mon, 22 Oct 2012 20:39:05 GMT cborstad [13792] * issm/trunk-jpl/src/m/inversions/misfit.m (modified) * issm/trunk-jpl/src/m/plot/northarrow.m (modified) CHG: undoing previous commit to northarrow and misfit, did not mean ... Mon, 22 Oct 2012 20:38:58 GMT Eric.Larour [13791] * issm/trunk-jpl/externalpackages/petsc/install-3.3-pleiades.sh (added) NEW: 3.3 petsc install on pleiades Mon, 22 Oct 2012 20:36:40 GMT Mathieu Morlighem [13790] * issm/trunk-jpl/src/c/Container/Elements.cpp (modified) * issm/trunk-jpl/src/c/Container/Nodes.cpp (modified) * issm/trunk-jpl/src/c/Container/Options.h (modified) CHG: some issues reported by cppcheck and now use C++ casting operator Mon, 22 Oct 2012 20:35:40 GMT cborstad [13789] * issm/trunk-jpl/src/m/inversions/misfit.m (modified) * issm/trunk-jpl/src/m/plot/northarrow.m (modified) * issm/trunk-jpl/startup.py (modified) CHG: modified startup.py to avoid appending redundant directories to ... Mon, 22 Oct 2012 20:25:12 GMT Mathieu Morlighem [13788] * issm/trunk-jpl/src/c/classes/dakota/DakotaPlugin.cpp (modified) BUG: fixed compilation of dakota Mon, 22 Oct 2012 19:01:50 GMT Mathieu Morlighem [13787] * issm/trunk-jpl/src/c/classes/IoModel.cpp (modified) * issm/trunk-jpl/src/c/classes/dakota/DakotaPlugin.cpp (modified) * issm/trunk-jpl/src/c/classes/dakota/DakotaPlugin.h (modified) * issm/trunk-jpl/src/c/classes/objects/Elements/Penta.cpp (modified) * issm/trunk-jpl/src/c/classes/objects/Elements/Tria.cpp (modified) * issm/trunk-jpl/src/c/classes/objects/Inputs/TriaP1Input.cpp (modified) * issm/trunk-jpl/src/c/classes/objects/KML/KMLFileReadUtils.cpp (modified) * issm/trunk-jpl/src/c/classes/objects/Loads/Riftfront.cpp (modified) * issm/trunk-jpl/src/c/modules/ContourToNodesx/ContourToNodesx.cpp (modified) * issm/trunk-jpl/src/c/modules/HoleFillerx/HoleFillerx.cpp (modified) * issm/trunk-jpl/src/c/modules/InterpFromGridToMeshx/InterpFromGridToMeshx.cpp (modified) * issm/trunk-jpl/src/c/modules/InterpFromMesh2dx/InterpFromMesh2dx.cpp (modified) * issm/trunk-jpl/src/c/modules/InterpFromMeshToMesh2dx/InterpFromMeshToMesh2dx.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/Control/CreateParametersControl.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/CreateElementsVerticesAndMaterials.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/DiagnosticHoriz/CreateConstraintsDiagnosticHoriz.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/DistributeNumDofs.cpp (modified) * issm/trunk-jpl/src/c/modules/SystemMatricesx/SystemMatricesx.cpp (modified) * issm/trunk-jpl/src/c/solutions/dakota_core.cpp (modified) * issm/trunk-jpl/src/c/toolkits/petsc/patches/ISSMToPetscInsertMode.cpp (modified) * issm/trunk-jpl/src/c/toolkits/petsc/patches/ISSMToPetscMatrixType.cpp (modified) * issm/trunk-jpl/src/c/toolkits/petsc/patches/ISSMToPetscNormMode.cpp (modified) CHG: more problems reported by cppcheck Mon, 22 Oct 2012 18:51:47 GMT cborstad [13786] * issm/trunk-jpl/configs/config-macosx64-chris-bothapis.sh (modified) CHG: updated config script Mon, 22 Oct 2012 18:43:34 GMT Mathieu Morlighem [13785] * issm/trunk-jpl/src/c/shared/Numerics/isnan.cpp (deleted) DEL: not needed anymore Mon, 22 Oct 2012 17:35:47 GMT Mathieu Morlighem [13784] * issm/trunk-jpl/src/c/classes/FemModel.cpp (modified) * issm/trunk-jpl/src/c/toolkits/petsc/objects/PetscMat.cpp (modified) * issm/trunk-jpl/src/c/toolkits/petsc/objects/PetscVec.cpp (modified) * issm/trunk-jpl/src/c/toolkits/petsc/patches/GetOwnershipBoundariesFromRange.cpp (modified) * issm/trunk-jpl/src/c/toolkits/petsc/patches/KSPFree.cpp (modified) * issm/trunk-jpl/src/c/toolkits/petsc/patches/MatFree.cpp (modified) * issm/trunk-jpl/src/c/toolkits/petsc/patches/MatMultPatch.cpp (modified) * issm/trunk-jpl/src/c/toolkits/petsc/patches/NewMat.cpp (modified) * issm/trunk-jpl/src/c/toolkits/petsc/patches/PetscMatrixToDoubleMatrix.cpp (modified) * issm/trunk-jpl/src/c/toolkits/petsc/patches/PetscOptionsInsertMultipleString.cpp (modified) * issm/trunk-jpl/src/c/toolkits/petsc/patches/PetscVectorToDoubleVector.cpp (modified) * issm/trunk-jpl/src/c/toolkits/petsc/patches/VecDuplicatePatch.cpp (modified) * issm/trunk-jpl/src/c/toolkits/petsc/patches/VecFree.cpp (modified) * issm/trunk-jpl/src/c/toolkits/petsc/patches/VecMerge.cpp (modified) * issm/trunk-jpl/src/c/toolkits/plapack/patches/CyclicalFactorization.cpp (modified) * issm/trunk-jpl/src/c/toolkits/plapack/patches/PlapackInvertMatrix.cpp (modified) * issm/trunk-jpl/src/c/toolkits/plapack/patches/PlapackToPetsc.cpp (modified) * issm/trunk-jpl/src/c/toolkits/plapack/plapackincludes.h (modified) CHG: fixed some problems reported by cppcheck Mon, 22 Oct 2012 16:18:33 GMT Eric.Larour [13783] * issm/trunk-jpl/src/c/Makefile.am (modified) CHG: isnan.cpp not needed anymore Mon, 22 Oct 2012 16:18:02 GMT Eric.Larour [13782] * issm/trunk-jpl/src/c/shared/Numerics/isnan.h (modified) CHG: resolved bug on murdo with isnan not working when including ... Mon, 22 Oct 2012 16:11:58 GMT Eric.Larour [13781] * issm/trunk-jpl/src/c/classes/FemModel.cpp (modified) CHG: bad indexing Mon, 22 Oct 2012 15:26:39 GMT Mathieu Morlighem [13780] * issm/trunk-jpl/src/c/Container/Elements.cpp (modified) * issm/trunk-jpl/src/c/Container/Loads.cpp (modified) * issm/trunk-jpl/src/c/Container/Observations.cpp (modified) * issm/trunk-jpl/src/c/Container/Options.h (modified) * issm/trunk-jpl/src/c/classes/matrix/Matrix.h (modified) * issm/trunk-jpl/src/c/classes/objects/Options/GenericOption.h (modified) * issm/trunk-jpl/src/c/include/types.h (modified) * issm/trunk-jpl/src/c/modules/TriMeshx/TriMeshx.h (modified) * issm/trunk-jpl/src/c/toolkits/issm/SeqVec.h (modified) * issm/trunk-jpl/src/c/toolkits/mpi/mpiincludes.h (modified) * issm/trunk-jpl/src/c/toolkits/petsc/patches/petscpatches.h (modified) CHG: some problems reported by cppcheck Mon, 22 Oct 2012 14:16:55 GMT Eric.Larour [13779] * issm/trunk-jpl/configs/config-linux64-murdo.sh (modified) CHG: python version not needed anymore Mon, 22 Oct 2012 14:04:08 GMT Eric.Larour [13778] * issm/trunk-jpl/configs/config-linux64-murdo.sh (modified) CHG: plapack and scalapack not needed anymore Mon, 22 Oct 2012 13:58:26 GMT Eric.Larour [13777] * issm/trunk-jpl/configs/config-linux64-murdo.sh (modified) CHG: include python build Mon, 22 Oct 2012 13:58:00 GMT Eric.Larour [13776] * issm/trunk-jpl/src/Makefile.am (modified) CHG: py directory does not exist anymore Mon, 22 Oct 2012 13:56:59 GMT Eric.Larour [13775] * issm/trunk-jpl/externalpackages/gmp (modified) CHG: get svn to ignore some files Mon, 22 Oct 2012 13:56:29 GMT Eric.Larour [13774] * issm/trunk-jpl/externalpackages/hdf5/install.sh (modified) CHG: multithreaded install Mon, 22 Oct 2012 13:55:34 GMT Eric.Larour [13773] * issm/trunk-jpl/externalpackages/gmp (added) * issm/trunk-jpl/externalpackages/gmp/install-linux64.sh (added) NEW: gmp package Mon, 22 Oct 2012 04:12:40 GMT ltnguyen [13772] * issm/trunk-jpl/src/android/helloworld/code (added) * issm/trunk-jpl/src/android/helloworld/code/Main.cpp (added) * issm/trunk-jpl/src/android/helloworld/code/com_lan_factorial_FacLib.h (added) * issm/trunk-jpl/src/android/helloworld/code/fac.cpp (added) * issm/trunk-jpl/src/android/helloworld/code/fac.h (added) this is code for factorial app Sat, 20 Oct 2012 21:39:50 GMT Mathieu Morlighem [13771] * issm/trunk-jpl/src/m/plot/applyoptions.py (modified) * issm/trunk-jpl/src/m/plot/plot_manager.py (modified) * issm/trunk-jpl/src/m/plot/plot_mesh.py (modified) * issm/trunk-jpl/src/m/plot/plot_unit.py (modified) * issm/trunk-jpl/src/m/plot/plotmodel.py (modified) BUG: matplotlib might not have been installed, startup.py should not ... Sat, 20 Oct 2012 20:52:44 GMT Mathieu Morlighem [13770] * issm/trunk-jpl/m4/issm_options.m4 (modified) BUG: linking to correct python lib Sat, 20 Oct 2012 19:13:47 GMT Mathieu Morlighem [13769] * issm/trunk-jpl/src/c/classes/AdolcEdf.h (modified) * issm/trunk-jpl/src/c/shared/Numerics/isnan.h (modified) CHG: fixed some double blank lines Sat, 20 Oct 2012 18:59:27 GMT Mathieu Morlighem [13768] * issm/trunk-jpl/src/wrappers/matlab/Makefile.am (modified) BUG: could not compile with PETSc Sat, 20 Oct 2012 07:24:34 GMT Eric.Larour [13767] * issm/trunk-jpl/src/c/classes/AdolcEdf.h (modified) * issm/trunk-jpl/src/c/classes/objects/Options/GenericOption.h (modified) * issm/trunk-jpl/src/c/include/types.h (modified) * issm/trunk-jpl/src/c/modules/Solverx/Solverx.h (modified) * issm/trunk-jpl/src/c/shared/Numerics/isnan.h (modified) * issm/trunk-jpl/src/c/shared/Numerics/recast.h (modified) * issm/trunk-jpl/src/wrappers/matlab/Makefile.am (modified) * issm/trunk-jpl/src/wrappers/matlab/io/MatlabMatrixToPetscMat.cpp (modified) * issm/trunk-jpl/src/wrappers/python/Makefile.am (modified) CHG: made necessary changes to repair the broken adolc compile. Had ... Sat, 20 Oct 2012 07:23:25 GMT Eric.Larour [13766] * issm/trunk-jpl/configs/config-arm-linux.sh (modified) CHG: missing with-android Sat, 20 Oct 2012 06:49:38 GMT Eric.Larour [13765] * issm/trunk-jpl/src/c/classes/FemModel.cpp (modified) CHG: compile petsc initialize and finalize only if petsc is available Sat, 20 Oct 2012 00:36:02 GMT Mathieu Morlighem [13764] * issm/trunk-jpl/src/c/solutions/ResetBoundaryConditions.cpp (modified) * issm/trunk-jpl/src/c/solutions/controlconvergence.cpp (modified) * issm/trunk-jpl/src/c/solutions/kriging.cpp (modified) * issm/trunk-jpl/src/c/solutions/objectivefunction.cpp (modified) * issm/trunk-jpl/src/c/solutions/thermal_core.cpp (modified) CHG: some cleanup from cppcheck Sat, 20 Oct 2012 00:35:57 GMT Mathieu Morlighem [13763] * issm/trunk-jpl/src/c/Container/DataSet.cpp (modified) * issm/trunk-jpl/src/c/Container/Elements.cpp (modified) * issm/trunk-jpl/src/c/Container/Observations.cpp (modified) * issm/trunk-jpl/src/c/Container/Options.h (modified) CHG: some cleanup from cppcheck Sat, 20 Oct 2012 00:31:29 GMT Mathieu Morlighem [13762] * issm/trunk-jpl/src/c/modules/AverageOntoPartitionx/AverageOntoPartitionx.cpp (modified) * issm/trunk-jpl/src/c/modules/Bamgx/Bamgx.cpp (modified) * issm/trunk-jpl/src/c/modules/ConstraintsStatex/RiftConstraintsState.cpp (modified) * issm/trunk-jpl/src/c/modules/ContourToMeshx/ContourToMeshx.cpp (modified) * issm/trunk-jpl/src/c/modules/ContourToNodesx/ContourToNodesx.cpp (modified) * issm/trunk-jpl/src/c/modules/HoleFillerx/HoleFillerx.cpp (modified) * issm/trunk-jpl/src/c/modules/InterpFromMeshToMesh2dx/InterpFromMeshToMesh2dx.cpp (modified) * issm/trunk-jpl/src/c/modules/IoModelToConstraintsx/IoModelToConstraintsx.cpp (modified) * issm/trunk-jpl/src/c/modules/Kml2Expx/Kml2Expx.cpp (modified) * issm/trunk-jpl/src/c/modules/MeshProfileIntersectionx/ElementSegment.cpp (modified) * issm/trunk-jpl/src/c/modules/MeshProfileIntersectionx/MeshProfileIntersectionx.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/Balancethickness/CreateConstraintsBalancethickness.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/Balancethickness/CreateLoadsBalancethickness.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/Balancethickness/CreateNodesBalancethickness.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/BedSlope/CreateConstraintsBedSlope.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/BedSlope/CreateLoadsBedSlope.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/BedSlope/CreateNodesBedSlope.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/DiagnosticHoriz/CreateLoadsDiagnosticHoriz.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/DiagnosticHoriz/CreateNodesDiagnosticHoriz.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/DiagnosticHutter/CreateLoadsDiagnosticHutter.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/DiagnosticHutter/CreateNodesDiagnosticHutter.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/DiagnosticVert/CreateConstraintsDiagnosticVert.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/DiagnosticVert/CreateLoadsDiagnosticVert.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/DiagnosticVert/CreateNodesDiagnosticVert.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/Enthalpy/CreateConstraintsEnthalpy.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/Enthalpy/CreateLoadsEnthalpy.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/Enthalpy/CreateNodesEnthalpy.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/Hydrology/CreateConstraintsHydrology.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/Hydrology/CreateLoadsHydrology.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/Hydrology/CreateNodesHydrology.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/Melting/CreateConstraintsMelting.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/Melting/CreateLoadsMelting.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/Melting/CreateNodesMelting.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/Prognostic/CreateConstraintsPrognostic.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/Prognostic/CreateLoadsPrognostic.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/Prognostic/CreateNodesPrognostic.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/SurfaceSlope/CreateConstraintsSurfaceSlope.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/SurfaceSlope/CreateLoadsSurfaceSlope.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/SurfaceSlope/CreateNodesSurfaceSlope.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/Thermal/CreateConstraintsThermal.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/Thermal/CreateLoadsThermal.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/Thermal/CreateNodesThermal.cpp (modified) * issm/trunk-jpl/src/c/modules/NodesDofx/NodesDofx.cpp (modified) * issm/trunk-jpl/src/c/modules/Orthx/Orthx.cpp (modified) * issm/trunk-jpl/src/c/modules/Reduceloadx/Reduceloadx.cpp (modified) * issm/trunk-jpl/src/c/modules/Solverx/Solverx.cpp (modified) * issm/trunk-jpl/src/c/modules/Solverx/SolverxPetsc.cpp (modified) * issm/trunk-jpl/src/c/modules/TriaSearchx/TriaSearchx.cpp (modified) CHG: some cleanup from cppcheck Sat, 20 Oct 2012 00:31:15 GMT Mathieu Morlighem [13761] * issm/trunk-jpl/src/c/classes/DofIndexing.cpp (modified) * issm/trunk-jpl/src/c/classes/FemModel.cpp (modified) * issm/trunk-jpl/src/c/classes/IoModel.cpp (modified) * issm/trunk-jpl/src/c/classes/Patch.cpp (modified) * issm/trunk-jpl/src/c/classes/bamg/Geometry.cpp (modified) * issm/trunk-jpl/src/c/classes/bamg/Mesh.cpp (modified) * issm/trunk-jpl/src/c/classes/bamg/R2.h (modified) * issm/trunk-jpl/src/c/classes/kriging/Observation.cpp (modified) * issm/trunk-jpl/src/c/classes/matrix/ElementVector.cpp (modified) * issm/trunk-jpl/src/c/classes/objects/Elements/Penta.cpp (modified) * issm/trunk-jpl/src/c/classes/objects/Elements/PentaRef.cpp (modified) * issm/trunk-jpl/src/c/classes/objects/Elements/Tria.cpp (modified) * issm/trunk-jpl/src/c/classes/objects/ExternalResults/GenericExternalResult.h (modified) * issm/trunk-jpl/src/c/classes/objects/Inputs/PentaP1Input.cpp (modified) * issm/trunk-jpl/src/c/classes/objects/KML/KML_File.cpp (modified) * issm/trunk-jpl/src/c/classes/objects/KML/KML_LineStyle.cpp (modified) * issm/trunk-jpl/src/c/classes/objects/KML/KML_PolyStyle.cpp (modified) * issm/trunk-jpl/src/c/classes/objects/Loads/Friction.cpp (modified) * issm/trunk-jpl/src/c/classes/objects/Loads/Icefront.cpp (modified) * issm/trunk-jpl/src/c/classes/objects/Loads/Numericalflux.cpp (modified) * issm/trunk-jpl/src/c/classes/objects/Loads/Pengrid.cpp (modified) * issm/trunk-jpl/src/c/classes/objects/Loads/Penpair.cpp (modified) * issm/trunk-jpl/src/c/classes/objects/Loads/Riftfront.cpp (modified) * issm/trunk-jpl/src/c/classes/objects/Materials/Matdamageice.cpp (modified) * issm/trunk-jpl/src/c/classes/objects/Materials/Matice.cpp (modified) * issm/trunk-jpl/src/c/classes/objects/Node.cpp (modified) * issm/trunk-jpl/src/c/classes/objects/Params/MatrixParam.cpp (modified) * issm/trunk-jpl/src/c/classes/objects/Params/TransientParam.cpp (modified) * issm/trunk-jpl/src/c/classes/objects/Params/VectorParam.cpp (modified) CHG: some cleanup from cppcheck Sat, 20 Oct 2012 00:30:55 GMT Mathieu Morlighem [13760] * issm/trunk-jpl/src/c/toolkits/issm/SeqMat.h (modified) * issm/trunk-jpl/src/c/toolkits/petsc/patches/MatMultPatch.cpp (modified) * issm/trunk-jpl/src/c/toolkits/petsc/patches/NewMat.cpp (modified) * issm/trunk-jpl/src/c/toolkits/petsc/patches/NewVec.cpp (modified) * issm/trunk-jpl/src/c/toolkits/petsc/patches/PetscMatrixToDoubleMatrix.cpp (modified) * issm/trunk-jpl/src/c/toolkits/petsc/patches/PetscOptionsInsertMultipleString.cpp (modified) * issm/trunk-jpl/src/c/toolkits/petsc/patches/VecMerge.cpp (modified) * issm/trunk-jpl/src/c/toolkits/plapack/patches/PlapackInvertMatrix.cpp (modified) CHG: some cleanup from cppcheck Sat, 20 Oct 2012 00:30:35 GMT Mathieu Morlighem [13759] * issm/trunk-jpl/src/c/solvers/solver_newton.cpp (modified) * issm/trunk-jpl/src/c/solvers/solver_stokescoupling_nonlinear.cpp (modified) CHG: some cleanup from cppcheck Sat, 20 Oct 2012 00:27:45 GMT Mathieu Morlighem [13758] * issm/trunk-jpl/src/c/shared/Elements/Paterson.cpp (modified) * issm/trunk-jpl/src/c/shared/Elements/PddSurfaceMassBalance.cpp (modified) * issm/trunk-jpl/src/c/shared/Elements/TransformLoadVectorCoord.cpp (modified) * issm/trunk-jpl/src/c/shared/Elements/TransformSolutionCoord.cpp (modified) * issm/trunk-jpl/src/c/shared/Exceptions/exprintf.cpp (modified) * issm/trunk-jpl/src/c/shared/Exp/IsInPolySerial.cpp (modified) * issm/trunk-jpl/src/c/shared/Exp/exp.h (modified) * issm/trunk-jpl/src/c/shared/Numerics/XZvectorsToCoordinateSystem.cpp (modified) CHG: some cleanup from cppcheck Sat, 20 Oct 2012 00:20:36 GMT Mathieu Morlighem [13757] * issm/trunk-jpl/src/c/io/Disk/WriteLockFile.cpp (modified) * issm/trunk-jpl/src/c/io/PrintfFunction.cpp (modified) CHG: some cleanup from cppcheck Fri, 19 Oct 2012 23:01:23 GMT Mathieu Morlighem [13756] * issm/trunk-jpl/m4/issm_options.m4 (modified) NEW: detetct if we are using petsc3.3, in which case metis library is ... Fri, 19 Oct 2012 22:40:20 GMT Mathieu Morlighem [13755] * issm/trunk-jpl/src/c/classes/objects/Elements/Penta.cpp (modified) * issm/trunk-jpl/src/c/classes/objects/Elements/Tria.cpp (modified) BUG: big bug: big big bug: gl_melting_rate was never initialized so ... Fri, 19 Oct 2012 18:48:23 GMT Mathieu Morlighem [13754] * issm/trunk-jpl/src/c/toolkits/petsc/patches/ISSMToPetscMatrixType.cpp (modified) * issm/trunk-jpl/src/c/toolkits/petsc/patches/petscpatches.h (modified) CHG: added const so that compiler does not complain about deprecated ... Fri, 19 Oct 2012 17:17:36 GMT Mathieu Morlighem [13753] * issm/trunk-jpl/src/wrappers/matlab/Makefile.am (modified) BUG: forgot to add MatlabToPetsc routines Fri, 19 Oct 2012 17:15:48 GMT Mathieu Morlighem [13752] * issm/trunk-jpl/src/c/matlab (deleted) DEL: not needed anymore Fri, 19 Oct 2012 17:09:33 GMT Eric.Larour [13751] * issm/trunk-jpl/configs/config-macosx64-larour.sh (modified) CHG: default config to do both apis Fri, 19 Oct 2012 16:59:33 GMT Mathieu Morlighem [13750] * issm/trunk-jpl/src/wrappers/matlab/include/matlabincludes.h (added) * issm/trunk-jpl/src/wrappers/python/include/pythonincludes.h (added) CHG: two files needed to compile wrappers Fri, 19 Oct 2012 16:59:06 GMT Mathieu Morlighem [13749] * issm/trunk-jpl/src/c/Makefile.am (modified) * issm/trunk-jpl/src/c/python (deleted) * issm/trunk-jpl/src/c/toolkits/python/pythonincludes.h (deleted) * issm/trunk-jpl/src/c/toolkits/toolkits.h (modified) * issm/trunk-jpl/src/wrappers/AverageFilter/AverageFilter.h (modified) * issm/trunk-jpl/src/wrappers/BamgConvertMesh/BamgConvertMesh.h (modified) * issm/trunk-jpl/src/wrappers/BamgMesher/BamgMesher.h (modified) * issm/trunk-jpl/src/wrappers/BamgTriangulate/BamgTriangulate.h (modified) * issm/trunk-jpl/src/wrappers/Chaco/Chaco.h (modified) * issm/trunk-jpl/src/wrappers/ContourToMesh/ContourToMesh.h (modified) * issm/trunk-jpl/src/wrappers/ContourToNodes/ContourToNodes.h (modified) * issm/trunk-jpl/src/wrappers/ElementConnectivity/ElementConnectivity.h (modified) * issm/trunk-jpl/src/wrappers/EnumToString/EnumToString.h (modified) * issm/trunk-jpl/src/wrappers/Exp2Kml/Exp2Kml.h (modified) * issm/trunk-jpl/src/wrappers/HoleFiller/HoleFiller.h (modified) * issm/trunk-jpl/src/wrappers/InternalFront/InternalFront.h (modified) * issm/trunk-jpl/src/wrappers/InterpFromGridToMesh/InterpFromGridToMesh.h (modified) * issm/trunk-jpl/src/wrappers/InterpFromMesh2d/InterpFromMesh2d.h (modified) * issm/trunk-jpl/src/wrappers/InterpFromMeshToGrid/InterpFromMeshToGrid.h (modified) * issm/trunk-jpl/src/wrappers/InterpFromMeshToMesh2d/InterpFromMeshToMesh2d.h (modified) * issm/trunk-jpl/src/wrappers/InterpFromMeshToMesh3d/InterpFromMeshToMesh3d.h (modified) * issm/trunk-jpl/src/wrappers/KMLFileRead/KMLFileRead.h (modified) * issm/trunk-jpl/src/wrappers/KMLMeshWrite/KMLMeshWrite.h (modified) * issm/trunk-jpl/src/wrappers/KMLOverlay/KMLOverlay.h (modified) * issm/trunk-jpl/src/wrappers/Kml2Exp/Kml2Exp.h (modified) * issm/trunk-jpl/src/wrappers/Kriging/Kriging.h (modified) * issm/trunk-jpl/src/wrappers/Ll2xy/Ll2xy.h (modified) * issm/trunk-jpl/src/wrappers/MeshPartition/MeshPartition.h (modified) * issm/trunk-jpl/src/wrappers/MeshProfileIntersection/MeshProfileIntersection.h (modified) * issm/trunk-jpl/src/wrappers/NodeConnectivity/NodeConnectivity.h (modified) * issm/trunk-jpl/src/wrappers/PointCloudFindNeighbors/PointCloudFindNeighbors.h (modified) * issm/trunk-jpl/src/wrappers/PropagateFlagsFromConnectivity/PropagateFlagsFromConnectivity.h (modified) * issm/trunk-jpl/src/wrappers/Scotch/Scotch.h (modified) * issm/trunk-jpl/src/wrappers/Shp2Kml/Shp2Kml.h (modified) * issm/trunk-jpl/src/wrappers/StringToEnum/StringToEnum.h (modified) * issm/trunk-jpl/src/wrappers/TriMesh/TriMesh.h (modified) * issm/trunk-jpl/src/wrappers/TriMeshProcessRifts/TriMeshProcessRifts.h (modified) * issm/trunk-jpl/src/wrappers/TriaSearch/TriaSearch.h (modified) * issm/trunk-jpl/src/wrappers/Xy2ll/Xy2ll.h (modified) * issm/trunk-jpl/src/wrappers/bindings.h (copied) * issm/trunk-jpl/src/wrappers/include (added) * issm/trunk-jpl/src/wrappers/include/issm-binding.h (moved) * issm/trunk-jpl/src/wrappers/matlab/Makefile.am (modified) * issm/trunk-jpl/src/wrappers/matlab/include (moved) * issm/trunk-jpl/src/wrappers/matlab/include/wrapper_macros.h (moved) * issm/trunk-jpl/src/wrappers/matlab/io (moved) * issm/trunk-jpl/src/wrappers/matlab/io/CheckNumMatlabArguments.cpp (modified) * issm/trunk-jpl/src/wrappers/matlab/io/FetchMatlabData.cpp (modified) * issm/trunk-jpl/src/wrappers/matlab/io/MatlabMatrixToDoubleMatrix.cpp (modified) * issm/trunk-jpl/src/wrappers/matlab/io/MatlabMatrixToMatrix.cpp (modified) * issm/trunk-jpl/src/wrappers/matlab/io/MatlabMatrixToPetscMat.cpp (modified) * issm/trunk-jpl/src/wrappers/matlab/io/MatlabMatrixToSeqMat.cpp (modified) * issm/trunk-jpl/src/wrappers/matlab/io/MatlabNArrayToNArray.cpp (modified) * issm/trunk-jpl/src/wrappers/matlab/io/MatlabVectorToDoubleVector.cpp (modified) * issm/trunk-jpl/src/wrappers/matlab/io/MatlabVectorToPetscVec.cpp (modified) * issm/trunk-jpl/src/wrappers/matlab/io/MatlabVectorToSeqVec.cpp (modified) * issm/trunk-jpl/src/wrappers/matlab/io/MatlabVectorToVector.cpp (modified) * issm/trunk-jpl/src/wrappers/matlab/io/OptionParse.cpp (modified) * issm/trunk-jpl/src/wrappers/matlab/io/WriteMatlabData.cpp (modified) * issm/trunk-jpl/src/wrappers/matlab/io/matlabio.h (modified) * issm/trunk-jpl/src/wrappers/matlab/io/mxGetAssignedField.cpp (modified) * issm/trunk-jpl/src/wrappers/python/Makefile.am (modified) * issm/trunk-jpl/src/wrappers/python/include (added) * issm/trunk-jpl/src/wrappers/python/include/wrapper_macros.h (copied) * issm/trunk-jpl/src/wrappers/python/io (copied) * issm/trunk-jpl/src/wrappers/python/io/CheckNumPythonArguments.cpp (modified) * issm/trunk-jpl/src/wrappers/python/io/FetchPythonData.cpp (modified) * issm/trunk-jpl/src/wrappers/python/io/WritePythonData.cpp (modified) * issm/trunk-jpl/src/wrappers/python/io/pythonio.h (modified) CHG: moved all matlab and python code from src/c/ to src/wrappers Fri, 19 Oct 2012 00:40:51 GMT Mathieu Morlighem [13748] * issm/trunk-jpl/m4/issm_options.m4 (modified) CHG: only include PETSc directories if they exist Fri, 19 Oct 2012 00:04:10 GMT Mathieu Morlighem [13747] * issm/trunk-jpl/src/c/toolkits/python/pythonincludes.h (modified) CHG: boost not used anymore Thu, 18 Oct 2012 23:43:53 GMT Eric.Larour [13746] * issm/trunk-jpl/configs/config-macosx64-larour-bothapis.sh (deleted) CHG: not needed anymore. Thu, 18 Oct 2012 23:30:51 GMT Eric.Larour [13745] * issm/trunk-jpl/src/py (deleted) CHG: not needed anymore Thu, 18 Oct 2012 23:22:56 GMT cborstad [13744] * issm/trunk-jpl/startup.py (modified) added plot modules to startup Thu, 18 Oct 2012 23:13:31 GMT seroussi [13743] * issm/trunk-jpl/src/wrappers/matlab/Makefile.am (modified) * issm/trunk-jpl/src/wrappers/python/Makefile.am (modified) BUG: reverting to previous ordering Thu, 18 Oct 2012 23:11:54 GMT Mathieu Morlighem [13742] * issm/trunk-jpl/externalpackages/mpich2/install-1.5-macosx64.sh (added) NEW: added install-1.5-macosx64.sh Thu, 18 Oct 2012 23:06:12 GMT jschierm [13741] * issm/trunk-jpl/src/m/geometry/FlagElements.py (modified) * issm/trunk-jpl/src/m/mesh/roundmesh.m (modified) * issm/trunk-jpl/src/m/mesh/roundmesh.py (added) NEW: Python version of roundmesh (plus cosmetic Matlab changes). Thu, 18 Oct 2012 22:43:37 GMT jschierm [13740] * issm/trunk-jpl/src/m/classes/diagnostic.py (modified) * issm/trunk-jpl/src/m/classes/flowequation.py (modified) * issm/trunk-jpl/src/m/classes/inversion.py (modified) * issm/trunk-jpl/src/m/classes/verbose.py (modified) BUG: Python's habit of copying pointers rather than data can be very ... Thu, 18 Oct 2012 21:19:13 GMT Mathieu Morlighem [13739] * issm/trunk-jpl/src/wrappers/matlab/Makefile.am (modified) * issm/trunk-jpl/src/wrappers/python/Makefile.am (modified) CHG: removed deps += ../../c/libISSMWrappers.a that was there twice, ... Thu, 18 Oct 2012 21:13:49 GMT Mathieu Morlighem [13738] * issm/trunk-jpl/externalpackages/distribute/install.sh (modified) BUG: reverted back, do not sudo python Thu, 18 Oct 2012 20:18:08 GMT Mathieu Morlighem [13737] * issm/trunk-jpl/m4/issm_options.m4 (modified) CHG: matlab version does not need to be detected (could not find it ... Thu, 18 Oct 2012 18:43:20 GMT Eric.Larour [13736] * issm/trunk-jpl/src/c/classes/FemModel.cpp (modified) * issm/trunk-jpl/src/c/solutions/EnvironmentFinalize.cpp (modified) * issm/trunk-jpl/src/c/solutions/EnvironmentInit.cpp (modified) CHG: pushed PetscInitialize and Finalize phases into FemModel ... Thu, 18 Oct 2012 18:37:32 GMT Mathieu Morlighem [13735] * issm/trunk-jpl/src/c/modules/TriMeshx/TriMeshx.cpp (modified) CHG: do not error out if triangle is not installed Thu, 18 Oct 2012 17:50:52 GMT Mathieu Morlighem [13734] * issm/trunk-jpl/externalpackages/netcdf/install-4.0.sh (deleted) * issm/trunk-jpl/externalpackages/netcdf/install.sh (moved) CHG: only one netcdf needs to be installed, no need to keep previous ... Thu, 18 Oct 2012 17:39:20 GMT Mathieu Morlighem [13733] * issm/trunk-jpl/externalpackages/git/install-nopython.sh (deleted) * issm/trunk-jpl/externalpackages/git/install.sh (modified) CHG: we don't need python for git Thu, 18 Oct 2012 16:27:07 GMT Mathieu Morlighem [13732] * issm/trunk-jpl/src/m/os/oshostname.m (modified) CHG: cosmetics Thu, 18 Oct 2012 16:13:59 GMT Mathieu Morlighem [13731] * issm/trunk-jpl/src/m/classes/pairoptions.m (modified) CHG: speeding up getfieldvalue Thu, 18 Oct 2012 15:55:28 GMT Mathieu Morlighem [13730] * issm/trunk-jpl/src/m/array/str2int.m (modified) * issm/trunk-jpl/src/m/classes/modellist.m (modified) * issm/trunk-jpl/src/m/contrib/bamg/meshread.m (modified) * issm/trunk-jpl/src/m/contrib/bamg/yams.m (modified) * issm/trunk-jpl/src/m/contrib/gslib/gamv.m (modified) * issm/trunk-jpl/src/m/contrib/gslib/gslib.m (modified) * issm/trunk-jpl/src/m/contrib/gslib/pkriging.m (modified) * issm/trunk-jpl/src/m/contrib/gslib/varmap.m (modified) * issm/trunk-jpl/src/m/contrib/massbalance/outflow.m (modified) * issm/trunk-jpl/src/m/exp/expcoarsen.m (modified) * issm/trunk-jpl/src/m/exp/expcreatecontour.m (modified) * issm/trunk-jpl/src/m/exp/expcreateprofile.m (modified) * issm/trunk-jpl/src/m/exp/expread.m (modified) * issm/trunk-jpl/src/m/exp/expwrite.m (modified) * issm/trunk-jpl/src/m/exp/manipulation/addcontour.m (modified) * issm/trunk-jpl/src/m/exp/manipulation/addendprofile.m (modified) * issm/trunk-jpl/src/m/exp/manipulation/addinsideprofile.m (modified) * issm/trunk-jpl/src/m/exp/manipulation/addprofile.m (modified) * issm/trunk-jpl/src/m/exp/manipulation/closeprofile.m (modified) * issm/trunk-jpl/src/m/exp/manipulation/cutarea.m (modified) * issm/trunk-jpl/src/m/exp/manipulation/cutprofile.m (modified) * issm/trunk-jpl/src/m/exp/manipulation/mergeprofiles.m (modified) * issm/trunk-jpl/src/m/exp/manipulation/modifyposition.m (modified) * issm/trunk-jpl/src/m/exp/manipulation/orientprofile.m (modified) * issm/trunk-jpl/src/m/exp/manipulation/removepoints.m (modified) * issm/trunk-jpl/src/m/exp/manipulation/removeprofile.m (modified) * issm/trunk-jpl/src/m/exp/manipulation/removeseveralpoints.m (modified) * issm/trunk-jpl/src/m/extrusion/DepthAverage.m (modified) * issm/trunk-jpl/src/m/extrusion/project3d.m (modified) * issm/trunk-jpl/src/m/interp/PatchToVec.m (modified) * issm/trunk-jpl/src/m/mech/cfl_step.m (modified) * issm/trunk-jpl/src/m/mesh/MeshQuality.m (modified) * issm/trunk-jpl/src/m/mesh/NodeInElement.m (modified) * issm/trunk-jpl/src/m/mesh/bamg.m (modified) * issm/trunk-jpl/src/m/mesh/rifts/meshaddrifts.m (modified) * issm/trunk-jpl/src/m/mesh/rifts/meshplug.m (modified) * issm/trunk-jpl/src/m/mesh/rifts/rifttipsrefine.m (modified) * issm/trunk-jpl/src/m/miscellaneous/fielddisplay.m (modified) * issm/trunk-jpl/src/m/partition/adjacency.m (modified) * issm/trunk-jpl/src/m/partition/flagedges.m (modified) * issm/trunk-jpl/src/m/plot/checkplotoptions.m (modified) * issm/trunk-jpl/src/m/plot/colormaps/haxby.m (modified) * issm/trunk-jpl/src/m/plot/kmlgroundoverlay.m (modified) * issm/trunk-jpl/src/m/plot/plot_BC.m (modified) * issm/trunk-jpl/src/m/plot/plot_basaldrag.m (modified) * issm/trunk-jpl/src/m/plot/plot_boundaries.m (modified) * issm/trunk-jpl/src/m/plot/plot_contour.m (modified) * issm/trunk-jpl/src/m/plot/plot_drivingstress.m (modified) * issm/trunk-jpl/src/m/plot/plot_edges.m (modified) * issm/trunk-jpl/src/m/plot/plot_elementnumbering.m (modified) * issm/trunk-jpl/src/m/plot/plot_elementstype.m (modified) * issm/trunk-jpl/src/m/plot/plot_highlightelements.m (modified) * issm/trunk-jpl/src/m/plot/plot_highlightvertices.m (modified) * issm/trunk-jpl/src/m/plot/plot_icefront.m (modified) * issm/trunk-jpl/src/m/plot/plot_importancefactors.m (modified) * issm/trunk-jpl/src/m/plot/plot_manager.m (modified) * issm/trunk-jpl/src/m/plot/plot_mesh.m (modified) * issm/trunk-jpl/src/m/plot/plot_none.m (modified) * issm/trunk-jpl/src/m/plot/plot_parthist.m (modified) * issm/trunk-jpl/src/m/plot/plot_parthistn.m (modified) * issm/trunk-jpl/src/m/plot/plot_parthistw.m (modified) * issm/trunk-jpl/src/m/plot/plot_penalties.m (modified) * issm/trunk-jpl/src/m/plot/plot_qmu_mass_flux_segments.m (modified) * issm/trunk-jpl/src/m/plot/plot_qmuhistnorm.m (modified) * issm/trunk-jpl/src/m/plot/plot_qmumean.m (modified) * issm/trunk-jpl/src/m/plot/plot_qmustddev.m (modified) * issm/trunk-jpl/src/m/plot/plot_referential.m (modified) * issm/trunk-jpl/src/m/plot/plot_riftfraction.m (modified) * issm/trunk-jpl/src/m/plot/plot_riftnumbering.m (modified) * issm/trunk-jpl/src/m/plot/plot_riftpenetration.m (modified) * issm/trunk-jpl/src/m/plot/plot_riftrelvel.m (modified) * issm/trunk-jpl/src/m/plot/plot_rifts.m (modified) * issm/trunk-jpl/src/m/plot/plot_riftvel.m (modified) * issm/trunk-jpl/src/m/plot/plot_sarpwr.m (modified) * issm/trunk-jpl/src/m/plot/plot_segments.m (modified) * issm/trunk-jpl/src/m/plot/plot_tensor.m (modified) * issm/trunk-jpl/src/m/plot/plot_tensor_components.m (modified) * issm/trunk-jpl/src/m/plot/plot_tensor_principal.m (modified) * issm/trunk-jpl/src/m/plot/plot_tensor_principalaxis.m (modified) * issm/trunk-jpl/src/m/plot/plot_transient_movie.m (modified) * issm/trunk-jpl/src/m/plot/plot_vertexnumbering.m (modified) * issm/trunk-jpl/src/m/plot/processdata.m (modified) * issm/trunk-jpl/src/m/plot/processmesh.m (modified) * issm/trunk-jpl/src/m/plot/subplotmodel.m (modified) * issm/trunk-jpl/src/m/qmu/MassFluxProcessProfile.m (modified) * issm/trunk-jpl/src/m/qmu/qmumarshall.m (modified) * issm/trunk-jpl/src/m/regional/BasinConstrain.m (modified) * issm/trunk-jpl/src/m/regional/BasinConstrainShelf.m (modified) * issm/trunk-jpl/src/m/solve/MatlabProcessPatch.m (modified) CHG: per matlab's request, removed all unnecessary semicolon Thu, 18 Oct 2012 15:28:57 GMT Mathieu Morlighem [13729] * issm/trunk-jpl/src/m/consistency/ismodelselfconsistent.m (modified) CHG: removed call to verLessThan, taking too long for NR Thu, 18 Oct 2012 15:22:44 GMT Mathieu Morlighem [13728] * issm/trunk-jpl/src/m/solve/waitonlock.m (modified) CHG: use isprop matlab function instead of any(strcmp(properties Thu, 18 Oct 2012 15:20:39 GMT Mathieu Morlighem [13727] * issm/trunk-jpl/src/m/solve/marshall.m (modified) CHG: to improve NR elapsed time, removed call to verLessThan Thu, 18 Oct 2012 15:07:20 GMT Mathieu Morlighem [13726] * issm/trunk-jpl/externalpackages/mpich2/install-1.5-linux64.sh (modified) BUG: forgot cd src before configure Thu, 18 Oct 2012 01:05:16 GMT Mathieu Morlighem [13725] * issm/trunk-jpl/src/m/solve/WriteData.m (modified) * issm/trunk-jpl/src/m/solve/WriteData.py (modified) CHG: use StringToEnum instead of eval (cleaner) Thu, 18 Oct 2012 00:25:26 GMT Mathieu Morlighem [13724] * issm/trunk-jpl/externalpackages/mpich2/install-1.5-linux64.sh (modified) CHG: cleaner install Thu, 18 Oct 2012 00:06:47 GMT Mathieu Morlighem [13723] * issm/trunk-jpl/externalpackages/mpich2/install-1.0.2-altix64.sh (modified) * issm/trunk-jpl/externalpackages/mpich2/install-1.0.2-linux64.sh (modified) * issm/trunk-jpl/externalpackages/mpich2/install-1.0.2-macosx32.sh (modified) * issm/trunk-jpl/externalpackages/mpich2/install-1.0.2-win32.sh (modified) * issm/trunk-jpl/externalpackages/mpich2/install-1.3.1-linux64-berg.sh (modified) * issm/trunk-jpl/externalpackages/mpich2/install-1.4-linux64.sh (modified) * issm/trunk-jpl/externalpackages/mpich2/install-1.4-macosx32.sh (modified) * issm/trunk-jpl/externalpackages/mpich2/install-1.4-macosx64.sh (modified) * issm/trunk-jpl/externalpackages/mpich2/install-1.5-linux64.sh (added) NEW: added install-1.5-linux64.sh for mpich 1.5, which supports ... Wed, 17 Oct 2012 23:44:25 GMT Mathieu Morlighem [13722] * issm/trunk-jpl/src/c/Makefile.am (modified) * issm/trunk-jpl/src/c/classes/FemModel.cpp (modified) * issm/trunk-jpl/src/c/classes/FemModel.h (modified) * issm/trunk-jpl/src/c/modules/MaxAbsVxx (deleted) * issm/trunk-jpl/src/c/modules/MaxAbsVyx (deleted) * issm/trunk-jpl/src/c/modules/MaxAbsVzx (deleted) * issm/trunk-jpl/src/c/modules/MaxVelx (deleted) * issm/trunk-jpl/src/c/modules/MaxVxx (deleted) * issm/trunk-jpl/src/c/modules/MaxVyx (deleted) * issm/trunk-jpl/src/c/modules/MaxVzx (deleted) * issm/trunk-jpl/src/c/modules/modules.h (modified) CHG: moved a bunch of modules to FemModel and fix bug in MassFluxx Wed, 17 Oct 2012 22:59:20 GMT Mathieu Morlighem [13721] * issm/trunk-jpl/src/c/Makefile.am (modified) * issm/trunk-jpl/src/c/classes/FemModel.cpp (modified) * issm/trunk-jpl/src/c/classes/FemModel.h (modified) * issm/trunk-jpl/src/c/modules/MassFluxx (deleted) * issm/trunk-jpl/src/c/modules/modules.h (modified) CHG: moved MassFluxx from modules to FemModel method Wed, 17 Oct 2012 21:51:40 GMT Mathieu Morlighem [13720] * issm/trunk-jpl/test/NightlyRun/runme.py (modified) NEW: for NR, write PYTHONEXITEDCORRECTLY so that report.sh detects ... Wed, 17 Oct 2012 21:31:32 GMT schlegel [13719] * issm/trunk-jpl/src/m/classes/model/model.m (modified) BUG: oops, fixing materials again... Wed, 17 Oct 2012 21:29:08 GMT schlegel [13718] * issm/trunk-jpl/src/m/classes/model/model.m (modified) BUG: revert old materials if statement changed accidentally Wed, 17 Oct 2012 21:25:48 GMT schlegel [13717] * issm/trunk-jpl/src/m/classes/model/model.m (modified) BUG: edges need to have -1 instead of nan, update in old models while ... Wed, 17 Oct 2012 20:53:15 GMT jschierm [13716] * issm/trunk-jpl/src/m/classes/rifts.m (modified) * issm/trunk-jpl/src/m/classes/rifts.py (modified) BUG: Fix case for no rifts (in a more python-like way). Wed, 17 Oct 2012 20:29:15 GMT Mathieu Morlighem [13715] * issm/trunk-jpl/src/m/classes/rifts.py (modified) BUG: do not marshall rifts if numrifts=0 Wed, 17 Oct 2012 20:22:13 GMT Mathieu Morlighem [13714] * issm/trunk-jpl/scripts/report.sh (modified) CHG: change MATLAB_FONT to CODE_FONT Wed, 17 Oct 2012 20:17:56 GMT Mathieu Morlighem [13713] * issm/trunk-jpl/scripts/report.sh (modified) NEW: Added python error report Wed, 17 Oct 2012 17:29:41 GMT jschierm [13712] * issm/trunk-jpl/test/NightlyRun/python_skipped_tests.txt (modified) NEW: Working test216.py and test274.py. Wed, 17 Oct 2012 17:29:17 GMT jschierm [13711] * issm/trunk-jpl/test/NightlyRun/test216.py (moved) * issm/trunk-jpl/test/NightlyRun/test274.py (added) NEW: Working test216.py and test274.py. Wed, 17 Oct 2012 17:28:51 GMT jschierm [13710] * issm/trunk-jpl/src/m/classes/rifts.m (modified) * issm/trunk-jpl/src/m/classes/rifts.py (modified) * issm/trunk-jpl/src/m/mesh/rifts/meshprocessrifts.py (modified) FIX: Fixes to run python rifts (plus a matlab fix as well). Wed, 17 Oct 2012 04:28:33 GMT Eric.Larour [13709] * issm/trunk-jpl/configs/config-arm-linux.sh (modified) * issm/trunk-jpl/m4/issm_options.m4 (modified) * issm/trunk-jpl/src/c/Makefile.am (modified) * issm/trunk-jpl/src/c/android (added) * issm/trunk-jpl/src/c/android/fac.cpp (added) * issm/trunk-jpl/src/c/android/fac.h (added) CHG: new android directory in c/ for android objects. new fac class ... Wed, 17 Oct 2012 04:06:29 GMT Mathieu Morlighem [13708] * issm/trunk-jpl/scripts/report.sh (modified) CHG: remove desks from status Tue, 16 Oct 2012 23:40:02 GMT Eric.Larour [13707] * issm/trunk-jpl/configs/config-linux64-cloud.sh (added) CHG: config to compile on the cloud Tue, 16 Oct 2012 23:39:12 GMT Eric.Larour [13706] * issm/trunk-jpl/externalpackages/cmake (modified) * issm/trunk-jpl/externalpackages/dakota/install-linux64-cloud.sh (added) * issm/trunk-jpl/externalpackages/petsc (modified) * issm/trunk-jpl/externalpackages/petsc/install-dev-linux64.sh (modified) CHG: changes made to compile on the cloud Tue, 16 Oct 2012 23:35:04 GMT Mathieu Morlighem [13705] * issm/trunk-jpl/externalpackages/vim/addons/vim/syntax/c.vim (modified) * issm/trunk-jpl/externalpackages/vim/addons/vimrc (modified) NEW: updated c.vim for C-syntax hilighting Tue, 16 Oct 2012 23:33:06 GMT Mathieu Morlighem [13704] * issm/trunk-jpl/externalpackages/vim/addons/vim/colors/issm_white.vim (modified) simplified issm_white.vim Tue, 16 Oct 2012 23:13:22 GMT Mathieu Morlighem [13703] * issm/trunk-jpl/externalpackages/vim/addons/vim/colors/issm_black.vim (modified) Simplified colors/issm_black.vim Tue, 16 Oct 2012 21:38:45 GMT Mathieu Morlighem [13702] * issm/trunk-jpl/src/c/include/macros.h (modified) BUG: reverted back Tue, 16 Oct 2012 21:37:32 GMT Mathieu Morlighem [13701] * issm/trunk-jpl/src/c/classes/IssmComm.cpp (modified) * issm/trunk-jpl/src/c/include/macros.h (modified) * issm/trunk-jpl/src/c/matlab/include/matlab_macros.h (modified) * issm/trunk-jpl/src/c/matlab/io/PrintfFunction.cpp (deleted) * issm/trunk-jpl/src/c/python/include/python_macros.h (modified) * issm/trunk-jpl/src/c/shared/Exceptions/Exceptions.cpp (modified) * issm/trunk-jpl/src/c/shared/Exceptions/exceptions.h (modified) Better handling of matlab and python errors by putting error message ... Tue, 16 Oct 2012 20:40:42 GMT Eric.Larour [13700] * issm/trunk-jpl/src/c/Makefile.am (modified) * issm/trunk-jpl/src/c/classes/FemModel.cpp (modified) * issm/trunk-jpl/src/c/classes/FemModel.h (modified) * issm/trunk-jpl/src/c/modules/RequestedDependentsx (deleted) * issm/trunk-jpl/src/c/modules/modules.h (modified) * issm/trunk-jpl/src/c/solutions/diagnostic_core.cpp (modified) * issm/trunk-jpl/src/c/solutions/prognostic_core.cpp (modified) * issm/trunk-jpl/src/c/solutions/transient_core.cpp (modified) CHG: moving RequestedDepentsx to FemModel + fixing issues on ADOLC ... Tue, 16 Oct 2012 19:04:31 GMT Eric.Larour [13699] * issm/trunk-jpl/src/c/Makefile.am (modified) * issm/trunk-jpl/src/c/classes/FemModel.cpp (modified) * issm/trunk-jpl/src/c/classes/FemModel.h (modified) * issm/trunk-jpl/src/c/classes/objects/DependentObject.cpp (modified) * issm/trunk-jpl/src/c/classes/objects/DependentObject.h (modified) * issm/trunk-jpl/src/c/modules/CostFunctionx (deleted) * issm/trunk-jpl/src/c/modules/DakotaResponsesx (deleted) * issm/trunk-jpl/src/c/modules/RequestedOutputsx (deleted) * issm/trunk-jpl/src/c/modules/Responsex (deleted) * issm/trunk-jpl/src/c/modules/ThicknessAbsGradientx (deleted) * issm/trunk-jpl/src/c/modules/modules.h (modified) * issm/trunk-jpl/src/c/solutions/DakotaSpawnCore.cpp (modified) * issm/trunk-jpl/src/c/solutions/controltao_core.cpp (modified) * issm/trunk-jpl/src/c/solutions/diagnostic_core.cpp (modified) * issm/trunk-jpl/src/c/solutions/objectivefunction.cpp (modified) * issm/trunk-jpl/src/c/solutions/prognostic_core.cpp (modified) * issm/trunk-jpl/src/c/solutions/steadystate_core.cpp (modified) * issm/trunk-jpl/src/c/solutions/transient_core.cpp (modified) CHG: moved Responsex, ThicknessAbsGradientx, RequestedOutputsx and ...