# # ChangeLog for / # # Generated by Trac 1.4.3 # 05/16/25 21:51:24 Fri, 05 Oct 2012 23:08:28 GMT Eric.Larour [13555] * issm/trunk-jpl/src/c/Makefile.am (modified) * issm/trunk-jpl/src/c/toolkits/mpi/patches/DetermineLocalSize.cpp (modified) * issm/trunk-jpl/src/c/toolkits/mpi/patches/MPI_Boundariesfromrange.cpp (deleted) * issm/trunk-jpl/src/c/toolkits/mpi/patches/MPI_Lowerrow.cpp (deleted) * issm/trunk-jpl/src/c/toolkits/mpi/patches/MPI_Upperrow.cpp (deleted) * issm/trunk-jpl/src/c/toolkits/mpi/patches/mpipatches.h (modified) CHG: MPI_Upperrow, MPI_Boundariesfromrange and MPI_Upperrow not ... Fri, 05 Oct 2012 18:22:30 GMT Eric.Larour [13554] * issm/trunk-jpl/src/c/Makefile.am (modified) * issm/trunk-jpl/src/c/classes/FemModel.cpp (modified) * issm/trunk-jpl/src/c/classes/FemModel.h (modified) * issm/trunk-jpl/src/c/issm.h (modified) * issm/trunk-jpl/src/c/solutions/PrintBanner.cpp (added) * issm/trunk-jpl/src/c/solutions/issm.cpp (modified) * issm/trunk-jpl/src/c/solutions/kriging.cpp (modified) * issm/trunk-jpl/src/c/solutions/solutions.h (modified) CHG: - profiling is now done entirely inside the FemModel methods - ... Fri, 05 Oct 2012 17:24:48 GMT Eric.Larour [13553] * issm/trunk-jpl/src/c/classes/FemModel.cpp (modified) * issm/trunk-jpl/src/c/classes/FemModel.h (modified) * issm/trunk-jpl/src/c/solutions/issm.cpp (modified) CHG: issm.cpp now runs the following methods: Constructor, Solve, and ... Fri, 05 Oct 2012 16:12:56 GMT Eric.Larour [13552] * issm/trunk-jpl/test/Archives/Archive3020.nc (modified) * issm/trunk-jpl/test/NightlyRun/test3015.m (modified) CHG: tighter tolerances, and update on larsen Fri, 05 Oct 2012 15:59:15 GMT Eric.Larour [13551] * issm/trunk-jpl/externalpackages/adolc/install-update-dev.sh (modified) CHG: adapt to changes in git repo Fri, 05 Oct 2012 15:36:40 GMT Eric.Larour [13550] * issm/trunk-jpl/src/c/modules/ModelProcessorx/Autodiff/CreateParametersAutodiff.cpp (modified) CHG: fixed bug. Solver pointers need to be allocated even when ... Fri, 05 Oct 2012 05:13:12 GMT Eric.Larour [13549] * issm/trunk-jpl/src/c/EnumDefinitions/EnumDefinitions.h (modified) * issm/trunk-jpl/src/c/Makefile.am (modified) * issm/trunk-jpl/src/c/classes/FemModel.cpp (modified) * issm/trunk-jpl/src/c/classes/FemModel.h (modified) * issm/trunk-jpl/src/c/io/Disk/WriteLockFile.cpp (moved) * issm/trunk-jpl/src/c/io/Disk/diskio.h (modified) * issm/trunk-jpl/src/c/modules/EnumToStringx/EnumToStringx.cpp (modified) * issm/trunk-jpl/src/c/modules/StringToEnumx/StringToEnumx.cpp (modified) * issm/trunk-jpl/src/c/solutions/issm.cpp (modified) * issm/trunk-jpl/src/m/enum/EnumDefinitions.py (modified) * issm/trunk-jpl/src/m/enum/LockFileNameEnum.m (added) * issm/trunk-jpl/src/m/enum/MaximumNumberOfEnums.m (modified) * issm/trunk-jpl/src/m/enum/OutputfilenameEnum.m (modified) CHG: FemModel constructors and destructors now take care of writing ... Fri, 05 Oct 2012 03:55:38 GMT Mathieu Morlighem [13548] * issm/trunk-jpl/src/c/classes/dakota/DakotaPlugin.cpp (modified) CHG: adding folds Fri, 05 Oct 2012 02:03:34 GMT Eric.Larour [13547] * issm/trunk-jpl/src/c/classes/dakota/DakotaPlugin.cpp (modified) * issm/trunk-jpl/src/c/modules/Dakotax (deleted) * issm/trunk-jpl/src/c/modules/modules.h (modified) CHG: Dakotax.h does not exist anymore. Updated DakotaPlugin and ... Fri, 05 Oct 2012 01:53:57 GMT Eric.Larour [13546] * issm/trunk-jpl/src/c/modules/ModelProcessorx/Autodiff/CreateParametersAutodiff.cpp (modified) * issm/trunk-jpl/src/c/solutions/ad_core.cpp (modified) CHG: shielding CreateParametersAutodiff with HAVE_ADOLC macro. Some ... Fri, 05 Oct 2012 01:25:22 GMT Mathieu Morlighem [13545] * issm/trunk-jpl/src/c/solutions/ad_core.cpp (modified) * issm/trunk-jpl/src/c/solutions/issm.cpp (modified) * issm/trunk-jpl/src/c/solutions/solutions.h (modified) CHG: cosmetics Fri, 05 Oct 2012 01:17:56 GMT Mathieu Morlighem [13544] * issm/trunk-jpl/externalpackages/python/install-2.7.3-macosx-lion.sh (modified) BUG: revert back to original Fri, 05 Oct 2012 01:13:39 GMT Eric.Larour [13543] * issm/trunk-jpl/src/c/solutions/ad_core.cpp (modified) * issm/trunk-jpl/src/c/solutions/issm.cpp (modified) CHG: moved tape statistics printing for AD mode to ad_core from issm.cpp Fri, 05 Oct 2012 01:08:49 GMT Eric.Larour [13542] * issm/trunk-jpl/src/c/modules/ModelProcessorx/Autodiff/CreateParametersAutodiff.cpp (modified) * issm/trunk-jpl/src/c/solutions/issm.cpp (modified) CHG: transferred AD statements to CreateParametersAutodiff, namely ... Fri, 05 Oct 2012 00:59:03 GMT Eric.Larour [13541] * issm/trunk-jpl/src/c/modules/AutodiffDriversx (deleted) CHG: not needed anymore, moved to solutions Fri, 05 Oct 2012 00:58:20 GMT Eric.Larour [13540] * issm/trunk-jpl/externalpackages/python/install-2.7.3-macosx-lion.sh (modified) * issm/trunk-jpl/src/c/Makefile.am (modified) * issm/trunk-jpl/src/c/classes/objects/Profiler.cpp (modified) * issm/trunk-jpl/src/c/classes/objects/Profiler.h (modified) * issm/trunk-jpl/src/c/modules/AutodiffDriversx/AutodiffDriversx.h (deleted) * issm/trunk-jpl/src/c/modules/modules.h (modified) * issm/trunk-jpl/src/c/solutions/CorePointerFromSolutionEnum.cpp (modified) * issm/trunk-jpl/src/c/solutions/DakotaSpawnCore.cpp (modified) * issm/trunk-jpl/src/c/solutions/PureCorePointerFromSolutionEnum.cpp (added) * issm/trunk-jpl/src/c/solutions/ad_core.cpp (moved) * issm/trunk-jpl/src/c/solutions/control_core.cpp (modified) * issm/trunk-jpl/src/c/solutions/controltao_core.cpp (modified) * issm/trunk-jpl/src/c/solutions/dakota_core.cpp (modified) * issm/trunk-jpl/src/c/solutions/issm.cpp (modified) * issm/trunk-jpl/src/c/solutions/solutions.h (modified) CHG: cleanup issm.cpp. Worked on homogeneizing solutioncore returned ... Thu, 04 Oct 2012 23:49:33 GMT Eric.Larour [13539] * issm/trunk-jpl/src/c/Makefile.am (modified) * issm/trunk-jpl/src/c/classes/dakota/DakotaPlugin.cpp (modified) * issm/trunk-jpl/src/c/classes/objects/Profiler.cpp (modified) * issm/trunk-jpl/src/c/classes/objects/Profiler.h (modified) * issm/trunk-jpl/src/c/modules/Dakotax/DakotaFree.cpp (deleted) * issm/trunk-jpl/src/c/modules/Dakotax/DakotaMPI_Bcast.cpp (deleted) * issm/trunk-jpl/src/c/modules/Dakotax/Dakotax.cpp (deleted) * issm/trunk-jpl/src/c/modules/Dakotax/Dakotax.h (modified) * issm/trunk-jpl/src/c/modules/Dakotax/DescriptorIndex.cpp (deleted) * issm/trunk-jpl/src/c/modules/Dakotax/SpawnCore.cpp (deleted) * issm/trunk-jpl/src/c/modules/Dakotax/SpawnCoreParallel.cpp (deleted) * issm/trunk-jpl/src/c/shared/String/sharedstring.h (modified) * issm/trunk-jpl/src/c/shared/shared.h (modified) * issm/trunk-jpl/src/c/solutions/DakotaSpawnCore.cpp (added) * issm/trunk-jpl/src/c/solutions/dakota_core.cpp (added) * issm/trunk-jpl/src/c/solutions/issm.cpp (modified) * issm/trunk-jpl/src/c/solutions/solutions.h (modified) CHG: simplified profiler further. moved Dakotax to ... Thu, 04 Oct 2012 22:33:15 GMT Eric.Larour [13538] * issm/trunk-jpl/src/c/shared/shared.h (modified) CHG: Sys directory not needed anymore Thu, 04 Oct 2012 22:25:52 GMT Eric.Larour [13537] * issm/trunk-jpl/src/c/Makefile.am (modified) CHG: Sys directory not needed anymore Thu, 04 Oct 2012 22:25:24 GMT Eric.Larour [13536] * issm/trunk-jpl/src/c/shared/Sys (deleted) CHG: Not needed anymore Thu, 04 Oct 2012 20:31:17 GMT Eric.Larour [13535] * issm/trunk-jpl/test/NightlyRun/ad_maxalloc.m (added) NEW: test maximum allocation in fov_forward Thu, 04 Oct 2012 19:22:14 GMT Eric.Larour [13534] * issm/trunk-jpl/src/c/EnumDefinitions/EnumDefinitions.h (modified) * issm/trunk-jpl/src/c/Makefile.am (modified) * issm/trunk-jpl/src/c/classes/objects/Profiler.cpp (added) * issm/trunk-jpl/src/c/classes/objects/Profiler.h (added) * issm/trunk-jpl/src/c/classes/objects/objects.h (modified) * issm/trunk-jpl/src/c/modules/EnumToStringx/EnumToStringx.cpp (modified) * issm/trunk-jpl/src/c/modules/StringToEnumx/StringToEnumx.cpp (modified) * issm/trunk-jpl/src/c/solutions/EnvironmentFinalize.cpp (added) * issm/trunk-jpl/src/c/solutions/EnvironmentInit.cpp (modified) * issm/trunk-jpl/src/c/solutions/issm.cpp (modified) * issm/trunk-jpl/src/c/solutions/kriging.cpp (modified) * issm/trunk-jpl/src/c/solutions/solutions.h (modified) * issm/trunk-jpl/src/m/enum/EnumDefinitions.py (modified) * issm/trunk-jpl/src/m/enum/MaximumNumberOfEnums.m (modified) * issm/trunk-jpl/src/m/enum/ProfilerEnum.m (added) * issm/trunk-jpl/src/m/enum/SurfaceforcingsHrefEnum.m (added) * issm/trunk-jpl/src/m/enum/SurfaceforcingsSmbrefEnum.m (added) NEW and CHG: added new enums in src/m/enum. Please run source ... Thu, 04 Oct 2012 18:27:38 GMT Mathieu Morlighem [13533] * issm/trunk-jpl/src/c/solutions/EnvironmentInit.cpp (modified) * issm/trunk-jpl/src/c/solutions/issm.cpp (modified) BUG: fixed petsc initialization (needed to include config.h) Thu, 04 Oct 2012 18:14:42 GMT Eric.Larour [13532] * issm/trunk-jpl/src/c/solutions/EnvironmentInit.cpp (modified) * issm/trunk-jpl/src/c/solutions/issm.cpp (modified) CHG: missing Config.h, which created a problem during issm initialization Thu, 04 Oct 2012 17:42:48 GMT Eric.Larour [13531] * issm/trunk-jpl/src/c/include/macros.h (modified) * issm/trunk-jpl/src/c/solutions/issm.cpp (modified) * issm/trunk-jpl/src/c/solutions/kriging.cpp (modified) CHG: the IssmBoot and IssmEnd have nothing to do with ISSM booting ... Thu, 04 Oct 2012 17:33:59 GMT Eric.Larour [13530] * issm/trunk-jpl/src/c/Makefile.am (modified) * issm/trunk-jpl/src/c/classes/AdolcEdf.h (added) * issm/trunk-jpl/src/c/classes/bamg/BamgGeom.cpp (modified) * issm/trunk-jpl/src/c/classes/bamg/BamgMesh.cpp (modified) * issm/trunk-jpl/src/c/classes/bamg/BamgOpts.cpp (modified) * issm/trunk-jpl/src/c/classes/bamg/BamgQuadtree.cpp (modified) * issm/trunk-jpl/src/c/classes/bamg/BamgVertex.cpp (modified) * issm/trunk-jpl/src/c/classes/bamg/Geometry.cpp (modified) * issm/trunk-jpl/src/c/classes/bamg/ListofIntersectionTriangles.cpp (modified) * issm/trunk-jpl/src/c/classes/bamg/Mesh.cpp (modified) * issm/trunk-jpl/src/c/classes/bamg/SetOfE4.cpp (modified) * issm/trunk-jpl/src/c/classes/bamg/Triangle.cpp (modified) * issm/trunk-jpl/src/c/classes/classes.h (modified) * issm/trunk-jpl/src/c/classes/kriging/ExponentialVariogram.cpp (modified) * issm/trunk-jpl/src/c/classes/kriging/GaussianVariogram.cpp (modified) * issm/trunk-jpl/src/c/classes/kriging/Observation.cpp (modified) * issm/trunk-jpl/src/c/classes/kriging/PowerVariogram.cpp (modified) * issm/trunk-jpl/src/c/classes/kriging/Quadtree.cpp (modified) * issm/trunk-jpl/src/c/classes/kriging/SphericalVariogram.cpp (modified) * issm/trunk-jpl/src/c/classes/objects.h (deleted) * issm/trunk-jpl/src/c/include/macros.h (modified) * issm/trunk-jpl/src/c/modules/AutodiffDriversx/AutodiffDriversx.cpp (modified) * issm/trunk-jpl/src/c/modules/Solverx/SolverxSeq.cpp (modified) * issm/trunk-jpl/src/c/shared/Numerics/adolc_edf.h (deleted) * issm/trunk-jpl/src/c/solutions/EnvironmentInit.cpp (added) * issm/trunk-jpl/src/c/solutions/issm.cpp (modified) * issm/trunk-jpl/src/c/solutions/kriging.cpp (modified) * issm/trunk-jpl/src/c/solutions/solutions.h (modified) CHG and NEW: macros.h: changed name of ISSMBOOT and ISSMEND macros ... Thu, 04 Oct 2012 16:07:07 GMT helsen [13529] * issm/trunk-jpl/test/NightlyRun/test328.m (modified) * issm/trunk-jpl/test/NightlyRun/test329.m (modified) modified Nightlyruntest for SMB gradients Thu, 04 Oct 2012 03:58:05 GMT Mathieu Morlighem [13528] * issm/trunk-jpl/src/c/classes/objects/Elements/Penta.cpp (modified) BUG: reverted back to original regularization Wed, 03 Oct 2012 23:59:34 GMT ltnguyen [13527] * issm/trunk-jpl/src/android/helloworld/HelloWorldJNI (added) * issm/trunk-jpl/src/android/helloworld/HelloWorldJNI/CLibHelloWorld.dll (added) * issm/trunk-jpl/src/android/helloworld/HelloWorldJNI/HelloWorld.class (added) * issm/trunk-jpl/src/android/helloworld/HelloWorldJNI/HelloWorld.cpp (added) * issm/trunk-jpl/src/android/helloworld/HelloWorldJNI/HelloWorld.h (added) * issm/trunk-jpl/src/android/helloworld/HelloWorldJNI/HelloWorld.java (added) * issm/trunk-jpl/src/android/helloworld/HelloWorldJNI/Main.class (added) * issm/trunk-jpl/src/android/helloworld/HelloWorldJNI/Main.java (added) * issm/trunk-jpl/src/android/helloworld/HelloWorldJNI/Results.jpg (added) This is a simple HelloWorld that using JNI Header, this is working ... Wed, 03 Oct 2012 23:55:49 GMT bduong [13526] * issm/trunk-jpl/src/android/helloworld/Google Play Store App Release Tutorial.rtf (added) Process to release an android app on Google Play Store Wed, 03 Oct 2012 22:56:53 GMT jschierm [13525] * issm/trunk-jpl/test/NightlyRun/test217.py (moved) NEW: Working test217.py. Wed, 03 Oct 2012 22:05:41 GMT jschierm [13524] * issm/trunk-jpl/src/m/mesh/ElementsFromEdge.m (modified) * issm/trunk-jpl/src/m/mesh/ElementsFromEdge.py (added) * issm/trunk-jpl/src/m/mesh/rifts/meshprocessoutsiderifts.m (modified) * issm/trunk-jpl/src/m/mesh/rifts/meshprocessoutsiderifts.py (added) * issm/trunk-jpl/src/m/mesh/rifts/meshprocessrifts.py (added) NEW: Preliminary python versions of some rift functions (not useful ... Wed, 03 Oct 2012 21:24:13 GMT Mathieu Morlighem [13523] * issm/trunk-jpl/src/m/enum/EnumDefinitions.py (modified) * issm/trunk-jpl/src/m/enum/MaximumNumberOfEnums.m (modified) BUG: fixing number of Enum Wed, 03 Oct 2012 21:17:01 GMT Eric.Larour [13522] * issm/trunk-jpl/src/android/helloworld (added) NEW: helloworld prototype directory Wed, 03 Oct 2012 18:51:45 GMT helsen [13521] * issm/trunk-jpl/src/c/EnumDefinitions/EnumDefinitions.h (modified) * issm/trunk-jpl/src/c/classes/objects/Elements/Penta.cpp (modified) * issm/trunk-jpl/src/c/classes/objects/Elements/Tria.cpp (modified) * issm/trunk-jpl/src/c/modules/EnumToStringx/EnumToStringx.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/Prognostic/UpdateElementsPrognostic.cpp (modified) * issm/trunk-jpl/src/c/modules/StringToEnumx/StringToEnumx.cpp (modified) * issm/trunk-jpl/src/c/shared/Numerics/UnitConversion.cpp (modified) * issm/trunk-jpl/src/m/classes/surfaceforcings.m (modified) update of the SMB gradients code Wed, 03 Oct 2012 17:38:28 GMT jschierm [13520] * issm/trunk-jpl/src/m/mesh/triangle.py (modified) FIX: Fix handling of variable arguments (and more). Wed, 03 Oct 2012 16:51:31 GMT jschierm [13519] * issm/trunk-jpl/test/NightlyRun/test212.py (modified) * issm/trunk-jpl/test/NightlyRun/test213.py (moved) * issm/trunk-jpl/test/NightlyRun/test214.m (modified) * issm/trunk-jpl/test/NightlyRun/test214.py (moved) * issm/trunk-jpl/test/NightlyRun/test215.m (modified) * issm/trunk-jpl/test/NightlyRun/test215.py (moved) NEW: Working python tests 213-215. Wed, 03 Oct 2012 16:36:29 GMT jschierm [13518] * issm/trunk-jpl/test/NightlyRun/test212.m (modified) * issm/trunk-jpl/test/NightlyRun/test212.py (moved) NEW: Working test212.py. Wed, 03 Oct 2012 16:36:01 GMT jschierm [13517] * issm/trunk-jpl/src/m/classes/inversion.py (modified) FIX: Fixed InversionControlParameters for test212.py. Wed, 03 Oct 2012 16:09:23 GMT Eric.Larour [13516] * issm/trunk-jpl/configs/config-macosx64-larour-bothapis.sh (modified) * issm/trunk-jpl/externalpackages/esmf/esmf_4_0_0rp2_src.tar.gz (added) * issm/trunk-jpl/src/c/EnumDefinitions/EnumDefinitions.h (modified) * issm/trunk-jpl/src/c/classes/IoModel.cpp (modified) * issm/trunk-jpl/src/c/modules/EnumToStringx/EnumToStringx.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/Autodiff/CreateParametersAutodiff.cpp (modified) * issm/trunk-jpl/src/c/modules/StringToEnumx/StringToEnumx.cpp (modified) * issm/trunk-jpl/src/m/classes/autodiff.m (modified) * issm/trunk-jpl/src/m/classes/autodiff.py (modified) * issm/trunk-jpl/src/m/enum/AutodiffKeepEnum.m (added) * issm/trunk-jpl/src/m/enum/EnumDefinitions.py (modified) * issm/trunk-jpl/src/m/enum/MaximumNumberOfEnums.m (modified) * issm/trunk-jpl/test/Archives/Archive3020.nc (added) * issm/trunk-jpl/test/NightlyRun/test3019.m (modified) * issm/trunk-jpl/test/NightlyRun/test3020.m (added) CHG: modified the way we set keep for trace initialization in AD ... Wed, 03 Oct 2012 14:50:46 GMT utke [13515] * issm/trunk-jpl/src/c/modules/Solverx/SolverxSeq.cpp (modified) CHG consistent naming Wed, 03 Oct 2012 14:43:39 GMT utke [13514] * issm/trunk-jpl/src/c/modules/Solverx/SolverxSeq.cpp (modified) CHG indentation only - abide by the ISSM code style Wed, 03 Oct 2012 14:41:55 GMT utke [13513] * issm/trunk-jpl/src/c/modules/AutodiffDriversx/AutodiffDriversx.cpp (modified) NEW fov_reverse driver Wed, 03 Oct 2012 14:36:50 GMT utke [13512] * issm/trunk-jpl/src/c/modules/Solverx/SolverxSeq.cpp (modified) NEW fov_reverse solver wrapper Tue, 02 Oct 2012 23:37:09 GMT Eric.Larour [13511] * issm/trunk-jpl/execution (modified) CHG: get svn to ignore some svn files Tue, 02 Oct 2012 23:37:00 GMT Eric.Larour [13510] * issm/trunk-jpl/execution (modified) CHG: get svn to ignore some svn files Tue, 02 Oct 2012 23:33:22 GMT Eric.Larour [13509] * issm/trunk-jpl/src/c/modules/ModelProcessorx/Autodiff/CreateParametersAutodiff.cpp (modified) * issm/trunk-jpl/src/m/classes/autodiff.m (modified) * issm/trunk-jpl/src/m/classes/dependent.m (modified) NEW: new fos_reverse driver capability. Tue, 02 Oct 2012 23:26:58 GMT Eric.Larour [13508] * issm/trunk-jpl/test/Archives/Archive3019.nc (added) * issm/trunk-jpl/test/NightlyRun/ad.m (modified) * issm/trunk-jpl/test/NightlyRun/test3019.m (added) NEW: test to check forward vectorial vs reverse scalar Tue, 02 Oct 2012 22:43:10 GMT utke [13507] * issm/trunk-jpl/src/c/modules/AutodiffDriversx/AutodiffDriversx.cpp (modified) CHG factored out EDF allocations, changed driver names, added ... Tue, 02 Oct 2012 22:35:53 GMT Eric.Larour [13506] * issm/trunk-jpl/src/c/modules/EnumToStringx/EnumToStringx.cpp (modified) * issm/trunk-jpl/src/c/modules/StringToEnumx/StringToEnumx.cpp (modified) CHG: new AutodiffFosReverseIndexEnum for reverse mode. Also changed ... Tue, 02 Oct 2012 22:35:24 GMT Eric.Larour [13505] * issm/trunk-jpl/src/c/EnumDefinitions/EnumDefinitions.h (modified) * issm/trunk-jpl/src/c/classes/IoModel.cpp (modified) * issm/trunk-jpl/src/m/classes/autodiff.m (modified) * issm/trunk-jpl/src/m/enum/AutodiffFosReverseIndexEnum.m (added) * issm/trunk-jpl/src/m/enum/EnumDefinitions.py (modified) * issm/trunk-jpl/src/m/enum/MaximumNumberOfEnums.m (modified) CHG: new AutodiffFosReverseIndexEnum for reverse mode. Also changed ... Tue, 02 Oct 2012 21:46:18 GMT jschierm [13504] * issm/trunk-jpl/test/NightlyRun/test205.py (moved) NEW: Working test205.py. Tue, 02 Oct 2012 21:44:46 GMT jschierm [13503] * issm/trunk-jpl/src/m/geometry/FlagElements.py (modified) * issm/trunk-jpl/src/m/geometry/SegIntersect.py (modified) * issm/trunk-jpl/src/m/parameterization/setflowequation.py (modified) FIX: Fixes required for test205.py. Tue, 02 Oct 2012 21:29:43 GMT utke [13502] * issm/trunk-jpl/src/c/solutions/issm.cpp (modified) CHG space savers for EDF Tue, 02 Oct 2012 21:15:21 GMT Eric.Larour [13501] * issm/trunk-jpl/src/c/classes/IoModel.cpp (modified) CHG: active keep on in trace for reverse drivers Tue, 02 Oct 2012 21:14:59 GMT Eric.Larour [13500] * issm/trunk-jpl/src/m/classes/autodiff.m (modified) CHG: checkconsistency now accepts reverse drivers Tue, 02 Oct 2012 21:14:37 GMT Eric.Larour [13499] * issm/trunk-jpl/src/c/modules/AutodiffDriversx/AutodiffDriversx.cpp (modified) CHG: problem with driver name Tue, 02 Oct 2012 21:13:50 GMT utke [13498] * issm/trunk-jpl/src/c/modules/Solverx/SolverxSeq.cpp (modified) CHG implement fos_reverse for the solver and use a view to the ... Mon, 01 Oct 2012 23:25:09 GMT helsen [13497] * issm/trunk-jpl/externalpackages/petsc/install-3.2-greenplanet.sh (modified) CHG: enable shared libraries Mon, 01 Oct 2012 19:09:25 GMT jschierm [13496] * issm/trunk-jpl/src/m/mesh/bamg.py (modified) CHG: cosmetic. Mon, 01 Oct 2012 19:06:53 GMT jschierm [13495] * issm/trunk-jpl/src/m/mesh/bamg.m (modified) * issm/trunk-jpl/src/m/mesh/bamg.py (modified) NEW: Preliminary rifts section of bamg.py. Mon, 01 Oct 2012 17:13:02 GMT jschierm [13494] * issm/trunk-jpl/test/NightlyRun/test514.m (modified) * issm/trunk-jpl/test/NightlyRun/test514.py (added) NEW: test514.py now running. Mon, 01 Oct 2012 17:09:13 GMT jschierm [13493] * issm/trunk-jpl/src/m/mesh/bamg.py (modified) FIX: Fixed typo and instance dictionary reference. Mon, 01 Oct 2012 03:31:54 GMT mikep [13492] * issm/trunk-jpl/test/NightlyRun/InNeedOfDebugging (added) * issm/trunk-jpl/test/NightlyRun/InNeedOfDebugging/test1301.py (added) * issm/trunk-jpl/test/NightlyRun/InNeedOfDebugging/test1302.py (added) * issm/trunk-jpl/test/NightlyRun/InNeedOfDebugging/test1303.py (added) * issm/trunk-jpl/test/NightlyRun/InNeedOfDebugging/test1304.py (added) * issm/trunk-jpl/test/NightlyRun/InNeedOfDebugging/test1501.py (added) * issm/trunk-jpl/test/NightlyRun/InNeedOfDebugging/test1502.py (added) * issm/trunk-jpl/test/NightlyRun/InNeedOfDebugging/test1601.py (added) * issm/trunk-jpl/test/NightlyRun/InNeedOfDebugging/test1602.py (added) * issm/trunk-jpl/test/NightlyRun/InNeedOfDebugging/test205.py (added) * issm/trunk-jpl/test/NightlyRun/InNeedOfDebugging/test212.py (added) * issm/trunk-jpl/test/NightlyRun/InNeedOfDebugging/test213.py (added) * issm/trunk-jpl/test/NightlyRun/InNeedOfDebugging/test214.py (added) * issm/trunk-jpl/test/NightlyRun/InNeedOfDebugging/test215.py (added) * issm/trunk-jpl/test/NightlyRun/InNeedOfDebugging/test216.py (added) * issm/trunk-jpl/test/NightlyRun/InNeedOfDebugging/test217.py (added) * issm/trunk-jpl/test/NightlyRun/InNeedOfDebugging/test218.py (added) * issm/trunk-jpl/test/NightlyRun/InNeedOfDebugging/test219.py (added) * issm/trunk-jpl/test/NightlyRun/InNeedOfDebugging/test220.py (added) * issm/trunk-jpl/test/NightlyRun/InNeedOfDebugging/test3001.py (added) * issm/trunk-jpl/test/NightlyRun/InNeedOfDebugging/test3002.py (added) * issm/trunk-jpl/test/NightlyRun/InNeedOfDebugging/test3003.py (added) * issm/trunk-jpl/test/NightlyRun/InNeedOfDebugging/test3004.py (added) * issm/trunk-jpl/test/NightlyRun/InNeedOfDebugging/test3005.py (added) * issm/trunk-jpl/test/NightlyRun/InNeedOfDebugging/test3006.py (added) * issm/trunk-jpl/test/NightlyRun/InNeedOfDebugging/test3007.py (added) * issm/trunk-jpl/test/NightlyRun/InNeedOfDebugging/test3008.py (added) * issm/trunk-jpl/test/NightlyRun/InNeedOfDebugging/test3009.py (added) * issm/trunk-jpl/test/NightlyRun/InNeedOfDebugging/test3010.py (added) These are scripts that were in my queue to debug - ran out of time Mon, 01 Oct 2012 03:21:22 GMT mikep [13491] * issm/trunk-jpl/scripts/translateToPy.py (modified) * issm/trunk-jpl/test/NightlyRun/test202.py (added) * issm/trunk-jpl/test/NightlyRun/test203.py (added) * issm/trunk-jpl/test/NightlyRun/test204.py (added) * issm/trunk-jpl/test/NightlyRun/test206.py (added) * issm/trunk-jpl/test/NightlyRun/test207.py (added) * issm/trunk-jpl/test/NightlyRun/test208.py (added) * issm/trunk-jpl/test/NightlyRun/test209.py (added) * issm/trunk-jpl/test/NightlyRun/test210.py (added) * issm/trunk-jpl/test/NightlyRun/test211.py (added) Checkin last py scripts I was able to test successfully. Sat, 29 Sep 2012 18:31:11 GMT Eric.Larour [13490] * issm/trunk-jpl/src/m/classes/autodiff.py (modified) * issm/trunk-jpl/src/m/classes/qmu.py (modified) CHG: updated these classes to sync with corresponding .m classes Sat, 29 Sep 2012 04:47:48 GMT Eric.Larour [13489] * issm/trunk-jpl/externalpackages/adolc/update.sh (added) NEW: update of adolc clone. Sat, 29 Sep 2012 04:47:23 GMT Eric.Larour [13488] * issm/trunk-jpl/configs/config-linux64-murdo-ad.sh (modified) * issm/trunk-jpl/configs/config-linux64-murdo.sh (modified) CHG: updates to murdo configurations Sat, 29 Sep 2012 04:46:35 GMT Eric.Larour [13487] * issm/trunk-jpl/etc/environment.sh (modified) CHG: swithc from append to prepend on git variables Sat, 29 Sep 2012 04:17:31 GMT Eric.Larour [13486] * issm/trunk-jpl/src/c/EnumDefinitions/EnumDefinitions.h (modified) * issm/trunk-jpl/src/c/modules/EnumToStringx/EnumToStringx.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/CreateParameters.cpp (modified) * issm/trunk-jpl/src/c/modules/StringToEnumx/StringToEnumx.cpp (modified) * issm/trunk-jpl/src/m/classes/autodiff.m (modified) * issm/trunk-jpl/src/m/classes/qmu.m (modified) * issm/trunk-jpl/src/m/enum/AutodiffMassFluxSegmentsPresentEnum.m (added) * issm/trunk-jpl/src/m/enum/EnumDefinitions.py (modified) * issm/trunk-jpl/src/m/enum/MaximumNumberOfEnums.m (modified) * issm/trunk-jpl/src/m/enum/QmuMassFluxSegmentsPresentEnum.m (added) * issm/trunk-jpl/test/NightlyRun/test223.m (modified) CHG: fixed issues with mass flux segments where ... Sat, 29 Sep 2012 03:44:09 GMT Mathieu Morlighem [13485] * issm/trunk-jpl/src/c/modules/ModelProcessorx/CreateParameters.cpp (modified) BUG: do not check for segment if isautodiff=false Sat, 29 Sep 2012 00:33:52 GMT jschierm [13484] * issm/trunk-jpl/src/c/python/io/FetchPythonData.cpp (modified) * issm/trunk-jpl/src/m/classes/bamggeom.py (modified) CHG: Change handling of null matrices for python FetchData. Sat, 29 Sep 2012 00:21:21 GMT Eric.Larour [13483] * issm/trunk-jpl/src/c/EnumDefinitions/EnumDefinitions.h (modified) * issm/trunk-jpl/src/c/classes/objects/DependentObject.cpp (modified) * issm/trunk-jpl/src/c/classes/objects/DependentObject.h (modified) * issm/trunk-jpl/src/c/modules/EnumToStringx/EnumToStringx.cpp (modified) * issm/trunk-jpl/src/c/modules/MassFluxx/MassFluxx.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/Autodiff/CreateParametersAutodiff.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/CreateParameters.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/Dakota/CreateParametersDakota.cpp (modified) * issm/trunk-jpl/src/c/modules/RequestedDependentsx/RequestedDependentsx.cpp (modified) * issm/trunk-jpl/src/c/modules/StringToEnumx/StringToEnumx.cpp (modified) * issm/trunk-jpl/src/m/classes/autodiff.m (modified) * issm/trunk-jpl/src/m/classes/dependent.m (modified) * issm/trunk-jpl/src/m/classes/qmu.m (modified) * issm/trunk-jpl/src/m/enum/AutodiffDependentObjectIndicesEnum.m (added) * issm/trunk-jpl/src/m/enum/EnumDefinitions.py (modified) * issm/trunk-jpl/src/m/enum/MassFluxSegmentsEnum.m (added) * issm/trunk-jpl/src/m/enum/MassFluxSegmentsPresentEnum.m (added) * issm/trunk-jpl/src/m/enum/MaximumNumberOfEnums.m (modified) * issm/trunk-jpl/src/m/enum/QmuMassFluxSegmentsEnum.m (deleted) * issm/trunk-jpl/test/NightlyRun/ad.m (modified) CHG: added mass flux as a possible dependent variable. In order not ... Fri, 28 Sep 2012 23:04:47 GMT jschierm [13482] * issm/trunk-jpl/src/m/mesh/ComputeHessian.m (modified) * issm/trunk-jpl/src/m/mesh/ComputeHessian.py (added) * issm/trunk-jpl/src/m/mesh/ComputeMetric.m (modified) * issm/trunk-jpl/src/m/mesh/ComputeMetric.py (added) * issm/trunk-jpl/src/m/mesh/GetNodalFunctionsCoeff.py (modified) * issm/trunk-jpl/src/m/mesh/bamg.py (modified) * issm/trunk-jpl/src/m/miscellaneous/MatlabFuncs.py (modified) NEW: New python functions in support of test514.py (which doesn't yet ... Fri, 28 Sep 2012 22:54:30 GMT utke [13481] * issm/trunk-jpl/src/c/modules/Solverx/SolverxSeq.cpp (modified) CHG just changed the signature in adol-c so need to mirror it here Fri, 28 Sep 2012 22:47:38 GMT bduong [13480] * issm/trunk-jpl/src/modules/matlab/Makefile.am (modified) CHG: Changed ordering of LD flags. Fri, 28 Sep 2012 21:28:41 GMT cborstad [13479] * issm/trunk-jpl/src/m/mech/mechanicalproperties.m (modified) CHG: handle matice and matdamageice separately when calculating viscosity Fri, 28 Sep 2012 21:12:33 GMT bduong [13478] * issm/trunk-jpl/m4/issm_options.m4 (modified) BUG: Missing semicolon on prior modification to 'issm_options.m4' Fri, 28 Sep 2012 21:03:55 GMT bduong [13477] * issm/trunk-jpl/m4/issm_options.m4 (modified) CHG: ISSM now recognizes R2012b Matlab version. Fri, 28 Sep 2012 20:33:15 GMT cborstad [13476] * issm/trunk-jpl/src/m/mech/mechanicalproperties.m (modified) CHG: changed mechanicalproperties to sort eigenvalues in descending ... Fri, 28 Sep 2012 18:24:23 GMT Eric.Larour [13475] * issm/trunk-jpl/execution (modified) CHG: get svn to ignore some svn files Fri, 28 Sep 2012 02:01:02 GMT Eric.Larour [13474] * issm/trunk-jpl/externalpackages/adolc (modified) CHG: get svn to ignore some files Fri, 28 Sep 2012 01:59:50 GMT Eric.Larour [13473] * issm/trunk-jpl/test/NightlyRun/ad.m (modified) CHG: good test for AD Thu, 27 Sep 2012 22:40:18 GMT jschierm [13472] * issm/trunk-jpl/src/m/geometry/GetAreas.py (added) * issm/trunk-jpl/src/m/mesh/GetNodalFunctionsCoeff.py (added) NEW: Preliminary python versions of GetAreas and GetNodalFunctionsCoeff. Thu, 27 Sep 2012 21:51:11 GMT jschierm [13471] * issm/trunk-jpl/test/Par/Pig.py (modified) NEW: Enable SetMarineIceSheetBC in Pig.py. Thu, 27 Sep 2012 21:46:49 GMT jschierm [13470] * issm/trunk-jpl/src/m/boundaryconditions/SetIceShelfBC.py (modified) * issm/trunk-jpl/src/m/boundaryconditions/SetMarineIceSheetBC.m (modified) * issm/trunk-jpl/src/m/boundaryconditions/SetMarineIceSheetBC.py (added) * issm/trunk-jpl/src/m/classes/model/model.py (modified) * issm/trunk-jpl/src/m/geometry/FlagElements.py (modified) * issm/trunk-jpl/src/m/mesh/bamg.py (modified) CHG: More changes relating to python 1-d vectors vs. 2-d arrays (plus ... Thu, 27 Sep 2012 20:52:04 GMT Eric.Larour [13469] * issm/trunk-jpl/src/m/classes/prognostic.py (modified) CHG: fixed bug in requested_outputs check consistency Thu, 27 Sep 2012 18:23:20 GMT utke [13468] * issm/trunk-jpl/src/c/modules/AutodiffDriversx/AutodiffDriversx.cpp (modified) CHG ignore the return codes for now Thu, 27 Sep 2012 18:00:28 GMT jschierm [13467] * issm/trunk-jpl/src/m/boundaryconditions/SetIceShelfBC.py (modified) FIX: Fixed call to ContourToMesh. Thu, 27 Sep 2012 17:51:08 GMT jschierm [13466] * issm/trunk-jpl/test/Par/SquareShelf.py (modified) CHG: Update for multiple columns. Thu, 27 Sep 2012 17:46:27 GMT mikep [13465] * issm/trunk-jpl/src/m/boundaryconditions/SetIceShelfBC.py (modified) * issm/trunk-jpl/test/Par/SquareShelf.py (modified) minor cleanup Thu, 27 Sep 2012 17:15:23 GMT Mathieu Morlighem [13464] * issm/trunk-jpl/src/modules/python/Makefile.am (modified) BUG: do not compile ContourToMesh twice Thu, 27 Sep 2012 16:48:29 GMT jschierm [13463] * issm/trunk-jpl/test/NightlyRun/test121.py (modified) * issm/trunk-jpl/test/NightlyRun/test122.py (modified) * issm/trunk-jpl/test/Par/Pig.py (added) * issm/trunk-jpl/test/Par/SquareShelfConstrained.py (modified) CHG: Changed all data 1-d vectors to 2-d arrays to allow multiple ... Thu, 27 Sep 2012 16:44:58 GMT jschierm [13462] * issm/trunk-jpl/src/m/boundaryconditions/SetIceShelfBC.py (modified) * issm/trunk-jpl/src/m/classes/model/model.py (modified) * issm/trunk-jpl/src/m/classes/thermal.py (modified) * issm/trunk-jpl/src/m/materials/paterson.m (modified) * issm/trunk-jpl/src/m/materials/paterson.py (modified) * issm/trunk-jpl/src/m/parameterization/setflowequation.py (modified) * issm/trunk-jpl/src/m/solve/parseresultsfromdisk.py (modified) CHG: Changed all data 1-d vectors to 2-d arrays to allow multiple ... Thu, 27 Sep 2012 16:26:29 GMT Eric.Larour [13461] * issm/trunk-jpl/src/c/EnumDefinitions/EnumDefinitions.h (modified) * issm/trunk-jpl/src/c/modules/AutodiffDriversx/AutodiffDriversx.cpp (modified) * issm/trunk-jpl/src/c/modules/EnumToStringx/EnumToStringx.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/Autodiff/CreateParametersAutodiff.cpp (modified) * issm/trunk-jpl/src/c/modules/StringToEnumx/StringToEnumx.cpp (modified) * issm/trunk-jpl/src/m/classes/autodiff.m (modified) * issm/trunk-jpl/src/m/classes/independent.m (modified) * issm/trunk-jpl/src/m/enum/AutodiffFovForwardIndicesEnum.m (added) * issm/trunk-jpl/src/m/enum/EnumDefinitions.py (modified) * issm/trunk-jpl/src/m/enum/MaximumNumberOfEnums.m (modified) * issm/trunk-jpl/test/NightlyRun/ad.m (modified) CHG: AutodiffDriversx now driven by the type of driver string ... Thu, 27 Sep 2012 13:41:37 GMT jschierm [13460] * issm/trunk-jpl/test/NightlyRun/runme.py (modified) CHG: Take advantage of python syntax. Thu, 27 Sep 2012 05:44:12 GMT utke [13459] * issm/trunk-jpl/src/c/shared/Alloc/xNewDelete.h (modified) CHG fix the operator order with () Thu, 27 Sep 2012 05:28:00 GMT utke [13458] * issm/trunk-jpl/src/c/modules/AutodiffDriversx/AutodiffDriversx.cpp (modified) CHG fix wrong condition Thu, 27 Sep 2012 03:04:17 GMT Eric.Larour [13457] * issm/trunk-jpl/src/c/modules/AutodiffDriversx/AutodiffDriversx.cpp (modified) CHG: minor Thu, 27 Sep 2012 02:20:29 GMT Mathieu Morlighem [13456] * issm/trunk-jpl/test/NightlyRun/runme.py (modified) BUG: fix python NR, do not stop if failure