# # ChangeLog for / # # Generated by Trac 1.4.3 # 05/17/25 06:27:48 Wed, 03 Oct 2012 16:51:31 GMT jschierm [13519] * issm/trunk-jpl/test/NightlyRun/test212.py (modified) * issm/trunk-jpl/test/NightlyRun/test213.py (moved) * issm/trunk-jpl/test/NightlyRun/test214.m (modified) * issm/trunk-jpl/test/NightlyRun/test214.py (moved) * issm/trunk-jpl/test/NightlyRun/test215.m (modified) * issm/trunk-jpl/test/NightlyRun/test215.py (moved) NEW: Working python tests 213-215. Wed, 03 Oct 2012 16:36:29 GMT jschierm [13518] * issm/trunk-jpl/test/NightlyRun/test212.m (modified) * issm/trunk-jpl/test/NightlyRun/test212.py (moved) NEW: Working test212.py. Wed, 03 Oct 2012 16:36:01 GMT jschierm [13517] * issm/trunk-jpl/src/m/classes/inversion.py (modified) FIX: Fixed InversionControlParameters for test212.py. Wed, 03 Oct 2012 16:09:23 GMT Eric.Larour [13516] * issm/trunk-jpl/configs/config-macosx64-larour-bothapis.sh (modified) * issm/trunk-jpl/externalpackages/esmf/esmf_4_0_0rp2_src.tar.gz (added) * issm/trunk-jpl/src/c/EnumDefinitions/EnumDefinitions.h (modified) * issm/trunk-jpl/src/c/classes/IoModel.cpp (modified) * issm/trunk-jpl/src/c/modules/EnumToStringx/EnumToStringx.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/Autodiff/CreateParametersAutodiff.cpp (modified) * issm/trunk-jpl/src/c/modules/StringToEnumx/StringToEnumx.cpp (modified) * issm/trunk-jpl/src/m/classes/autodiff.m (modified) * issm/trunk-jpl/src/m/classes/autodiff.py (modified) * issm/trunk-jpl/src/m/enum/AutodiffKeepEnum.m (added) * issm/trunk-jpl/src/m/enum/EnumDefinitions.py (modified) * issm/trunk-jpl/src/m/enum/MaximumNumberOfEnums.m (modified) * issm/trunk-jpl/test/Archives/Archive3020.nc (added) * issm/trunk-jpl/test/NightlyRun/test3019.m (modified) * issm/trunk-jpl/test/NightlyRun/test3020.m (added) CHG: modified the way we set keep for trace initialization in AD ... Wed, 03 Oct 2012 14:50:46 GMT utke [13515] * issm/trunk-jpl/src/c/modules/Solverx/SolverxSeq.cpp (modified) CHG consistent naming Wed, 03 Oct 2012 14:43:39 GMT utke [13514] * issm/trunk-jpl/src/c/modules/Solverx/SolverxSeq.cpp (modified) CHG indentation only - abide by the ISSM code style Wed, 03 Oct 2012 14:41:55 GMT utke [13513] * issm/trunk-jpl/src/c/modules/AutodiffDriversx/AutodiffDriversx.cpp (modified) NEW fov_reverse driver Wed, 03 Oct 2012 14:36:50 GMT utke [13512] * issm/trunk-jpl/src/c/modules/Solverx/SolverxSeq.cpp (modified) NEW fov_reverse solver wrapper Tue, 02 Oct 2012 23:37:09 GMT Eric.Larour [13511] * issm/trunk-jpl/execution (modified) CHG: get svn to ignore some svn files Tue, 02 Oct 2012 23:37:00 GMT Eric.Larour [13510] * issm/trunk-jpl/execution (modified) CHG: get svn to ignore some svn files Tue, 02 Oct 2012 23:33:22 GMT Eric.Larour [13509] * issm/trunk-jpl/src/c/modules/ModelProcessorx/Autodiff/CreateParametersAutodiff.cpp (modified) * issm/trunk-jpl/src/m/classes/autodiff.m (modified) * issm/trunk-jpl/src/m/classes/dependent.m (modified) NEW: new fos_reverse driver capability. Tue, 02 Oct 2012 23:26:58 GMT Eric.Larour [13508] * issm/trunk-jpl/test/Archives/Archive3019.nc (added) * issm/trunk-jpl/test/NightlyRun/ad.m (modified) * issm/trunk-jpl/test/NightlyRun/test3019.m (added) NEW: test to check forward vectorial vs reverse scalar Tue, 02 Oct 2012 22:43:10 GMT utke [13507] * issm/trunk-jpl/src/c/modules/AutodiffDriversx/AutodiffDriversx.cpp (modified) CHG factored out EDF allocations, changed driver names, added ... Tue, 02 Oct 2012 22:35:53 GMT Eric.Larour [13506] * issm/trunk-jpl/src/c/modules/EnumToStringx/EnumToStringx.cpp (modified) * issm/trunk-jpl/src/c/modules/StringToEnumx/StringToEnumx.cpp (modified) CHG: new AutodiffFosReverseIndexEnum for reverse mode. Also changed ... Tue, 02 Oct 2012 22:35:24 GMT Eric.Larour [13505] * issm/trunk-jpl/src/c/EnumDefinitions/EnumDefinitions.h (modified) * issm/trunk-jpl/src/c/classes/IoModel.cpp (modified) * issm/trunk-jpl/src/m/classes/autodiff.m (modified) * issm/trunk-jpl/src/m/enum/AutodiffFosReverseIndexEnum.m (added) * issm/trunk-jpl/src/m/enum/EnumDefinitions.py (modified) * issm/trunk-jpl/src/m/enum/MaximumNumberOfEnums.m (modified) CHG: new AutodiffFosReverseIndexEnum for reverse mode. Also changed ... Tue, 02 Oct 2012 21:46:18 GMT jschierm [13504] * issm/trunk-jpl/test/NightlyRun/test205.py (moved) NEW: Working test205.py. Tue, 02 Oct 2012 21:44:46 GMT jschierm [13503] * issm/trunk-jpl/src/m/geometry/FlagElements.py (modified) * issm/trunk-jpl/src/m/geometry/SegIntersect.py (modified) * issm/trunk-jpl/src/m/parameterization/setflowequation.py (modified) FIX: Fixes required for test205.py. Tue, 02 Oct 2012 21:29:43 GMT utke [13502] * issm/trunk-jpl/src/c/solutions/issm.cpp (modified) CHG space savers for EDF Tue, 02 Oct 2012 21:15:21 GMT Eric.Larour [13501] * issm/trunk-jpl/src/c/classes/IoModel.cpp (modified) CHG: active keep on in trace for reverse drivers Tue, 02 Oct 2012 21:14:59 GMT Eric.Larour [13500] * issm/trunk-jpl/src/m/classes/autodiff.m (modified) CHG: checkconsistency now accepts reverse drivers Tue, 02 Oct 2012 21:14:37 GMT Eric.Larour [13499] * issm/trunk-jpl/src/c/modules/AutodiffDriversx/AutodiffDriversx.cpp (modified) CHG: problem with driver name Tue, 02 Oct 2012 21:13:50 GMT utke [13498] * issm/trunk-jpl/src/c/modules/Solverx/SolverxSeq.cpp (modified) CHG implement fos_reverse for the solver and use a view to the ... Mon, 01 Oct 2012 23:25:09 GMT helsen [13497] * issm/trunk-jpl/externalpackages/petsc/install-3.2-greenplanet.sh (modified) CHG: enable shared libraries Mon, 01 Oct 2012 19:09:25 GMT jschierm [13496] * issm/trunk-jpl/src/m/mesh/bamg.py (modified) CHG: cosmetic. Mon, 01 Oct 2012 19:06:53 GMT jschierm [13495] * issm/trunk-jpl/src/m/mesh/bamg.m (modified) * issm/trunk-jpl/src/m/mesh/bamg.py (modified) NEW: Preliminary rifts section of bamg.py. Mon, 01 Oct 2012 17:13:02 GMT jschierm [13494] * issm/trunk-jpl/test/NightlyRun/test514.m (modified) * issm/trunk-jpl/test/NightlyRun/test514.py (added) NEW: test514.py now running. Mon, 01 Oct 2012 17:09:13 GMT jschierm [13493] * issm/trunk-jpl/src/m/mesh/bamg.py (modified) FIX: Fixed typo and instance dictionary reference. Mon, 01 Oct 2012 03:31:54 GMT mikep [13492] * issm/trunk-jpl/test/NightlyRun/InNeedOfDebugging (added) * issm/trunk-jpl/test/NightlyRun/InNeedOfDebugging/test1301.py (added) * issm/trunk-jpl/test/NightlyRun/InNeedOfDebugging/test1302.py (added) * issm/trunk-jpl/test/NightlyRun/InNeedOfDebugging/test1303.py (added) * issm/trunk-jpl/test/NightlyRun/InNeedOfDebugging/test1304.py (added) * issm/trunk-jpl/test/NightlyRun/InNeedOfDebugging/test1501.py (added) * issm/trunk-jpl/test/NightlyRun/InNeedOfDebugging/test1502.py (added) * issm/trunk-jpl/test/NightlyRun/InNeedOfDebugging/test1601.py (added) * issm/trunk-jpl/test/NightlyRun/InNeedOfDebugging/test1602.py (added) * issm/trunk-jpl/test/NightlyRun/InNeedOfDebugging/test205.py (added) * issm/trunk-jpl/test/NightlyRun/InNeedOfDebugging/test212.py (added) * issm/trunk-jpl/test/NightlyRun/InNeedOfDebugging/test213.py (added) * issm/trunk-jpl/test/NightlyRun/InNeedOfDebugging/test214.py (added) * issm/trunk-jpl/test/NightlyRun/InNeedOfDebugging/test215.py (added) * issm/trunk-jpl/test/NightlyRun/InNeedOfDebugging/test216.py (added) * issm/trunk-jpl/test/NightlyRun/InNeedOfDebugging/test217.py (added) * issm/trunk-jpl/test/NightlyRun/InNeedOfDebugging/test218.py (added) * issm/trunk-jpl/test/NightlyRun/InNeedOfDebugging/test219.py (added) * issm/trunk-jpl/test/NightlyRun/InNeedOfDebugging/test220.py (added) * issm/trunk-jpl/test/NightlyRun/InNeedOfDebugging/test3001.py (added) * issm/trunk-jpl/test/NightlyRun/InNeedOfDebugging/test3002.py (added) * issm/trunk-jpl/test/NightlyRun/InNeedOfDebugging/test3003.py (added) * issm/trunk-jpl/test/NightlyRun/InNeedOfDebugging/test3004.py (added) * issm/trunk-jpl/test/NightlyRun/InNeedOfDebugging/test3005.py (added) * issm/trunk-jpl/test/NightlyRun/InNeedOfDebugging/test3006.py (added) * issm/trunk-jpl/test/NightlyRun/InNeedOfDebugging/test3007.py (added) * issm/trunk-jpl/test/NightlyRun/InNeedOfDebugging/test3008.py (added) * issm/trunk-jpl/test/NightlyRun/InNeedOfDebugging/test3009.py (added) * issm/trunk-jpl/test/NightlyRun/InNeedOfDebugging/test3010.py (added) These are scripts that were in my queue to debug - ran out of time Mon, 01 Oct 2012 03:21:22 GMT mikep [13491] * issm/trunk-jpl/scripts/translateToPy.py (modified) * issm/trunk-jpl/test/NightlyRun/test202.py (added) * issm/trunk-jpl/test/NightlyRun/test203.py (added) * issm/trunk-jpl/test/NightlyRun/test204.py (added) * issm/trunk-jpl/test/NightlyRun/test206.py (added) * issm/trunk-jpl/test/NightlyRun/test207.py (added) * issm/trunk-jpl/test/NightlyRun/test208.py (added) * issm/trunk-jpl/test/NightlyRun/test209.py (added) * issm/trunk-jpl/test/NightlyRun/test210.py (added) * issm/trunk-jpl/test/NightlyRun/test211.py (added) Checkin last py scripts I was able to test successfully. Sat, 29 Sep 2012 18:31:11 GMT Eric.Larour [13490] * issm/trunk-jpl/src/m/classes/autodiff.py (modified) * issm/trunk-jpl/src/m/classes/qmu.py (modified) CHG: updated these classes to sync with corresponding .m classes Sat, 29 Sep 2012 04:47:48 GMT Eric.Larour [13489] * issm/trunk-jpl/externalpackages/adolc/update.sh (added) NEW: update of adolc clone. Sat, 29 Sep 2012 04:47:23 GMT Eric.Larour [13488] * issm/trunk-jpl/configs/config-linux64-murdo-ad.sh (modified) * issm/trunk-jpl/configs/config-linux64-murdo.sh (modified) CHG: updates to murdo configurations Sat, 29 Sep 2012 04:46:35 GMT Eric.Larour [13487] * issm/trunk-jpl/etc/environment.sh (modified) CHG: swithc from append to prepend on git variables Sat, 29 Sep 2012 04:17:31 GMT Eric.Larour [13486] * issm/trunk-jpl/src/c/EnumDefinitions/EnumDefinitions.h (modified) * issm/trunk-jpl/src/c/modules/EnumToStringx/EnumToStringx.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/CreateParameters.cpp (modified) * issm/trunk-jpl/src/c/modules/StringToEnumx/StringToEnumx.cpp (modified) * issm/trunk-jpl/src/m/classes/autodiff.m (modified) * issm/trunk-jpl/src/m/classes/qmu.m (modified) * issm/trunk-jpl/src/m/enum/AutodiffMassFluxSegmentsPresentEnum.m (added) * issm/trunk-jpl/src/m/enum/EnumDefinitions.py (modified) * issm/trunk-jpl/src/m/enum/MaximumNumberOfEnums.m (modified) * issm/trunk-jpl/src/m/enum/QmuMassFluxSegmentsPresentEnum.m (added) * issm/trunk-jpl/test/NightlyRun/test223.m (modified) CHG: fixed issues with mass flux segments where ... Sat, 29 Sep 2012 03:44:09 GMT Mathieu Morlighem [13485] * issm/trunk-jpl/src/c/modules/ModelProcessorx/CreateParameters.cpp (modified) BUG: do not check for segment if isautodiff=false Sat, 29 Sep 2012 00:33:52 GMT jschierm [13484] * issm/trunk-jpl/src/c/python/io/FetchPythonData.cpp (modified) * issm/trunk-jpl/src/m/classes/bamggeom.py (modified) CHG: Change handling of null matrices for python FetchData. Sat, 29 Sep 2012 00:21:21 GMT Eric.Larour [13483] * issm/trunk-jpl/src/c/EnumDefinitions/EnumDefinitions.h (modified) * issm/trunk-jpl/src/c/classes/objects/DependentObject.cpp (modified) * issm/trunk-jpl/src/c/classes/objects/DependentObject.h (modified) * issm/trunk-jpl/src/c/modules/EnumToStringx/EnumToStringx.cpp (modified) * issm/trunk-jpl/src/c/modules/MassFluxx/MassFluxx.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/Autodiff/CreateParametersAutodiff.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/CreateParameters.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/Dakota/CreateParametersDakota.cpp (modified) * issm/trunk-jpl/src/c/modules/RequestedDependentsx/RequestedDependentsx.cpp (modified) * issm/trunk-jpl/src/c/modules/StringToEnumx/StringToEnumx.cpp (modified) * issm/trunk-jpl/src/m/classes/autodiff.m (modified) * issm/trunk-jpl/src/m/classes/dependent.m (modified) * issm/trunk-jpl/src/m/classes/qmu.m (modified) * issm/trunk-jpl/src/m/enum/AutodiffDependentObjectIndicesEnum.m (added) * issm/trunk-jpl/src/m/enum/EnumDefinitions.py (modified) * issm/trunk-jpl/src/m/enum/MassFluxSegmentsEnum.m (added) * issm/trunk-jpl/src/m/enum/MassFluxSegmentsPresentEnum.m (added) * issm/trunk-jpl/src/m/enum/MaximumNumberOfEnums.m (modified) * issm/trunk-jpl/src/m/enum/QmuMassFluxSegmentsEnum.m (deleted) * issm/trunk-jpl/test/NightlyRun/ad.m (modified) CHG: added mass flux as a possible dependent variable. In order not ... Fri, 28 Sep 2012 23:04:47 GMT jschierm [13482] * issm/trunk-jpl/src/m/mesh/ComputeHessian.m (modified) * issm/trunk-jpl/src/m/mesh/ComputeHessian.py (added) * issm/trunk-jpl/src/m/mesh/ComputeMetric.m (modified) * issm/trunk-jpl/src/m/mesh/ComputeMetric.py (added) * issm/trunk-jpl/src/m/mesh/GetNodalFunctionsCoeff.py (modified) * issm/trunk-jpl/src/m/mesh/bamg.py (modified) * issm/trunk-jpl/src/m/miscellaneous/MatlabFuncs.py (modified) NEW: New python functions in support of test514.py (which doesn't yet ... Fri, 28 Sep 2012 22:54:30 GMT utke [13481] * issm/trunk-jpl/src/c/modules/Solverx/SolverxSeq.cpp (modified) CHG just changed the signature in adol-c so need to mirror it here Fri, 28 Sep 2012 22:47:38 GMT bduong [13480] * issm/trunk-jpl/src/modules/matlab/Makefile.am (modified) CHG: Changed ordering of LD flags. Fri, 28 Sep 2012 21:28:41 GMT cborstad [13479] * issm/trunk-jpl/src/m/mech/mechanicalproperties.m (modified) CHG: handle matice and matdamageice separately when calculating viscosity Fri, 28 Sep 2012 21:12:33 GMT bduong [13478] * issm/trunk-jpl/m4/issm_options.m4 (modified) BUG: Missing semicolon on prior modification to 'issm_options.m4' Fri, 28 Sep 2012 21:03:55 GMT bduong [13477] * issm/trunk-jpl/m4/issm_options.m4 (modified) CHG: ISSM now recognizes R2012b Matlab version. Fri, 28 Sep 2012 20:33:15 GMT cborstad [13476] * issm/trunk-jpl/src/m/mech/mechanicalproperties.m (modified) CHG: changed mechanicalproperties to sort eigenvalues in descending ... Fri, 28 Sep 2012 18:24:23 GMT Eric.Larour [13475] * issm/trunk-jpl/execution (modified) CHG: get svn to ignore some svn files Fri, 28 Sep 2012 02:01:02 GMT Eric.Larour [13474] * issm/trunk-jpl/externalpackages/adolc (modified) CHG: get svn to ignore some files Fri, 28 Sep 2012 01:59:50 GMT Eric.Larour [13473] * issm/trunk-jpl/test/NightlyRun/ad.m (modified) CHG: good test for AD Thu, 27 Sep 2012 22:40:18 GMT jschierm [13472] * issm/trunk-jpl/src/m/geometry/GetAreas.py (added) * issm/trunk-jpl/src/m/mesh/GetNodalFunctionsCoeff.py (added) NEW: Preliminary python versions of GetAreas and GetNodalFunctionsCoeff. Thu, 27 Sep 2012 21:51:11 GMT jschierm [13471] * issm/trunk-jpl/test/Par/Pig.py (modified) NEW: Enable SetMarineIceSheetBC in Pig.py. Thu, 27 Sep 2012 21:46:49 GMT jschierm [13470] * issm/trunk-jpl/src/m/boundaryconditions/SetIceShelfBC.py (modified) * issm/trunk-jpl/src/m/boundaryconditions/SetMarineIceSheetBC.m (modified) * issm/trunk-jpl/src/m/boundaryconditions/SetMarineIceSheetBC.py (added) * issm/trunk-jpl/src/m/classes/model/model.py (modified) * issm/trunk-jpl/src/m/geometry/FlagElements.py (modified) * issm/trunk-jpl/src/m/mesh/bamg.py (modified) CHG: More changes relating to python 1-d vectors vs. 2-d arrays (plus ... Thu, 27 Sep 2012 20:52:04 GMT Eric.Larour [13469] * issm/trunk-jpl/src/m/classes/prognostic.py (modified) CHG: fixed bug in requested_outputs check consistency Thu, 27 Sep 2012 18:23:20 GMT utke [13468] * issm/trunk-jpl/src/c/modules/AutodiffDriversx/AutodiffDriversx.cpp (modified) CHG ignore the return codes for now Thu, 27 Sep 2012 18:00:28 GMT jschierm [13467] * issm/trunk-jpl/src/m/boundaryconditions/SetIceShelfBC.py (modified) FIX: Fixed call to ContourToMesh. Thu, 27 Sep 2012 17:51:08 GMT jschierm [13466] * issm/trunk-jpl/test/Par/SquareShelf.py (modified) CHG: Update for multiple columns. Thu, 27 Sep 2012 17:46:27 GMT mikep [13465] * issm/trunk-jpl/src/m/boundaryconditions/SetIceShelfBC.py (modified) * issm/trunk-jpl/test/Par/SquareShelf.py (modified) minor cleanup Thu, 27 Sep 2012 17:15:23 GMT Mathieu Morlighem [13464] * issm/trunk-jpl/src/modules/python/Makefile.am (modified) BUG: do not compile ContourToMesh twice Thu, 27 Sep 2012 16:48:29 GMT jschierm [13463] * issm/trunk-jpl/test/NightlyRun/test121.py (modified) * issm/trunk-jpl/test/NightlyRun/test122.py (modified) * issm/trunk-jpl/test/Par/Pig.py (added) * issm/trunk-jpl/test/Par/SquareShelfConstrained.py (modified) CHG: Changed all data 1-d vectors to 2-d arrays to allow multiple ... Thu, 27 Sep 2012 16:44:58 GMT jschierm [13462] * issm/trunk-jpl/src/m/boundaryconditions/SetIceShelfBC.py (modified) * issm/trunk-jpl/src/m/classes/model/model.py (modified) * issm/trunk-jpl/src/m/classes/thermal.py (modified) * issm/trunk-jpl/src/m/materials/paterson.m (modified) * issm/trunk-jpl/src/m/materials/paterson.py (modified) * issm/trunk-jpl/src/m/parameterization/setflowequation.py (modified) * issm/trunk-jpl/src/m/solve/parseresultsfromdisk.py (modified) CHG: Changed all data 1-d vectors to 2-d arrays to allow multiple ... Thu, 27 Sep 2012 16:26:29 GMT Eric.Larour [13461] * issm/trunk-jpl/src/c/EnumDefinitions/EnumDefinitions.h (modified) * issm/trunk-jpl/src/c/modules/AutodiffDriversx/AutodiffDriversx.cpp (modified) * issm/trunk-jpl/src/c/modules/EnumToStringx/EnumToStringx.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/Autodiff/CreateParametersAutodiff.cpp (modified) * issm/trunk-jpl/src/c/modules/StringToEnumx/StringToEnumx.cpp (modified) * issm/trunk-jpl/src/m/classes/autodiff.m (modified) * issm/trunk-jpl/src/m/classes/independent.m (modified) * issm/trunk-jpl/src/m/enum/AutodiffFovForwardIndicesEnum.m (added) * issm/trunk-jpl/src/m/enum/EnumDefinitions.py (modified) * issm/trunk-jpl/src/m/enum/MaximumNumberOfEnums.m (modified) * issm/trunk-jpl/test/NightlyRun/ad.m (modified) CHG: AutodiffDriversx now driven by the type of driver string ... Thu, 27 Sep 2012 13:41:37 GMT jschierm [13460] * issm/trunk-jpl/test/NightlyRun/runme.py (modified) CHG: Take advantage of python syntax. Thu, 27 Sep 2012 05:44:12 GMT utke [13459] * issm/trunk-jpl/src/c/shared/Alloc/xNewDelete.h (modified) CHG fix the operator order with () Thu, 27 Sep 2012 05:28:00 GMT utke [13458] * issm/trunk-jpl/src/c/modules/AutodiffDriversx/AutodiffDriversx.cpp (modified) CHG fix wrong condition Thu, 27 Sep 2012 03:04:17 GMT Eric.Larour [13457] * issm/trunk-jpl/src/c/modules/AutodiffDriversx/AutodiffDriversx.cpp (modified) CHG: minor Thu, 27 Sep 2012 02:20:29 GMT Mathieu Morlighem [13456] * issm/trunk-jpl/test/NightlyRun/runme.py (modified) BUG: fix python NR, do not stop if failure Thu, 27 Sep 2012 00:02:08 GMT mikep [13455] * issm/trunk-jpl/scripts/mToPy.py (added) * issm/trunk-jpl/scripts/translateToPy.py (added) * issm/trunk-jpl/src/m/boundaryconditions/SetIceShelfBC.py (modified) * issm/trunk-jpl/src/m/classes/flowequation.py (modified) * issm/trunk-jpl/src/modules/python/Makefile.am (modified) * issm/trunk-jpl/test/NightlyRun/test201.py (added) * issm/trunk-jpl/test/NightlyRun/test3001.py (added) * issm/trunk-jpl/test/NightlyRun/test3002.py (added) * issm/trunk-jpl/test/NightlyRun/test3003.py (added) * issm/trunk-jpl/test/NightlyRun/test3004.py (added) * issm/trunk-jpl/test/NightlyRun/test3005.py (added) * issm/trunk-jpl/test/NightlyRun/test3006.py (added) * issm/trunk-jpl/test/NightlyRun/test3007.py (added) * issm/trunk-jpl/test/NightlyRun/test3008.py (added) * issm/trunk-jpl/test/NightlyRun/test3009.py (added) * issm/trunk-jpl/test/NightlyRun/test3010.py (added) * issm/trunk-jpl/test/Par/SquareShelf.py (added) t cases 201, 3001..3010. Conversion of SquareShelf.par to .py. ... Wed, 26 Sep 2012 23:52:00 GMT Eric.Larour [13454] * issm/trunk-jpl/test (modified) CHG: get svn to ignore ad tests. Wed, 26 Sep 2012 23:05:09 GMT utke [13453] * issm/trunk-jpl/src/c/modules/AutodiffDriversx/AutodiffDriversx.cpp (modified) CHG fix error message text and remove extraneous condition Wed, 26 Sep 2012 22:32:42 GMT utke [13452] * issm/trunk-jpl/src/c/modules/AutodiffDriversx/AutodiffDriversx.cpp (modified) CHG allow more forward variants to be used (note that jacobian may ... Wed, 26 Sep 2012 22:30:13 GMT utke [13451] * issm/trunk-jpl/src/c/shared/Alloc/xNewDelete.h (modified) NEW 2-dim variant of zero init array allocation Wed, 26 Sep 2012 21:13:26 GMT Eric.Larour [13450] * issm/trunk-jpl/src/c/modules/RequestedOutputsx/RequestedOutputsx.cpp (modified) CHG: added new requested output max vel Wed, 26 Sep 2012 19:06:42 GMT jschierm [13449] * issm/trunk-jpl/src/m/geometry/FlagElements.py (modified) * issm/trunk-jpl/src/m/parameterization/setmask.py (modified) FIX: Fixed call to ContourToMesh in FlagElements and got setmask working. Wed, 26 Sep 2012 18:27:53 GMT jschierm [13448] * issm/trunk-jpl/src/c/python/io/pythonio.h (modified) FIX: Missing from changeset [13447]. Wed, 26 Sep 2012 18:25:03 GMT jschierm [13447] * issm/trunk-jpl/src/c/matlab/io/WriteMatlabData.cpp (modified) * issm/trunk-jpl/src/c/matlab/io/matlabio.h (modified) * issm/trunk-jpl/src/c/python/io/WritePythonData.cpp (modified) * issm/trunk-jpl/src/modules/ContourToMesh/ContourToMesh.cpp (modified) FIX: For python, modules must return all arguments, so add WriteData ... Wed, 26 Sep 2012 15:02:20 GMT utke [13446] * issm/trunk-jpl/src/c/modules/AutodiffDriversx/AutodiffDriversx.cpp (modified) CHG : for solver invocations with changing sizes let adol-c track the ... Wed, 26 Sep 2012 14:42:29 GMT Eric.Larour [13445] * issm/trunk-jpl/src/c/classes/IoModel.cpp (modified) * issm/trunk-jpl/src/c/solutions/issm.cpp (modified) CHG: move trace_on for ADOLC within the IoModel constructor. Wed, 26 Sep 2012 02:17:37 GMT Mathieu Morlighem [13444] * issm/trunk-jpl/src/m/classes/prognostic.py (modified) BUG: typo Tue, 25 Sep 2012 23:48:47 GMT Mathieu Morlighem [13443] * issm/trunk-jpl/src/m/classes/prognostic.m (modified) * issm/trunk-jpl/src/m/classes/prognostic.py (modified) CHG: updated python version of prognostic.m so that NR works Tue, 25 Sep 2012 23:46:59 GMT Mathieu Morlighem [13442] * issm/trunk-jpl/scripts/report.sh (modified) BUG: fixed python NR report Tue, 25 Sep 2012 22:58:55 GMT jschierm [13441] * issm/trunk-jpl/src/modules/python/Makefile.am (modified) NEW: Added ContourToMesh to python Makefile.am. Tue, 25 Sep 2012 22:43:03 GMT cborstad [13440] * issm/trunk-jpl/src/m/plot/applyoptions.py (modified) * issm/trunk-jpl/src/m/plot/plot_manager.py (modified) * issm/trunk-jpl/src/m/plot/plot_mesh.py (modified) * issm/trunk-jpl/src/m/plot/plot_unit.py (added) * issm/trunk-jpl/src/m/plot/plotmodel.py (modified) * issm/trunk-jpl/src/m/plot/processdata.m (modified) * issm/trunk-jpl/src/m/plot/processdata.py (added) * issm/trunk-jpl/src/m/plot/processmesh.py (modified) NEW: processdata and plot_unit for python plotting, some new plot ... Tue, 25 Sep 2012 21:47:55 GMT jschierm [13439] * issm/trunk-jpl/src/m/classes/matice.py (modified) * issm/trunk-jpl/src/m/classes/thermal.py (modified) FIX: Make thermal.py work for vector, but need to know about multiple ... Tue, 25 Sep 2012 19:45:08 GMT Eric.Larour [13438] * issm/trunk-jpl/src/c/EnumDefinitions/EnumDefinitions.h (modified) * issm/trunk-jpl/src/c/classes/IoModel.cpp (modified) * issm/trunk-jpl/src/c/modules/EnumToStringx/EnumToStringx.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/CreateParameters.cpp (modified) * issm/trunk-jpl/src/c/modules/StringToEnumx/StringToEnumx.cpp (modified) * issm/trunk-jpl/src/c/solutions/diagnostic_core.cpp (modified) * issm/trunk-jpl/src/c/solutions/prognostic_core.cpp (modified) * issm/trunk-jpl/src/m/classes/prognostic.m (modified) * issm/trunk-jpl/src/m/enum/EnumDefinitions.py (modified) * issm/trunk-jpl/src/m/enum/MaximumNumberOfEnums.m (modified) * issm/trunk-jpl/src/m/enum/PrognosticNumRequestedOutputsEnum.m (added) * issm/trunk-jpl/src/m/enum/PrognosticRequestedOutputsEnum.m (added) * issm/trunk-jpl/test/Archives/Archive3015.nc (added) * issm/trunk-jpl/test/NightlyRun/ad.m (modified) * issm/trunk-jpl/test/NightlyRun/runme.m (modified) * issm/trunk-jpl/test/NightlyRun/test3015.m (added) CHG: -added test3015 to check on AD mode runs for prognostic mode ... Tue, 25 Sep 2012 18:41:41 GMT jschierm [13437] * issm/trunk-jpl/test/NightlyRun/test119.m (modified) * issm/trunk-jpl/test/NightlyRun/test119.py (added) NEW: Working python test119. Tue, 25 Sep 2012 18:41:00 GMT jschierm [13436] * issm/trunk-jpl/src/m/classes/bamggeom.py (modified) * issm/trunk-jpl/src/m/classes/bamgmesh.py (modified) * issm/trunk-jpl/src/m/mesh/bamg.m (modified) * issm/trunk-jpl/src/m/mesh/bamg.py (added) * issm/trunk-jpl/src/m/mesh/meshconvert.py (modified) * issm/trunk-jpl/src/m/miscellaneous/MatlabFuncs.py (modified) NEW: Working python bamg et al. Tue, 25 Sep 2012 16:40:27 GMT Eric.Larour [13435] * issm/trunk-jpl/src/c/shared/Numerics/Synchronize.sh (modified) * issm/trunk-jpl/src/c/shared/Numerics/Verbosity.cpp (modified) * issm/trunk-jpl/src/c/shared/Numerics/Verbosity.h (modified) * issm/trunk-jpl/src/m/classes/verbose.m (modified) CHG: Added new level of verbosity for autodiff mode. Also updated ... Tue, 25 Sep 2012 16:26:14 GMT Eric.Larour [13434] * issm/trunk-jpl/src/c/solutions/issm.cpp (modified) * issm/trunk-jpl/src/c/solutions/prognostic_core.cpp (modified) CHG: fixed bug that was calling RequestedDependents repeatedly during ... Tue, 25 Sep 2012 16:19:33 GMT Eric.Larour [13433] * issm/trunk-jpl/test/NightlyRun/ad.m (modified) * issm/trunk-jpl/test/NightlyRun/test3001.m (modified) * issm/trunk-jpl/test/NightlyRun/test3002.m (modified) * issm/trunk-jpl/test/NightlyRun/test3003.m (modified) * issm/trunk-jpl/test/NightlyRun/test3004.m (modified) * issm/trunk-jpl/test/NightlyRun/test3005.m (modified) * issm/trunk-jpl/test/NightlyRun/test3006.m (modified) * issm/trunk-jpl/test/NightlyRun/test3007.m (modified) * issm/trunk-jpl/test/NightlyRun/test3008.m (modified) * issm/trunk-jpl/test/NightlyRun/test3009.m (modified) * issm/trunk-jpl/test/NightlyRun/test3010.m (modified) CHG: added hooks to verbose autodiff Tue, 25 Sep 2012 05:26:49 GMT Eric.Larour [13432] * issm/trunk-jpl/src/c/Makefile.am (modified) * issm/trunk-jpl/src/c/classes/IoModel.cpp (modified) * issm/trunk-jpl/src/c/classes/IoModel.h (modified) * issm/trunk-jpl/src/c/modules/AutodiffDriversx/AutodiffDriversx.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/Autodiff/CreateParametersAutodiff.cpp (modified) * issm/trunk-jpl/src/c/modules/ModelProcessorx/ModelProcessorx.cpp (modified) * issm/trunk-jpl/src/c/modules/RequestedDependentsx/RequestedDependentsx.cpp (modified) CHG: new way of handling independent and dependent objects. We create ... Tue, 25 Sep 2012 05:25:47 GMT Eric.Larour [13431] * issm/trunk-jpl/test/NightlyRun/ad.m (modified) CHG: changed ad test run to work in prognostic mode Tue, 25 Sep 2012 05:25:24 GMT Eric.Larour [13430] * issm/trunk-jpl/src/c/modules/EnumToStringx/EnumToStringx.cpp (modified) * issm/trunk-jpl/src/c/modules/StringToEnumx/StringToEnumx.cpp (modified) NEW: new enums for dependent and independent objects Tue, 25 Sep 2012 05:24:10 GMT Eric.Larour [13429] * issm/trunk-jpl/src/m/classes/autodiff.m (modified) * issm/trunk-jpl/src/m/classes/dependent.m (added) * issm/trunk-jpl/src/m/classes/independent.m (added) NEW: new dependent and independent classes, added to autodiff class Tue, 25 Sep 2012 05:23:42 GMT Eric.Larour [13428] * issm/trunk-jpl/src/c/solutions/prognostic_core.cpp (modified) CHG: correct way of requested dependents Tue, 25 Sep 2012 05:23:14 GMT Eric.Larour [13427] * issm/trunk-jpl/src/c/EnumDefinitions/EnumDefinitions.h (modified) * issm/trunk-jpl/src/m/enum/AutodiffDependentObjectNamesEnum.m (added) * issm/trunk-jpl/src/m/enum/AutodiffDependentObjectTypesEnum.m (added) * issm/trunk-jpl/src/m/enum/AutodiffDependentObjectsEnum.m (added) * issm/trunk-jpl/src/m/enum/AutodiffDependentsEnum.m (deleted) * issm/trunk-jpl/src/m/enum/AutodiffDriverEnum.m (added) * issm/trunk-jpl/src/m/enum/AutodiffFosForwardIndexEnum.m (added) * issm/trunk-jpl/src/m/enum/AutodiffFosForwardOutputEnum.m (deleted) * issm/trunk-jpl/src/m/enum/AutodiffIndependentObjectNamesEnum.m (added) * issm/trunk-jpl/src/m/enum/AutodiffIndependentObjectTypesEnum.m (added) * issm/trunk-jpl/src/m/enum/AutodiffIndependentObjectsEnum.m (added) * issm/trunk-jpl/src/m/enum/AutodiffIndependentsEnum.m (deleted) * issm/trunk-jpl/src/m/enum/AutodiffNumDependentObjectsEnum.m (added) * issm/trunk-jpl/src/m/enum/AutodiffNumIndependentObjectsEnum.m (added) * issm/trunk-jpl/src/m/enum/DataSetParamEnum.m (added) * issm/trunk-jpl/src/m/enum/DependentObjectEnum.m (added) * issm/trunk-jpl/src/m/enum/EnumDefinitions.py (modified) * issm/trunk-jpl/src/m/enum/IndependentObjectEnum.m (added) * issm/trunk-jpl/src/m/enum/MaximumNumberOfEnums.m (modified) New enums for dependent and independent variables Tue, 25 Sep 2012 05:22:36 GMT Eric.Larour [13426] * issm/trunk-jpl/src/c/classes/objects/DependentObject.cpp (added) * issm/trunk-jpl/src/c/classes/objects/DependentObject.h (added) * issm/trunk-jpl/src/c/classes/objects/IndependentObject.cpp (added) * issm/trunk-jpl/src/c/classes/objects/IndependentObject.h (added) * issm/trunk-jpl/src/c/classes/objects/objects.h (modified) New dependent and independent objects Tue, 25 Sep 2012 05:22:10 GMT Eric.Larour [13425] * issm/trunk-jpl/src/c/Container/Parameters.cpp (modified) * issm/trunk-jpl/src/c/Container/Parameters.h (modified) * issm/trunk-jpl/src/c/classes/objects/Params/BoolParam.h (modified) * issm/trunk-jpl/src/c/classes/objects/Params/DataSetParam.cpp (added) * issm/trunk-jpl/src/c/classes/objects/Params/DataSetParam.h (added) * issm/trunk-jpl/src/c/classes/objects/Params/DoubleMatArrayParam.h (modified) * issm/trunk-jpl/src/c/classes/objects/Params/DoubleMatParam.h (modified) * issm/trunk-jpl/src/c/classes/objects/Params/DoubleParam.h (modified) * issm/trunk-jpl/src/c/classes/objects/Params/DoubleVecParam.h (modified) * issm/trunk-jpl/src/c/classes/objects/Params/FileParam.h (modified) * issm/trunk-jpl/src/c/classes/objects/Params/GenericParam.h (modified) * issm/trunk-jpl/src/c/classes/objects/Params/IntMatParam.h (modified) * issm/trunk-jpl/src/c/classes/objects/Params/IntParam.h (modified) * issm/trunk-jpl/src/c/classes/objects/Params/IntVecParam.h (modified) * issm/trunk-jpl/src/c/classes/objects/Params/MatrixParam.h (modified) * issm/trunk-jpl/src/c/classes/objects/Params/Param.h (modified) * issm/trunk-jpl/src/c/classes/objects/Params/StringArrayParam.h (modified) * issm/trunk-jpl/src/c/classes/objects/Params/StringParam.h (modified) * issm/trunk-jpl/src/c/classes/objects/Params/TransientParam.h (modified) * issm/trunk-jpl/src/c/classes/objects/Params/VectorParam.h (modified) New DataSet parameter Tue, 25 Sep 2012 01:23:56 GMT cborstad [13424] * issm/trunk-jpl/src/m/classes/pairoptions.py (modified) * issm/trunk-jpl/src/m/plot/applyoptions.py (modified) * issm/trunk-jpl/src/m/plot/plot_manager.py (modified) NEW: a couple more new plot options Mon, 24 Sep 2012 21:54:33 GMT cborstad [13423] * issm/trunk-jpl/src/m/miscellaneous/fielddisplay.py (modified) BUG: fixed typo in fielddisplay loop Mon, 24 Sep 2012 21:21:19 GMT jschierm [13422] * issm/trunk-jpl/src/m/classes/thermal.py (modified) FIX: Python even more rusty after a week away. Mon, 24 Sep 2012 18:24:02 GMT jschierm [13421] * issm/trunk-jpl/src/m/classes/thermal.py (modified) FIX: Python rusty after a week away. Mon, 24 Sep 2012 18:21:44 GMT jschierm [13420] * issm/trunk-jpl/src/m/classes/thermal.py (modified) CHG: Modified thermal.py corresponding to changeset [13401].