#
# ChangeLog for /
#
# Generated by Trac 1.4.3
# 05/19/25 11:34:24

Wed, 25 Apr 2012 19:40:47 GMT Eric.Larour [12134]
	* issm/trunk-jpl/externalpackages/nose (modified)
	* issm/trunk-jpl/externalpackages/nose/nose-1.1.2.tar.gz (added)

	nose package


Wed, 25 Apr 2012 19:38:41 GMT Eric.Larour [12133]
	* issm/trunk-jpl/externalpackages/scipy (modified)

	Ignoring some svn files


Wed, 25 Apr 2012 19:38:12 GMT Eric.Larour [12132]
	* issm/trunk-jpl/externalpackages/freetype (modified)

	Ignoring src and install for svn


Wed, 25 Apr 2012 19:37:55 GMT Eric.Larour [12131]
	* issm/trunk-jpl/externalpackages/freetype (added)
	* issm/trunk-jpl/externalpackages/freetype/freetype-2.4.9.tar.gz (added)
	* issm/trunk-jpl/externalpackages/freetype/install.sh (added)

	Freetype package


Wed, 25 Apr 2012 19:07:12 GMT glperez [12130]
	* issm/trunk-jpl/configs/config-arm-linux.sh (modified)
	* issm/trunk-jpl/externalpackages/android/android-sdk/install.sh (modified)

	Minor modification to config-arm-linux.sh


Wed, 25 Apr 2012 17:02:43 GMT glperez [12129]
	* issm/trunk-jpl/configs/config-arm-linux.sh (moved)
	* issm/trunk-jpl/externalpackages/triangle/triangle.c.patch.python (modified)

	Minor modification to Triangle.c python patch and the arm-linux ...


Wed, 25 Apr 2012 16:59:22 GMT Eric.Larour [12128]
	* issm/trunk-jpl/src/c/Makefile.am (modified)
	* issm/trunk-jpl/src/c/toolkits/python/pythonincludes.h (modified)

	Folded NPY_DEPRECATED python stuff into pythonincludes header file


Wed, 25 Apr 2012 16:36:49 GMT Eric.Larour [12127]
	* issm/trunk-jpl/src/c/modules/ContourToMeshx/ContourToMeshx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/ContourToMeshx/ContourToMeshx.h (modified)
	* issm/trunk-jpl/src/c/modules/ContourToMeshx/ContourToMeshxt.cpp (modified)
	* issm/trunk-jpl/src/m/utils/BC/SetIceShelfBC.py (added)
	* issm/trunk-jpl/src/modules/ContourToMesh/ContourToMesh.cpp (modified)
	* issm/trunk-jpl/src/modules/ContourToMesh/ContourToMesh.h (modified)

	Starting conversion of SetIceShelfBC
	Needs ContourToMesh python ...


Wed, 25 Apr 2012 16:18:43 GMT Eric.Larour [12126]
	* issm/trunk-jpl/src/m/utils/Meca/paterson.py (added)

	Converted paterson.m to paterson.py


Wed, 25 Apr 2012 16:18:20 GMT Eric.Larour [12125]
	* issm/trunk-jpl/src/m/model/mesh/triangle.py (modified)

	Bug fix.


Wed, 25 Apr 2012 16:17:55 GMT Eric.Larour [12124]
	* issm/trunk-jpl/test/Par/SquareShelfConstrained.py (modified)

	Almost finished translated to python


Wed, 25 Apr 2012 16:17:29 GMT Eric.Larour [12123]
	* issm/trunk-jpl/src/m/classes/autodiff.py (modified)
	* issm/trunk-jpl/src/m/classes/balancethickness.py (modified)
	* issm/trunk-jpl/src/m/classes/basalforcings.py (modified)
	* issm/trunk-jpl/src/m/classes/constants.py (modified)
	* issm/trunk-jpl/src/m/classes/debug.py (modified)
	* issm/trunk-jpl/src/m/classes/diagnostic.py (modified)
	* issm/trunk-jpl/src/m/classes/flowequation.py (modified)
	* issm/trunk-jpl/src/m/classes/friction.py (modified)
	* issm/trunk-jpl/src/m/classes/geometry.py (modified)
	* issm/trunk-jpl/src/m/classes/groundingline.py (modified)
	* issm/trunk-jpl/src/m/classes/hydrology.py (modified)
	* issm/trunk-jpl/src/m/classes/initialization.py (modified)
	* issm/trunk-jpl/src/m/classes/inversion.py (modified)
	* issm/trunk-jpl/src/m/classes/mask.py (modified)
	* issm/trunk-jpl/src/m/classes/materials.py (modified)
	* issm/trunk-jpl/src/m/classes/mesh.py (modified)
	* issm/trunk-jpl/src/m/classes/miscellaneous.py (modified)
	* issm/trunk-jpl/src/m/classes/private.py (modified)
	* issm/trunk-jpl/src/m/classes/prognostic.py (modified)
	* issm/trunk-jpl/src/m/classes/qmu.py (modified)
	* issm/trunk-jpl/src/m/classes/radaroverlay.py (modified)
	* issm/trunk-jpl/src/m/classes/rifts.py (modified)
	* issm/trunk-jpl/src/m/classes/settings.py (modified)
	* issm/trunk-jpl/src/m/classes/steadystate.py (modified)
	* issm/trunk-jpl/src/m/classes/surfaceforcings.py (modified)
	* issm/trunk-jpl/src/m/classes/thermal.py (modified)
	* issm/trunk-jpl/src/m/classes/timestepping.py (modified)
	* issm/trunk-jpl/src/m/classes/transient.py (modified)

	Added setdefaultparameters routines to python classes


Wed, 25 Apr 2012 04:48:49 GMT Eric.Larour [12122]
	* issm/trunk-jpl/test/NightlyRun/test102.py (modified)
	* issm/trunk-jpl/test/Par/SquareShelfConstrained.py (added)

	Converting SquareShelfConstrained.par to SquareShelfConstrained.py ...


Wed, 25 Apr 2012 04:45:58 GMT Eric.Larour [12121]
	* issm/trunk-jpl/src/c/modules/ContourToNodesx/ContourToNodesx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/ContourToNodesx/ContourToNodesx.h (modified)
	* issm/trunk-jpl/src/c/modules/InterpFromMeshToMesh2dx/InterpFromMeshToMesh2dx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/InterpFromMeshToMesh2dx/InterpFromMeshToMesh2dx.h (modified)

	Added new ContourToNodesx prototype to handle same functionality, but ...


Wed, 25 Apr 2012 04:44:26 GMT Eric.Larour [12120]
	* issm/trunk-jpl/src/c/python/io/FetchPythonData.cpp (modified)
	* issm/trunk-jpl/src/c/python/io/pythonio.h (modified)

	Added fetch data capability for double* vector


Wed, 25 Apr 2012 04:44:05 GMT Eric.Larour [12119]
	* issm/trunk-jpl/src/c/python/include/python_macros.h (modified)

	Added nrhs as input argument for all python modules to access


Wed, 25 Apr 2012 04:43:39 GMT Eric.Larour [12118]
	* issm/trunk-jpl/src/modules/InterpFromMeshToMesh2d/InterpFromMeshToMesh2d.cpp (modified)
	* issm/trunk-jpl/src/modules/InterpFromMeshToMesh2d/InterpFromMeshToMesh2d.h (modified)
	* issm/trunk-jpl/src/modules/python/Makefile.am (modified)

	Adapted InterpFromMeshToMesh2d  to python


Wed, 25 Apr 2012 04:42:26 GMT Eric.Larour [12117]
	* issm/trunk-jpl/src/m/classes/materials.py (modified)

	Added defaults for materials class


Wed, 25 Apr 2012 04:42:08 GMT Eric.Larour [12116]
	* issm/trunk-jpl/src/m/model/mesh/triangle.py (modified)

	Indexing bug


Wed, 25 Apr 2012 01:23:23 GMT glperez [12115]
	* issm/trunk-jpl/externalpackages/gsl/install-android-4.0.sh (added)
	* issm/trunk-jpl/externalpackages/triangle/configs/android/android-4.0/configure.make (modified)
	* issm/trunk-jpl/m4/issm_options.m4 (modified)

	Created the install script for GSL to cross-compile for arm-linux- ...


Tue, 24 Apr 2012 15:55:05 GMT Eric.Larour [12114]
	* issm (modified)

	ignore publications


Tue, 24 Apr 2012 15:45:25 GMT Eric.Larour [12113]
	* issm/trunk-jpl/src/m/classes/model.py (modified)
	* issm/trunk-jpl/src/m/model/addnote.py (added)
	* issm/trunk-jpl/src/m/model/parameterization/parameterize.py (added)
	* issm/trunk-jpl/test/NightlyRun/test102.py (modified)

	Implemented parameterize routine in python


Tue, 24 Apr 2012 06:04:27 GMT Eric.Larour [12112]
	* issm/trunk-jpl/configs/config-macosx64-larour-nopetsc.sh (modified)
	* issm/trunk-jpl/src/c/python/io/FetchPythonData.cpp (modified)
	* issm/trunk-jpl/src/c/python/io/WritePythonData.cpp (modified)
	* issm/trunk-jpl/src/c/python/io/pythonio.h (modified)
	* issm/trunk-jpl/src/m/model/mesh (modified)
	* issm/trunk-jpl/src/m/model/mesh/triangle.py (modified)
	* issm/trunk-jpl/src/m/model/setmask.py (added)
	* issm/trunk-jpl/src/m/utils/Geometry/FlagElements.py (added)
	* issm/trunk-jpl/src/modules/ElementConnectivity/ElementConnectivity.cpp (modified)
	* issm/trunk-jpl/src/modules/ElementConnectivity/ElementConnectivity.h (modified)
	* issm/trunk-jpl/src/modules/NodeConnectivity/NodeConnectivity.cpp (modified)
	* issm/trunk-jpl/src/modules/NodeConnectivity/NodeConnectivity.h (modified)
	* issm/trunk-jpl/src/modules/TriMesh/TriMesh.cpp (modified)
	* issm/trunk-jpl/src/modules/python/Makefile.am (modified)
	* issm/trunk-jpl/startup.py (modified)
	* issm/trunk-jpl/test/NightlyRun/test102.py (modified)

	Finished python version of setmask.py and FlagElements.py
	Also ...


Tue, 24 Apr 2012 01:19:45 GMT Eric.Larour [12111]
	* issm/trunk-jpl/test/NightlyRun/test102.py (moved)

	Moving to 102


Tue, 24 Apr 2012 01:19:32 GMT Eric.Larour [12110]
	* issm/trunk-jpl/test/NightlyRun/test101.py (modified)

	triangle now working completely in python


Mon, 23 Apr 2012 21:57:09 GMT Mathieu Morlighem [12109]
	* issm/trunk-jpl/src/c/Container/Nodes.cpp (modified)

	Fixed bug introduced while stripping MPI


Mon, 23 Apr 2012 21:37:14 GMT Eric.Larour [12108]
	* issm/trunk-jpl/src/c/Container/Nodes.cpp (modified)

	Bug in MPI_Gather


Mon, 23 Apr 2012 18:21:18 GMT habbalf [12107]
	* issm/trunk-jpl/externalpackages/petsc/install-dev-linux64.sh (modified)

	Added spai install


Mon, 23 Apr 2012 18:03:24 GMT habbalf [12106]
	* issm/trunk-jpl/src/c/toolkits/petsc/patches/NewMat.cpp (modified)

	Create dense matrix if sparsity=1


Mon, 23 Apr 2012 18:03:05 GMT habbalf [12105]
	* issm/trunk-jpl/src/c/objects/Numerics/Matrix.cpp (modified)

	oops, wrong file


Mon, 23 Apr 2012 18:01:38 GMT habbalf [12104]
	* issm/trunk-jpl/src/c/objects/Numerics/Matrix.cpp (modified)

	Create dense matrix if sparsity=1


Sat, 21 Apr 2012 02:13:33 GMT Eric.Larour [12103]
	* issm/trunk-jpl/configs/config-arm.sh (modified)

	Arm processor configuration


Sat, 21 Apr 2012 02:07:47 GMT Eric.Larour [12102]
	* issm/trunk-jpl/configs/config-macosx64-larour-nopetsc.sh (modified)
	* issm/trunk-jpl/externalpackages/nose/install-macosx64sh (modified)
	* issm/trunk-jpl/externalpackages/scipy/install-macosx64.sh (modified)
	* issm/trunk-jpl/m4/issm_options.m4 (modified)
	* issm/trunk-jpl/src/Makefile.am (modified)
	* issm/trunk-jpl/src/c/Container/Constraints.cpp (modified)
	* issm/trunk-jpl/src/c/Container/Elements.cpp (modified)
	* issm/trunk-jpl/src/c/Container/Loads.cpp (modified)
	* issm/trunk-jpl/src/c/Container/Nodes.cpp (modified)
	* issm/trunk-jpl/src/c/Container/Vertices.cpp (modified)
	* issm/trunk-jpl/src/c/Makefile.am (modified)
	* issm/trunk-jpl/src/c/matlab/io/PetscMatrixToDoubleMatrix.cpp (deleted)
	* issm/trunk-jpl/src/c/matlab/io/PetscVectorToDoubleVector.cpp (deleted)
	* issm/trunk-jpl/src/c/matlab/io/WriteMatlabData.cpp (modified)
	* issm/trunk-jpl/src/c/matlab/io/matlabio.h (modified)
	* issm/trunk-jpl/src/c/modules/ConstraintsStatex/RiftConstraintsState.cpp (modified)
	* issm/trunk-jpl/src/c/modules/ConstraintsStatex/ThermalConstraintsState.cpp (modified)
	* issm/trunk-jpl/src/c/modules/ConstraintsStatex/ThermalIsPresent.cpp (modified)
	* issm/trunk-jpl/src/c/modules/DragCoefficientAbsGradientx/DragCoefficientAbsGradientx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/ElementResponsex/ElementResponsex.cpp (modified)
	* issm/trunk-jpl/src/c/modules/GroundinglineMigrationx/GroundinglineMigrationx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/IceVolumex/IceVolumex.cpp (modified)
	* issm/trunk-jpl/src/c/modules/InputConvergencex/InputConvergencex.cpp (modified)
	* issm/trunk-jpl/src/c/modules/MassFluxx/MassFluxx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/MaxAbsVxx/MaxAbsVxx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/MaxAbsVyx/MaxAbsVyx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/MaxAbsVzx/MaxAbsVzx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/MaxVelx/MaxVelx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/MaxVxx/MaxVxx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/MaxVyx/MaxVyx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/MaxVzx/MaxVzx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/MeshPartitionx/MeshPartitionx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/MinVelx/MinVelx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/MinVxx/MinVxx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/MinVyx/MinVyx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/MinVzx/MinVzx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/NodalValuex/NodalValuex.cpp (modified)
	* issm/trunk-jpl/src/c/modules/ParsePetscOptionsx/ParsePetscOptionsx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/RheologyBbarAbsGradientx/RheologyBbarAbsGradientx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/SurfaceAbsVelMisfitx/SurfaceAbsVelMisfitx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/SurfaceAreax/SurfaceAreax.cpp (modified)
	* issm/trunk-jpl/src/c/modules/SurfaceAverageVelMisfitx/SurfaceAverageVelMisfitx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/SurfaceLogVelMisfitx/SurfaceLogVelMisfitx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/SurfaceLogVxVyMisfitx/SurfaceLogVxVyMisfitx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/SurfaceRelVelMisfitx/SurfaceRelVelMisfitx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/ThicknessAbsGradientx/ThicknessAbsGradientx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/ThicknessAbsMisfitx/ThicknessAbsMisfitx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/TimeAdaptx/TimeAdaptx.cpp (modified)
	* issm/trunk-jpl/src/c/objects/Bamg/Metric.h (modified)
	* issm/trunk-jpl/src/c/objects/IoModel.cpp (modified)
	* issm/trunk-jpl/src/c/objects/Patch.cpp (modified)
	* issm/trunk-jpl/src/c/solutions/issm.cpp (modified)
	* issm/trunk-jpl/src/c/toolkits/petsc/patches/PetscMatrixToDoubleMatrix.cpp (modified)
	* issm/trunk-jpl/src/c/toolkits/petsc/patches/PetscVectorToDoubleVector.cpp (modified)
	* issm/trunk-jpl/src/c/toolkits/toolkits.h (modified)
	* issm/trunk-jpl/src/m/model/mesh/triangle.py (added)
	* issm/trunk-jpl/startup.py (modified)
	* issm/trunk-jpl/test/NightlyRun/test101.py (modified)

	Stripped out the following layers:
	METIS: if not running with MPI, ...


Sat, 21 Apr 2012 01:22:48 GMT Eric.Larour [12101]
	* issm/trunk-jpl/src/c/toolkits/petsc/patches/PetscMatrixToDoubleMatrix.cpp (added)
	* issm/trunk-jpl/src/c/toolkits/petsc/patches/PetscVectorToDoubleVector.cpp (added)
	* issm/trunk-jpl/src/c/toolkits/petsc/patches/petscpatches.h (modified)

	Relocation from matlab to petsc patches


Sat, 21 Apr 2012 00:44:23 GMT seroussi [12100]
	* issm/trunk-jpl/test/NightlyRun/test448.m (modified)
	* issm/trunk-jpl/test/NightlyRun/test450.m (modified)
	* issm/trunk-jpl/test/NightlyRun/test452.m (modified)

	no more serial solution


Fri, 20 Apr 2012 22:55:26 GMT Mathieu Morlighem [12099]
	* issm/trunk-jpl/src/dox/issm.dox (modified)

	updated code stats


Fri, 20 Apr 2012 22:44:32 GMT Mathieu Morlighem [12098]
	* issm/trunk-jpl/src/c/modules/Exp2Kmlx/Exp2Kmlx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/TriMeshx/TriMeshx.cpp (modified)
	* issm/trunk-jpl/src/c/shared/Exp/DomainOutlineRead.cpp (modified)
	* issm/trunk-jpl/src/c/shared/Exp/DomainOutlineWrite.cpp (modified)
	* issm/trunk-jpl/src/c/shared/Exp/exp.h (modified)
	* issm/trunk-jpl/src/modules/TriMesh/TriMesh.cpp (modified)

	Removed 'whole' option of DomainOutlineRead (missleading)


Fri, 20 Apr 2012 22:33:08 GMT glperez [12097]
	* issm/trunk-jpl/etc/environment.sh (modified)
	* issm/trunk-jpl/etc/environment_variables.sh (modified)
	* issm/trunk-jpl/externalpackages/android (added)
	* issm/trunk-jpl/externalpackages/android-dev-dir (deleted)
	* issm/trunk-jpl/externalpackages/android/android-emulators (copied)
	* issm/trunk-jpl/externalpackages/android/android-ndk (moved)
	* issm/trunk-jpl/externalpackages/android/android-ndk/install.sh (modified)
	* issm/trunk-jpl/externalpackages/android/android-sdk (moved)
	* issm/trunk-jpl/externalpackages/android/android-sdk/install.sh (modified)

	Modification to environment variables and file strucutre of Android.


Fri, 20 Apr 2012 22:08:29 GMT Mathieu Morlighem [12096]
	* issm/trunk-jpl/src/c/modules/modules.h (modified)

	minor


Fri, 20 Apr 2012 22:06:58 GMT Mathieu Morlighem [12095]
	* issm/trunk-jpl/src/c/modules/TriMeshRiftsx (deleted)

	not needed anymore


Fri, 20 Apr 2012 22:03:00 GMT Mathieu Morlighem [12094]
	* issm/trunk-jpl/src/m/model/mesh/triangle.m (modified)

	Merging TriMesh and TriMeshRifts


Fri, 20 Apr 2012 22:02:46 GMT Mathieu Morlighem [12093]
	* issm/trunk-jpl/src/c/Makefile.am (modified)
	* issm/trunk-jpl/src/c/modules/TriMeshRiftsx/TriMeshRiftsx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/TriMeshRiftsx/TriMeshRiftsx.h (modified)
	* issm/trunk-jpl/src/c/modules/TriMeshx/TriMeshx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/TriMeshx/TriMeshx.h (modified)
	* issm/trunk-jpl/src/c/shared/Exp/DomainOutlineRead.cpp (modified)
	* issm/trunk-jpl/src/modules/TriMesh/TriMesh.cpp (modified)
	* issm/trunk-jpl/src/modules/TriMesh/TriMesh.h (modified)
	* issm/trunk-jpl/src/modules/TriMeshRifts (deleted)
	* issm/trunk-jpl/src/modules/matlab/Makefile.am (modified)

	Merging TriMesh and TriMeshRifts


Fri, 20 Apr 2012 21:51:57 GMT Mathieu Morlighem [12092]
	* issm/trunk-jpl/m4/issm_options.m4 (modified)

	commenting comments


Fri, 20 Apr 2012 21:43:35 GMT Eric.Larour [12091]
	* issm/trunk-jpl/configs/config-arm.sh (added)

	ARM processors configuration file


Fri, 20 Apr 2012 21:39:32 GMT Mathieu Morlighem [12090]
	* issm/trunk-jpl/src/modules/TriMeshNoDensity (deleted)
	* issm/trunk-jpl/src/modules/TriMeshRefine (deleted)
	* issm/trunk-jpl/src/modules/matlab/Makefile.am (modified)

	Removed 2 modules never used


Fri, 20 Apr 2012 21:38:33 GMT Mathieu Morlighem [12089]
	* issm/trunk-jpl/src/m/model/plot/applyoptions.m (modified)
	* issm/trunk-jpl/src/m/model/plot/plot_gridded.m (modified)

	reverted: to be implemented by Chris


Fri, 20 Apr 2012 21:37:15 GMT Mathieu Morlighem [12088]
	* issm/trunk-jpl/src/m/model/collapse.m (modified)
	* issm/trunk-jpl/src/m/model/mesh/meshnodensity.m (deleted)
	* issm/trunk-jpl/src/m/model/mesh/meshrefine.m (deleted)
	* issm/trunk-jpl/src/m/model/plot/applyoptions.m (modified)
	* issm/trunk-jpl/src/m/model/plot/plot_gridded.m (modified)
	* issm/trunk-jpl/src/m/utils/Exp/exptool.m (modified)

	never used (that's 2 modules less)


Fri, 20 Apr 2012 21:29:49 GMT schlegel [12087]
	* issm/trunk-jpl/src/m/model/plot/plot_overlay.m (modified)

	redblue is flipped in overlay


Fri, 20 Apr 2012 21:27:30 GMT Mathieu Morlighem [12086]
	* issm/trunk-jpl/src/c/shared/TriMesh/SplitMeshForRifts.cpp (modified)
	* issm/trunk-jpl/src/c/shared/TriMesh/TriMeshUtils.cpp (modified)

	Fixed checks


Fri, 20 Apr 2012 21:27:19 GMT Mathieu Morlighem [12085]
	* issm/trunk-jpl/src/modules/TriMeshProcessRifts/TriMeshProcessRifts.cpp (modified)

	Fixed WriteData


Fri, 20 Apr 2012 21:21:35 GMT Eric.Larour [12084]
	* issm/trunk-jpl/externalpackages/android-ndk/install.sh (modified)

	Minor bug


Fri, 20 Apr 2012 21:07:05 GMT Eric.Larour [12083]
	* issm/trunk-jpl/externalpackages/android-sdk/install.sh (modified)

	Minor bug


Fri, 20 Apr 2012 20:51:50 GMT Mathieu Morlighem [12082]
	* issm/trunk-jpl/src/m/model/mesh/triangle.m (modified)

	converting to 'order' to bollean


Fri, 20 Apr 2012 20:49:44 GMT Mathieu Morlighem [12081]
	* issm/trunk-jpl/src/modules/TriMeshProcessRifts/TriMeshProcessRifts.cpp (modified)

	Reorganizing and adding assertion for safety


Fri, 20 Apr 2012 20:49:38 GMT Mathieu Morlighem [12080]
	* issm/trunk-jpl/src/c/shared/TriMesh/SplitMeshForRifts.cpp (modified)
	* issm/trunk-jpl/src/c/shared/TriMesh/TriMeshUtils.cpp (modified)
	* issm/trunk-jpl/src/c/shared/TriMesh/trimesh.h (modified)

	Reorganizing and adding assertion for safety


Fri, 20 Apr 2012 20:49:13 GMT Mathieu Morlighem [12079]
	* issm/trunk-jpl/src/c/shared/Exceptions/exceptions.h (modified)

	revert to private properties


Fri, 20 Apr 2012 20:46:58 GMT Mathieu Morlighem [12078]
	* issm/trunk-jpl/src/c/include/macros.h (modified)
	* issm/trunk-jpl/src/c/matlab/include/matlab_macros.h (modified)
	* issm/trunk-jpl/src/c/shared/Exceptions/Exceptions.cpp (modified)
	* issm/trunk-jpl/src/c/shared/Exceptions/exceptions.h (modified)

	Better error handling for matlab modules


Fri, 20 Apr 2012 15:47:39 GMT Eric.Larour [12077]
	* issm/trunk-jpl/src/py/model/petscversion.py (deleted)

	Superseded by petscversion.2.py


Fri, 20 Apr 2012 15:43:42 GMT Eric.Larour [12076]
	* issm/trunk-jpl/configure.ac (modified)

	Prototype handling of 2.7 vs 3.2 versions of PYTHON scripts


Fri, 20 Apr 2012 15:43:11 GMT Eric.Larour [12075]
	* issm/trunk-jpl/src/Makefile.am (modified)
	* issm/trunk-jpl/src/modules/python/Makefile.am (modified)
	* issm/trunk-jpl/src/py (modified)
	* issm/trunk-jpl/src/py/Makefile.am (added)
	* issm/trunk-jpl/src/py/model (modified)
	* issm/trunk-jpl/src/py/model/Makefile.am (added)
	* issm/trunk-jpl/src/py/model/petscversion.2.py (added)

	Handle version 2 vs 3  for python scripts. Prototype.


Fri, 20 Apr 2012 15:42:01 GMT Eric.Larour [12074]
	* issm/trunk-jpl/src/c/Makefile.am (modified)

	Need to better handle NPY_DEPREACATED_APY between  2.7 and 3.2 PYTHON ...


Fri, 20 Apr 2012 15:41:10 GMT Eric.Larour [12073]
	* issm/trunk-jpl/src/c/python/include/python_macros.h (modified)
	* issm/trunk-jpl/src/c/python/io/FetchPythonData.cpp (modified)

	Adapted PYTHON 3.2 API to PYTHON 2.7 API.


Fri, 20 Apr 2012 15:39:58 GMT Eric.Larour [12072]
	* issm/trunk-jpl/m4/issm_options.m4 (modified)

	Better handling of python versions


Fri, 20 Apr 2012 15:39:29 GMT Mathieu Morlighem [12071]
	* issm/trunk-jpl/src/modules/TriMeshProcessRifts/TriMeshProcessRifts.cpp (modified)
	* issm/trunk-jpl/src/modules/TriMeshRifts/TriMeshRifts.cpp (modified)
	* issm/trunk-jpl/src/modules/TriMeshRifts/TriMeshRifts.h (modified)

	Improved TriMeshRifts, to be merged to TriMesh


Fri, 20 Apr 2012 15:39:09 GMT Mathieu Morlighem [12070]
	* issm/trunk-jpl/src/c/shared/TriMesh/TriMeshUtils.cpp (modified)
	* issm/trunk-jpl/src/c/shared/TriMesh/trimesh.h (modified)

	Added assertion in meshprocessrifts for safety


Fri, 20 Apr 2012 15:10:56 GMT Eric.Larour [12069]
	* issm/trunk-jpl/src/c/python/objects (deleted)

	not needed anymore


Fri, 20 Apr 2012 15:10:13 GMT Mathieu Morlighem [12068]
	* issm/trunk-jpl/src/modules/Chaco/Chaco.cpp (modified)

	Fixed OLD segfault in Chaco


Fri, 20 Apr 2012 14:49:58 GMT Eric.Larour [12067]
	* issm/trunk-jpl/configs/config-macosx64-larour-bothapis.sh (modified)

	Better configuration file, with python version dependency


Fri, 20 Apr 2012 14:49:33 GMT Eric.Larour [12066]
	* issm/trunk-jpl/startup.py (modified)

	Allow python 2 as wrapper


Fri, 20 Apr 2012 14:48:52 GMT Eric.Larour [12065]
	* issm/trunk-jpl/bin (modified)

	Ignore python files


Fri, 20 Apr 2012 14:48:19 GMT Eric.Larour [12064]
	* issm/trunk-jpl/m4/issm_options.m4 (modified)

	Added python version + better formatting of configure help


Fri, 20 Apr 2012 00:13:47 GMT Mathieu Morlighem [12063]
	* issm/trunk-jpl/src/c/modules/TriMeshRiftsx/TriMeshRiftsx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/TriMeshRiftsx/TriMeshRiftsx.h (modified)
	* issm/trunk-jpl/src/c/modules/modules.h (modified)

	Fixed TriMeshRiftsx


Fri, 20 Apr 2012 00:09:39 GMT schlegel [12062]
	* issm/trunk-jpl/src/m/model/plot/northarrow.m (modified)

	allow negative lengths for n. hem


Thu, 19 Apr 2012 23:20:00 GMT Mathieu Morlighem [12061]
	* issm/trunk-jpl/src/c/Makefile.am (modified)
	* issm/trunk-jpl/src/c/modules/TriMeshRiftsx (copied)
	* issm/trunk-jpl/src/c/modules/TriMeshRiftsx/TriMeshRiftsx.cpp (moved)
	* issm/trunk-jpl/src/c/modules/TriMeshRiftsx/TriMeshRiftsx.h (moved)
	* issm/trunk-jpl/src/c/modules/TriMeshx/TriMeshx.cpp (modified)

	Added TriMeshRifts (not working yet)


Thu, 19 Apr 2012 22:55:42 GMT Mathieu Morlighem [12060]
	* issm/trunk-jpl/src/modules/Chaco/Chaco.cpp (modified)
	* issm/trunk-jpl/src/modules/ContourToMesh/ContourToMesh.cpp (modified)
	* issm/trunk-jpl/src/modules/ContourToNodes/ContourToNodes.cpp (modified)
	* issm/trunk-jpl/src/modules/InternalFront/InternalFront.cpp (modified)
	* issm/trunk-jpl/src/modules/InterpFromMesh2d/InterpFromMesh2d.cpp (modified)
	* issm/trunk-jpl/src/modules/InterpFromMeshToMesh2d/InterpFromMeshToMesh2d.cpp (modified)
	* issm/trunk-jpl/src/modules/KMLMeshWrite/KMLMeshWrite.cpp (modified)
	* issm/trunk-jpl/src/modules/MeshPartition/MeshPartition.cpp (modified)
	* issm/trunk-jpl/src/modules/MeshProfileIntersection/MeshProfileIntersection.cpp (modified)
	* issm/trunk-jpl/src/modules/TriMeshProcessRifts/TriMeshProcessRifts.cpp (modified)
	* issm/trunk-jpl/src/modules/TriMeshRefine/TriMeshRefine.cpp (modified)

	do not use Matlab's memory management for internal variable (big
	mistake)


Wed, 18 Apr 2012 23:31:45 GMT Mathieu Morlighem [12059]
	* issm/trunk-jpl/configure.ac (modified)
	* issm/trunk/configure.ac (modified)

	Changing ISSM version number


Wed, 18 Apr 2012 23:18:08 GMT Mathieu Morlighem [12058]
	* issm/trunk-jpl/m4/issm_options.m4 (modified)

	Better error message


Wed, 18 Apr 2012 23:15:56 GMT seroussi [12057]
	* issm/trunk-jpl/configs/config-greenplanet.sh (modified)
	* issm/trunk-jpl/configs/config-pleiades-petsc2.sh (modified)
	* issm/trunk-jpl/configs/config-pleiades.sh (modified)

	option with-serial not used anymore, changed to with-modules


Wed, 18 Apr 2012 23:13:44 GMT seroussi [12056]
	* issm/trunk-jpl/src/c/Makefile.am (modified)
	* issm/trunk-jpl/src/c/modules/TriMeshx/TriMeshx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/TriMeshx/TriMeshx.h (modified)

	fixed compilation on pleiades


Wed, 18 Apr 2012 23:08:42 GMT Mathieu Morlighem [12055]
	* issm/trunk-jpl/etc/environment.csh (modified)

	use ISSM's autotools by default


Wed, 18 Apr 2012 22:41:14 GMT Mathieu Morlighem [12054]
	* issm/trunk-jpl/src/modules/BamgMesher/BamgMesher.cpp (modified)

	reverted bamgmesh and bamggeom


Wed, 18 Apr 2012 22:39:56 GMT Mathieu Morlighem [12053]
	* issm/trunk-jpl/src/modules/BamgMesher/BamgMesher.cpp (modified)

	reverted bamgmesh and bamggeom


Wed, 18 Apr 2012 22:37:59 GMT Mathieu Morlighem [12052]
	* issm/trunk-jpl/src/c/matlab/io/FetchMatlabData.cpp (modified)

	minor


Wed, 18 Apr 2012 22:18:37 GMT Mathieu Morlighem [12051]
	* issm/trunk-jpl/src/c/Container/Options.h (modified)
	* issm/trunk-jpl/src/c/Makefile.am (modified)
	* issm/trunk-jpl/src/c/matlab/Container (deleted)
	* issm/trunk-jpl/src/c/matlab/io/FetchMatlabData.cpp (modified)
	* issm/trunk-jpl/src/c/matlab/io/matlabio.h (modified)

	no more weird constructor for Options, use FetchData


Wed, 18 Apr 2012 22:17:58 GMT Mathieu Morlighem [12050]
	* issm/trunk-jpl/src/modules/Chaco/Chaco.cpp (modified)
	* issm/trunk-jpl/src/modules/ContourToMesh/ContourToMesh.cpp (modified)
	* issm/trunk-jpl/src/modules/ContourToNodes/ContourToNodes.cpp (modified)
	* issm/trunk-jpl/src/modules/InternalFront/InternalFront.cpp (modified)
	* issm/trunk-jpl/src/modules/InterpFromMesh2d/InterpFromMesh2d.cpp (modified)
	* issm/trunk-jpl/src/modules/InterpFromMeshToMesh2d/InterpFromMeshToMesh2d.cpp (modified)
	* issm/trunk-jpl/src/modules/KMLMeshWrite/KMLMeshWrite.cpp (modified)
	* issm/trunk-jpl/src/modules/MeshPartition/MeshPartition.cpp (modified)
	* issm/trunk-jpl/src/modules/MeshProfileIntersection/MeshProfileIntersection.cpp (modified)
	* issm/trunk-jpl/src/modules/TriMeshProcessRifts/TriMeshProcessRifts.cpp (modified)
	* issm/trunk-jpl/src/modules/TriMeshRefine/TriMeshRefine.cpp (modified)

	ALWAYS use Matlab's memory manager in mex modules


Wed, 18 Apr 2012 22:16:17 GMT Mathieu Morlighem [12049]
	* issm/trunk-jpl/src/modules/BamgMesher/BamgMesher.cpp (modified)
	* issm/trunk-jpl/src/modules/Exp2Kml/Exp2Kml.cpp (modified)
	* issm/trunk-jpl/src/modules/KMLFileRead/KMLFileRead.cpp (modified)
	* issm/trunk-jpl/src/modules/KMLMeshWrite/KMLMeshWrite.cpp (modified)
	* issm/trunk-jpl/src/modules/KMLOverlay/KMLOverlay.cpp (modified)
	* issm/trunk-jpl/src/modules/Kml2Exp/Kml2Exp.cpp (modified)
	* issm/trunk-jpl/src/modules/Ll2xy/Ll2xy.cpp (modified)
	* issm/trunk-jpl/src/modules/Shp2Kml/Shp2Kml.cpp (modified)
	* issm/trunk-jpl/src/modules/Xy2ll/Xy2ll.cpp (modified)

	Using FetchData to recover Options


Wed, 18 Apr 2012 21:09:20 GMT habbalf [12048]
	* issm/trunk-jpl/src/m/classes/solver.m (modified)

	Updated solver option struct to allow setting blank solutionTypeEnum ...


Wed, 18 Apr 2012 16:19:11 GMT Eric.Larour [12047]
	* issm/trunk-jpl/test/NightlyRun/test101.py (modified)

	Better syntax


Wed, 18 Apr 2012 16:10:45 GMT Mathieu Morlighem [12046]
	* issm/trunk-jpl/src/c/matlab/io/WriteMatlabData.cpp (modified)

	Fixed matrix transpose


Wed, 18 Apr 2012 15:01:28 GMT Mathieu Morlighem [12045]
	* issm/trunk-jpl/src/modules/BamgMesher/BamgMesher.cpp (modified)

	minor


Wed, 18 Apr 2012 14:58:50 GMT Mathieu Morlighem [12044]
	* issm/trunk-jpl/src/modules/BamgConvertMesh/BamgConvertMesh.cpp (modified)
	* issm/trunk-jpl/src/modules/BamgMesher/BamgMesher.cpp (modified)

	Fixed Fetch and Write for Bamg objects


Wed, 18 Apr 2012 14:58:33 GMT Mathieu Morlighem [12043]
	* issm/trunk-jpl/src/c/Makefile.am (modified)
	* issm/trunk-jpl/src/c/matlab/io/FetchMatlabData.cpp (modified)
	* issm/trunk-jpl/src/c/matlab/io/WriteMatlabData.cpp (modified)
	* issm/trunk-jpl/src/c/matlab/io/matlabio.h (modified)
	* issm/trunk-jpl/src/c/matlab/objects (deleted)
	* issm/trunk-jpl/src/c/objects/Bamg/BamgGeom.h (modified)
	* issm/trunk-jpl/src/c/objects/Bamg/BamgMesh.cpp (modified)
	* issm/trunk-jpl/src/c/objects/Bamg/BamgMesh.h (modified)
	* issm/trunk-jpl/src/c/objects/Bamg/BamgOpts.h (modified)

	Fixed Fetch and Write for Bamg objects


Wed, 18 Apr 2012 08:02:47 GMT Mathieu Morlighem [12042]
	* issm/trunk-jpl/src/py/model/display/fielddisplay.rest (deleted)

	cleaning up


Wed, 18 Apr 2012 03:26:10 GMT Mathieu Morlighem [12041]
	* issm/trunk-jpl/src/c/matlab/io/WriteMatlabData.cpp (modified)

	minor fix


Wed, 18 Apr 2012 03:14:35 GMT Mathieu Morlighem [12040]
	* issm/trunk-jpl/src/c/matlab/io/WriteMatlabData.cpp (modified)

	WriteMatlabData should always use Matlab's memory manager


Wed, 18 Apr 2012 02:50:16 GMT Eric.Larour [12039]
	* issm/trunk-jpl/src/m/classes (modified)
	* issm/trunk-jpl/src/m/classes/clusters (modified)
	* issm/trunk-jpl/startup.py (modified)

	Adjusting startup.py for new location of python scripts


Wed, 18 Apr 2012 02:49:03 GMT Eric.Larour [12038]
	* issm/trunk-jpl/src/m/classes/autodiff.py (added)
	* issm/trunk-jpl/src/m/classes/balancethickness.py (added)
	* issm/trunk-jpl/src/m/classes/basalforcings.py (added)
	* issm/trunk-jpl/src/m/classes/clusters/generic.py (added)
	* issm/trunk-jpl/src/m/classes/clusters/none.py (added)
	* issm/trunk-jpl/src/m/classes/constants.py (added)
	* issm/trunk-jpl/src/m/classes/debug.py (added)
	* issm/trunk-jpl/src/m/classes/diagnostic.py (added)
	* issm/trunk-jpl/src/m/classes/flaim.py (added)
	* issm/trunk-jpl/src/m/classes/flowequation.py (added)
	* issm/trunk-jpl/src/m/classes/friction.py (added)
	* issm/trunk-jpl/src/m/classes/geometry.py (added)
	* issm/trunk-jpl/src/m/classes/groundingline.py (added)
	* issm/trunk-jpl/src/m/classes/hydrology.py (added)
	* issm/trunk-jpl/src/m/classes/initialization.py (added)
	* issm/trunk-jpl/src/m/classes/inversion.py (added)
	* issm/trunk-jpl/src/m/classes/mask.py (added)
	* issm/trunk-jpl/src/m/classes/materials.py (added)
	* issm/trunk-jpl/src/m/classes/mesh.py (added)
	* issm/trunk-jpl/src/m/classes/miscellaneous.py (added)
	* issm/trunk-jpl/src/m/classes/model.py (added)
	* issm/trunk-jpl/src/m/classes/pairoptions.py (added)
	* issm/trunk-jpl/src/m/classes/private.py (added)
	* issm/trunk-jpl/src/m/classes/prognostic.py (added)
	* issm/trunk-jpl/src/m/classes/qmu.py (added)
	* issm/trunk-jpl/src/m/classes/radaroverlay.py (added)
	* issm/trunk-jpl/src/m/classes/rifts.py (added)
	* issm/trunk-jpl/src/m/classes/settings.py (added)
	* issm/trunk-jpl/src/m/classes/solver.py (added)
	* issm/trunk-jpl/src/m/classes/steadystate.py (added)
	* issm/trunk-jpl/src/m/classes/surfaceforcings.py (added)
	* issm/trunk-jpl/src/m/classes/thermal.py (added)
	* issm/trunk-jpl/src/m/classes/timestepping.py (added)
	* issm/trunk-jpl/src/m/classes/transient.py (added)
	* issm/trunk-jpl/src/m/classes/verbose.py (added)
	* issm/trunk-jpl/src/py/classes (deleted)

	Moved python classes to matlab classes


Wed, 18 Apr 2012 02:04:15 GMT Mathieu Morlighem [12037]
	* issm/trunk-jpl/src/c/matlab/io/WriteMatlabData.cpp (modified)

	Allocating matlab's variable using Matlab's memory manager


Wed, 18 Apr 2012 01:02:07 GMT Eric.Larour [12036]
	* issm/trunk-jpl/startup.py (modified)

	Last change from modules to mex


Wed, 18 Apr 2012 00:59:46 GMT Eric.Larour [12035]
	* issm/trunk-jpl/configure.ac (modified)
	* issm/trunk-jpl/etc/environment.sh (modified)

	Changing from mex to modules