#
# ChangeLog for /
#
# Generated by Trac 1.4.3
# 05/20/25 08:25:03

Sun, 25 Mar 2012 18:12:41 GMT Eric.Larour [11794]
	* issm/trunk-jpl/src/py/classes/autodiff.py (added)
	* issm/trunk-jpl/src/py/classes/flaim.py (added)
	* issm/trunk-jpl/src/py/classes/groundingline.py (added)
	* issm/trunk-jpl/src/py/classes/hydrology.py (added)
	* issm/trunk-jpl/src/py/classes/inversion.py (added)
	* issm/trunk-jpl/src/py/classes/model.py (modified)
	* issm/trunk-jpl/src/py/classes/prognostic.py (added)
	* issm/trunk-jpl/src/py/classes/steadystate.py (added)
	* issm/trunk-jpl/src/py/classes/thermal.py (added)
	* issm/trunk-jpl/src/py/classes/transient.py (added)
	* issm/trunk-jpl/src/py/model/display/fielddisplay.py (modified)

	New classes in python


Sun, 25 Mar 2012 17:26:19 GMT Eric.Larour [11793]
	* issm/trunk-jpl/src/py/classes/clusters/__pycache__ (deleted)

	Not needed


Sun, 25 Mar 2012 17:25:28 GMT Eric.Larour [11792]
	* issm/trunk-jpl/src/py/classes/balancethickness.py (added)
	* issm/trunk-jpl/src/py/classes/clusters (added)
	* issm/trunk-jpl/src/py/classes/clusters/__pycache__ (added)
	* issm/trunk-jpl/src/py/classes/clusters/generic.py (added)
	* issm/trunk-jpl/src/py/classes/clusters/none.py (added)
	* issm/trunk-jpl/src/py/classes/diagnostic.py (added)
	* issm/trunk-jpl/src/py/classes/model.py (modified)

	Added cluster and diagnostic class


Sun, 25 Mar 2012 16:57:35 GMT Eric.Larour [11791]
	* issm/trunk-jpl/externalpackages/scipy/install-macosx64.sh (modified)
	* issm/trunk-jpl/src/py/model/solvers/asmoptions.py (added)
	* issm/trunk-jpl/src/py/model/solvers/jacobiasmoptions.py (added)
	* issm/trunk-jpl/src/py/model/solvers/jacobicgoptions.py (added)
	* issm/trunk-jpl/src/py/model/solvers/matlaboptions.py (added)
	* issm/trunk-jpl/src/py/model/solvers/soroptions.py (added)
	* issm/trunk-jpl/src/py/model/solvers/stokesoptions.py (added)
	* issm/trunk-jpl/startup.py (modified)

	Added all solvers


Sun, 25 Mar 2012 16:45:45 GMT Eric.Larour [11790]
	* issm/trunk-jpl/src/py/classes/solver.py (modified)
	* issm/trunk-jpl/src/py/model (modified)
	* issm/trunk-jpl/src/py/model/petscversion.py (added)
	* issm/trunk-jpl/src/py/model/solvers (modified)
	* issm/trunk-jpl/src/py/model/solvers/iluasmoptions.py (modified)
	* issm/trunk-jpl/src/py/model/solvers/mumpsoptions.py (modified)

	Finished python solver class


Sun, 25 Mar 2012 07:27:50 GMT Eric.Larour [11789]
	* issm/trunk-jpl/src/py/model/display/fielddisplay.py (modified)
	* issm/trunk-jpl/src/py/model/solvers (added)
	* issm/trunk-jpl/src/py/model/solvers/iluasmoptions.py (added)
	* issm/trunk-jpl/src/py/model/solvers/mumpsoptions.py (added)
	* issm/trunk-jpl/src/py/utils (added)
	* issm/trunk-jpl/src/py/utils/OS (added)
	* issm/trunk-jpl/src/py/utils/OS/ismumps.py (added)
	* issm/trunk-jpl/src/py/utils/Shell (added)
	* issm/trunk-jpl/src/py/utils/Shell/issmtier.py (added)

	Improving solver class


Sun, 25 Mar 2012 07:26:14 GMT Eric.Larour [11788]
	* issm/trunk-jpl/src/py/classes (modified)
	* issm/trunk-jpl/src/py/classes/pairoptions.py (added)
	* issm/trunk-jpl/src/py/classes/solver.py (modified)

	New pairoptions python class + solver class


Sat, 24 Mar 2012 17:27:17 GMT Eric.Larour [11787]
	* issm/trunk-jpl/src/py/README (modified)
	* issm/trunk-jpl/src/py/classes/basalforcings.py (added)
	* issm/trunk-jpl/src/py/classes/constants.py (added)
	* issm/trunk-jpl/src/py/classes/debug.py (added)
	* issm/trunk-jpl/src/py/classes/flowequation.py (added)
	* issm/trunk-jpl/src/py/classes/friction.py (added)
	* issm/trunk-jpl/src/py/classes/geometry.py (added)
	* issm/trunk-jpl/src/py/classes/initialization.py (added)
	* issm/trunk-jpl/src/py/classes/mask.py (added)
	* issm/trunk-jpl/src/py/classes/materials.py (added)
	* issm/trunk-jpl/src/py/classes/mesh.py (modified)
	* issm/trunk-jpl/src/py/classes/model.py (modified)
	* issm/trunk-jpl/src/py/classes/rifts.py (added)
	* issm/trunk-jpl/src/py/classes/settings.py (added)
	* issm/trunk-jpl/src/py/classes/solver.py (added)
	* issm/trunk-jpl/src/py/classes/surfaceforcings.py (added)
	* issm/trunk-jpl/src/py/classes/timestepping.py (added)
	* issm/trunk-jpl/src/py/classes/verbose.py (added)
	* issm/trunk-jpl/src/py/model (added)
	* issm/trunk-jpl/src/py/model/display (added)
	* issm/trunk-jpl/src/py/model/display/fielddisplay.py (added)
	* issm/trunk-jpl/src/py/model/display/fielddisplay.rest (added)
	* issm/trunk-jpl/src/py/modules/TriMesh/Makefile (modified)
	* issm/trunk-jpl/src/py/modules/hello/Makefile (modified)
	* issm/trunk-jpl/startup.py (modified)

	Create python model and subclasses


Sat, 24 Mar 2012 17:21:51 GMT Eric.Larour [11786]
	* issm/trunk-jpl/scripts/issmconfiguration.sh (added)

	Pick up configs files and give the choice to reconfigure ISSM


Fri, 23 Mar 2012 21:44:31 GMT cborstad [11785]
	* issm/trunk-jpl/src/m/model/plot/plot_tensor.m (modified)

	tensor components now in md.results


Fri, 23 Mar 2012 21:39:26 GMT Eric.Larour [11784]
	* issm/trunk-jpl/externalpackages/nose (added)
	* issm/trunk-jpl/externalpackages/nose/install-macosx64sh (added)

	nose package, needed for numpy and scipy


Fri, 23 Mar 2012 21:26:29 GMT cborstad [11783]
	* issm/branches/trunk-jpl-damage/src/m/model/plot/plot_tensor.m (modified)

	tensor components now in md.results


Fri, 23 Mar 2012 21:14:15 GMT Eric.Larour [11782]
	* issm/trunk-jpl/externalpackages/scipy (added)
	* issm/trunk-jpl/externalpackages/scipy/README (added)
	* issm/trunk-jpl/externalpackages/scipy/install-macosx64.sh (added)

	Python scipy package


Thu, 22 Mar 2012 23:59:45 GMT Mathieu Morlighem [11781]
	* issm/trunk-jpl/src/m/model/plot/plot_overlay.m (modified)

	Added possibility of changing radar background from black to white


Thu, 22 Mar 2012 23:58:01 GMT Mathieu Morlighem [11780]
	* issm/trunk-jpl/src/m/model/plot/plot_contour.m (modified)

	Fixing contour when log is activated


Thu, 22 Mar 2012 21:54:21 GMT Mathieu Morlighem [11779]
	* issm/trunk/src/m/model/parameterization/parameterize.m (modified)

	RE-added catch statement


Thu, 22 Mar 2012 21:45:29 GMT lemorzad [11778]
	* issm/trunk/src/c/modules/PositiveDegreeDayx/PositiveDegreeDayx.cpp (modified)
	* issm/trunk/src/c/objects/Elements/Element.h (modified)
	* issm/trunk/src/c/objects/Elements/Penta.cpp (modified)
	* issm/trunk/src/c/objects/Elements/Penta.h (modified)
	* issm/trunk/src/c/objects/Elements/Tria.cpp (modified)
	* issm/trunk/src/c/objects/Elements/Tria.h (modified)
	* issm/trunk/src/m/model/parameterization/parameterize.m (modified)

	ton message


Thu, 22 Mar 2012 15:08:37 GMT Mathieu Morlighem [11777]
	* issm/trunk-jpl/src/c/objects/Numerics/Matrix.cpp (modified)

	forgot to return output in Duplicate


Thu, 22 Mar 2012 05:31:54 GMT Eric.Larour [11776]
	* issm/trunk-jpl/cron/configs/linux64_larour_gsl (modified)

	Reducing test decks


Thu, 22 Mar 2012 05:29:42 GMT Eric.Larour [11775]
	* issm/trunk-jpl/cron/configs/linux64_larour_gsl (added)

	Nightly run configuration to test GSL support


Thu, 22 Mar 2012 05:26:36 GMT Eric.Larour [11774]
	* issm/trunk-jpl/src/m/utils/Exp/manipulation (modified)
	* issm/trunk-jpl/src/m/utils/Exp/readwrite (modified)

	Ignoring Makefile.in


Thu, 22 Mar 2012 05:24:57 GMT Eric.Larour [11773]
	* issm/trunk-jpl/externalpackages/gsl/install-linux64-murdo.sh (added)

	Needed for murdo


Wed, 21 Mar 2012 22:23:17 GMT cborstad [11772]
	* issm/trunk-jpl/test/NightlyRun/test140.m (modified)

	updated Waterfraction tolerance


Wed, 21 Mar 2012 22:01:34 GMT glperez [11771]
	* issm/trunk-jpl/src/android/HelloWorldProject/build.xml (modified)
	* issm/trunk-jpl/src/android/HelloWorldProject/gen (added)
	* issm/trunk-jpl/src/android/HelloWorldProject/gen/R.java.d (added)
	* issm/trunk-jpl/src/android/HelloWorldProject/gen/com (added)
	* issm/trunk-jpl/src/android/HelloWorldProject/gen/com/example (added)
	* issm/trunk-jpl/src/android/HelloWorldProject/gen/com/example/helloworld (added)
	* issm/trunk-jpl/src/android/HelloWorldProject/gen/com/example/helloworld/R.java (added)
	* issm/trunk-jpl/src/android/HelloWorldProject/local.properties (deleted)
	* issm/trunk-jpl/src/android/HelloWorldProject/makefile (added)
	* issm/trunk-jpl/src/android/two-libs (added)
	* issm/trunk-jpl/src/android/two-libs/AndroidManifest.xml (added)
	* issm/trunk-jpl/src/android/two-libs/bin (added)
	* issm/trunk-jpl/src/android/two-libs/bin/build.prop (added)
	* issm/trunk-jpl/src/android/two-libs/bin/classes (added)
	* issm/trunk-jpl/src/android/two-libs/bin/classes.dex (added)
	* issm/trunk-jpl/src/android/two-libs/bin/classes.dex.d (added)
	* issm/trunk-jpl/src/android/two-libs/bin/classes/com (added)
	* issm/trunk-jpl/src/android/two-libs/bin/classes/com/example (added)
	* issm/trunk-jpl/src/android/two-libs/bin/classes/com/example/twolibs (added)
	* issm/trunk-jpl/src/android/two-libs/bin/classes/com/example/twolibs/R$attr.class (added)
	* issm/trunk-jpl/src/android/two-libs/bin/classes/com/example/twolibs/R$string.class (added)
	* issm/trunk-jpl/src/android/two-libs/bin/classes/com/example/twolibs/R.class (added)
	* issm/trunk-jpl/src/android/two-libs/bin/classes/com/example/twolibs/TwoLibs.class (added)
	* issm/trunk-jpl/src/android/two-libs/bin/res (added)
	* issm/trunk-jpl/src/android/two-libs/bin/two-libs-debug-unaligned.apk (added)
	* issm/trunk-jpl/src/android/two-libs/bin/two-libs-debug-unaligned.apk.d (added)
	* issm/trunk-jpl/src/android/two-libs/bin/two-libs-debug.apk (added)
	* issm/trunk-jpl/src/android/two-libs/bin/two-libs.ap_ (added)
	* issm/trunk-jpl/src/android/two-libs/bin/two-libs.ap_.d (added)
	* issm/trunk-jpl/src/android/two-libs/build.xml (added)
	* issm/trunk-jpl/src/android/two-libs/gen (added)
	* issm/trunk-jpl/src/android/two-libs/gen/R.java.d (added)
	* issm/trunk-jpl/src/android/two-libs/gen/com (added)
	* issm/trunk-jpl/src/android/two-libs/gen/com/example (added)
	* issm/trunk-jpl/src/android/two-libs/gen/com/example/twolibs (added)
	* issm/trunk-jpl/src/android/two-libs/gen/com/example/twolibs/R.java (added)
	* issm/trunk-jpl/src/android/two-libs/jni (added)
	* issm/trunk-jpl/src/android/two-libs/jni/Android.mk (added)
	* issm/trunk-jpl/src/android/two-libs/jni/first.c (added)
	* issm/trunk-jpl/src/android/two-libs/jni/first.h (added)
	* issm/trunk-jpl/src/android/two-libs/jni/second.c (added)
	* issm/trunk-jpl/src/android/two-libs/libs (added)
	* issm/trunk-jpl/src/android/two-libs/libs/armeabi (added)
	* issm/trunk-jpl/src/android/two-libs/obj (added)
	* issm/trunk-jpl/src/android/two-libs/obj/local (added)
	* issm/trunk-jpl/src/android/two-libs/obj/local/armeabi (added)
	* issm/trunk-jpl/src/android/two-libs/obj/local/armeabi/objs (added)
	* issm/trunk-jpl/src/android/two-libs/obj/local/armeabi/objs/twolib-first (added)
	* issm/trunk-jpl/src/android/two-libs/obj/local/armeabi/objs/twolib-first/first.o.d (added)
	* issm/trunk-jpl/src/android/two-libs/obj/local/armeabi/objs/twolib-second (added)
	* issm/trunk-jpl/src/android/two-libs/obj/local/armeabi/objs/twolib-second/second.o.d (added)
	* issm/trunk-jpl/src/android/two-libs/proguard.cfg (added)
	* issm/trunk-jpl/src/android/two-libs/project.properties (added)
	* issm/trunk-jpl/src/android/two-libs/res (added)
	* issm/trunk-jpl/src/android/two-libs/res/values (added)
	* issm/trunk-jpl/src/android/two-libs/res/values/strings.xml (added)
	* issm/trunk-jpl/src/android/two-libs/src (added)
	* issm/trunk-jpl/src/android/two-libs/src/com (added)
	* issm/trunk-jpl/src/android/two-libs/src/com/example (added)
	* issm/trunk-jpl/src/android/two-libs/src/com/example/twolibs (added)
	* issm/trunk-jpl/src/android/two-libs/src/com/example/twolibs/TwoLibs.java (added)
	* issm/trunk-jpl/src/android/two-libs/tests (added)
	* issm/trunk-jpl/src/android/two-libs/tests/AndroidManifest.xml (added)
	* issm/trunk-jpl/src/android/two-libs/tests/default.properties (added)
	* issm/trunk-jpl/src/android/two-libs/tests/src (added)
	* issm/trunk-jpl/src/android/two-libs/tests/src/com (added)
	* issm/trunk-jpl/src/android/two-libs/tests/src/com/example (added)
	* issm/trunk-jpl/src/android/two-libs/tests/src/com/example/TwoLib (added)
	* issm/trunk-jpl/src/android/two-libs/tests/src/com/example/TwoLib/TwoLibTest.java (added)

	Added the two-libs project and makefile for helloworld.


Wed, 21 Mar 2012 21:27:45 GMT cborstad [11770]
	* issm/meetings (added)

	added directory for uploading docs relevant to the bi-weekly meetings


Wed, 21 Mar 2012 20:26:01 GMT Mathieu Morlighem [11769]
	* issm/trunk-jpl/src/c/objects/Numerics/Vector.cpp (modified)

	cosmetics


Wed, 21 Mar 2012 18:56:24 GMT Eric.Larour [11768]
	* issm/trunk-jpl/configs/config-linux64-murdo-nopetsc.sh (added)

	Trying nightly runs for gsl configuration


Wed, 21 Mar 2012 18:04:10 GMT Mathieu Morlighem [11767]
	* issm/trunk-jpl/externalpackages/metis/configs/4.0/altix64/Makefile.in.patch (modified)
	* issm/trunk-jpl/externalpackages/metis/configs/4.0/cosmos/Makefile.in.patch (modified)
	* issm/trunk-jpl/externalpackages/metis/configs/4.0/greenplanet/Makefile.in.patch (modified)
	* issm/trunk-jpl/externalpackages/metis/configs/4.0/macosx32/Makefile.in.patch (modified)
	* issm/trunk-jpl/externalpackages/metis/configs/4.0/macosx64/Makefile.in.patch (modified)
	* issm/trunk-jpl/externalpackages/metis/configs/4.0/pleiades/Makefile.in.patch (modified)
	* issm/trunk-jpl/externalpackages/metis/configs/4.0/win32/Makefile.in.patch (modified)
	* issm/trunk-jpl/externalpackages/metis/configs/4.0/win7/Makefile.in.patch (modified)

	Fixed all patches


Wed, 21 Mar 2012 15:58:55 GMT Mathieu Morlighem [11766]
	* issm/trunk-jpl/externalpackages/metis/configs/4.0/linux64/Makefile.in.patch (modified)
	* issm/trunk-jpl/externalpackages/metis/metis-4.0.patch (modified)

	Fixed linux 64 patch


Wed, 21 Mar 2012 15:45:33 GMT Mathieu Morlighem [11765]
	* issm/trunk-jpl/externalpackages/metis/configs/4.0/linux64/Makefile.in.patch (modified)

	fPIC


Wed, 21 Mar 2012 15:39:44 GMT Mathieu Morlighem [11764]
	* issm/trunk-jpl/externalpackages/metis/configs/4.0/altix64/Makefile.in.patch (modified)
	* issm/trunk-jpl/externalpackages/metis/configs/4.0/cosmos/Makefile.in.patch (modified)
	* issm/trunk-jpl/externalpackages/metis/configs/4.0/greenplanet/Makefile.in.patch (modified)
	* issm/trunk-jpl/externalpackages/metis/configs/4.0/macosx32/Makefile.in.patch (modified)
	* issm/trunk-jpl/externalpackages/metis/configs/4.0/macosx64/Makefile.in.patch (modified)
	* issm/trunk-jpl/externalpackages/metis/configs/4.0/pleiades/Makefile.in.patch (modified)

	Fixed patches to get the right library extensions


Wed, 21 Mar 2012 00:10:36 GMT Mathieu Morlighem [11763]
	* issm/trunk-jpl/src/c/toolkits/matlab/MatlabMatrixToMatrix.cpp (deleted)
	* issm/trunk-jpl/src/c/toolkits/matlab/MatlabVectorToVector.cpp (deleted)
	* issm/trunk-jpl/src/c/toolkits/matlab/matlabincludes.h (modified)

	removed unused functions


Tue, 20 Mar 2012 23:53:42 GMT Eric.Larour [11762]
	* issm/trunk-jpl/src/c/toolkits/issm/SeqMat.cpp (modified)
	* issm/trunk-jpl/src/c/toolkits/issm/SeqVec.cpp (modified)

	More checks on empty matrices and vectors


Tue, 20 Mar 2012 23:53:19 GMT Eric.Larour [11761]
	* issm/trunk-jpl/src/c/toolkits/double/MatlabMatrixToDoubleMatrix.cpp (modified)
	* issm/trunk-jpl/src/c/toolkits/double/MatlabVectorToDoubleVector.cpp (modified)

	More checks on empty matrices and vectors


Tue, 20 Mar 2012 23:52:58 GMT Eric.Larour [11760]
	* issm/trunk-jpl/src/c/modules/Solverx/Solverx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/Solverx/SolverxGsl.cpp (modified)

	More robuts Solverx


Tue, 20 Mar 2012 23:52:26 GMT Eric.Larour [11759]
	* issm/trunk-jpl/src/c/objects/Numerics/Vector.cpp (modified)
	* issm/trunk-jpl/src/c/objects/Numerics/Vector.h (modified)

	Fixed segfaults + bugs


Tue, 20 Mar 2012 23:51:50 GMT Eric.Larour [11758]
	* issm/trunk-jpl/src/c/io/Matlab/FetchMatlabData.cpp (modified)

	Took out segfault, remnant of data references from Cielo


Tue, 20 Mar 2012 23:45:42 GMT Eric.Larour [11757]
	* issm/trunk-jpl/externalpackages/gsl (modified)

	Ignore install and src files


Tue, 20 Mar 2012 22:09:01 GMT seroussi [11756]
	* issm/trunk-jpl/src/m/model/slope.m (modified)

	fixed slope routine (very old way of calling project3d)


Tue, 20 Mar 2012 21:56:03 GMT Mathieu Morlighem [11755]
	* issm/trunk-jpl/src/c/objects/Numerics/Vector.cpp (modified)

	vector cannot be NULL


Tue, 20 Mar 2012 21:13:14 GMT glperez [11754]
	* issm/trunk-jpl/src/android/HelloWorldProject (added)
	* issm/trunk-jpl/src/android/HelloWorldProject/AndroidManifest.xml (added)
	* issm/trunk-jpl/src/android/HelloWorldProject/ant.properties (added)
	* issm/trunk-jpl/src/android/HelloWorldProject/bin (added)
	* issm/trunk-jpl/src/android/HelloWorldProject/build.xml (added)
	* issm/trunk-jpl/src/android/HelloWorldProject/libs (added)
	* issm/trunk-jpl/src/android/HelloWorldProject/local.properties (added)
	* issm/trunk-jpl/src/android/HelloWorldProject/proguard.cfg (added)
	* issm/trunk-jpl/src/android/HelloWorldProject/project.properties (added)
	* issm/trunk-jpl/src/android/HelloWorldProject/res (added)
	* issm/trunk-jpl/src/android/HelloWorldProject/res/drawable-hdpi (added)
	* issm/trunk-jpl/src/android/HelloWorldProject/res/drawable-hdpi/ic_launcher.png (added)
	* issm/trunk-jpl/src/android/HelloWorldProject/res/drawable-ldpi (added)
	* issm/trunk-jpl/src/android/HelloWorldProject/res/drawable-ldpi/ic_launcher.png (added)
	* issm/trunk-jpl/src/android/HelloWorldProject/res/drawable-mdpi (added)
	* issm/trunk-jpl/src/android/HelloWorldProject/res/drawable-mdpi/ic_launcher.png (added)
	* issm/trunk-jpl/src/android/HelloWorldProject/res/layout (added)
	* issm/trunk-jpl/src/android/HelloWorldProject/res/layout/main.xml (added)
	* issm/trunk-jpl/src/android/HelloWorldProject/res/values (added)
	* issm/trunk-jpl/src/android/HelloWorldProject/res/values/strings.xml (added)
	* issm/trunk-jpl/src/android/HelloWorldProject/src (added)
	* issm/trunk-jpl/src/android/HelloWorldProject/src/com (added)
	* issm/trunk-jpl/src/android/HelloWorldProject/src/com/example (added)
	* issm/trunk-jpl/src/android/HelloWorldProject/src/com/example/helloworld (added)
	* issm/trunk-jpl/src/android/HelloWorldProject/src/com/example/helloworld/HelloWorldActivity.java (added)

	Added the simple HelloWorldProject to the Android directory. Makefile ...


Tue, 20 Mar 2012 19:47:14 GMT Eric.Larour [11753]
	* issm/trunk-jpl/externalpackages/geos5 (added)
	* issm/trunk-jpl/externalpackages/geos5/install.sh (added)

	geos-5


Tue, 20 Mar 2012 19:23:13 GMT Eric.Larour [11752]
	* issm/trunk-jpl/etc/environment.sh (modified)
	* issm/trunk-jpl/etc/environment_variables.sh (modified)

	GNU make environment variables


Tue, 20 Mar 2012 19:22:09 GMT Eric.Larour [11751]
	* issm/trunk-jpl/externalpackages/packagemaker (modified)
	* issm/trunk-jpl/externalpackages/petsc (modified)

	Some ignoring of files in svn


Tue, 20 Mar 2012 19:21:01 GMT Eric.Larour [11750]
	* issm/trunk-jpl/externalpackages/packagemaker (added)
	* issm/trunk-jpl/externalpackages/packagemaker/install.sh (added)

	packagemaker soft link


Tue, 20 Mar 2012 19:18:39 GMT Eric.Larour [11749]
	* issm/trunk-jpl/externalpackages/modelE (added)
	* issm/trunk-jpl/externalpackages/modelE/install.sh (added)
	* issm/trunk-jpl/externalpackages/modelE/modelE_AR5_branch.2012.03.13_10.12.21.tgz (added)

	modelE from GISS


Tue, 20 Mar 2012 19:18:00 GMT Eric.Larour [11748]
	* issm/trunk-jpl/externalpackages/gmake (added)
	* issm/trunk-jpl/externalpackages/gmake/install.sh (added)
	* issm/trunk-jpl/externalpackages/gmake/make-3.82.tar.gz (added)

	GNU make


Tue, 20 Mar 2012 19:17:26 GMT Eric.Larour [11747]
	* issm/trunk-jpl/externalpackages/gsl (added)
	* issm/trunk-jpl/externalpackages/gsl/README (added)
	* issm/trunk-jpl/externalpackages/gsl/gsl-1.15.tar.gz (added)
	* issm/trunk-jpl/externalpackages/gsl/install-macosx64.sh (added)

	gsl package


Tue, 20 Mar 2012 19:14:29 GMT Eric.Larour [11746]
	* issm/trunk-jpl/execution (modified)

	Ignore test decks*


Tue, 20 Mar 2012 18:29:28 GMT Mathieu Morlighem [11745]
	* issm/trunk-jpl/src/c/objects/Numerics/Vector.cpp (modified)

	fixed issue with GetSize


Tue, 20 Mar 2012 16:51:35 GMT Mathieu Morlighem [11744]
	* issm/trunk-jpl/src/c/solutions/convergence.cpp (modified)

	no NULL pointer allowed for Vector or Matrix


Tue, 20 Mar 2012 16:51:05 GMT Mathieu Morlighem [11743]
	* issm/trunk-jpl/src/c/objects/Numerics/Matrix.cpp (modified)
	* issm/trunk-jpl/src/c/objects/Numerics/Matrix.h (modified)
	* issm/trunk-jpl/src/c/objects/Numerics/Vector.cpp (modified)
	* issm/trunk-jpl/src/c/objects/Numerics/Vector.h (modified)
	* issm/trunk-jpl/src/c/toolkits/petsc/patches/MatlabMatrixToPetscMatrix.cpp (modified)
	* issm/trunk-jpl/src/c/toolkits/petsc/patches/MatlabVectorToPetscVector.cpp (modified)

	no NULL pointer allowed for Vector or Matrix


Tue, 20 Mar 2012 16:04:46 GMT Mathieu Morlighem [11742]
	* issm/trunk-jpl/src/m/model/extrude.m (modified)

	minor


Tue, 20 Mar 2012 15:27:54 GMT Mathieu Morlighem [11741]
	* issm/trunk-jpl/externalpackages/chaco/chaco.patch (modified)

	reverted chaco installation back to normal (cannot compile on ...


Tue, 20 Mar 2012 14:19:06 GMT Mathieu Morlighem [11740]
	* issm/trunk-jpl/src/m/model/extrude.m (modified)

	Added lat/lon extrusion


Tue, 20 Mar 2012 03:58:58 GMT Eric.Larour [11739]
	* issm/trunk-jpl/src/c/objects/Numerics/Vector.cpp (modified)

	Some legitimate demands if the vector is a NULL pointer


Tue, 20 Mar 2012 03:54:30 GMT Eric.Larour [11738]
	* issm/trunk-jpl/externalpackages/matlab/install.sh (modified)

	reverting


Tue, 20 Mar 2012 03:53:40 GMT Eric.Larour [11737]
	* issm/trunk-jpl/externalpackages/adolc/install.sh (modified)
	* issm/trunk-jpl/externalpackages/chaco/chaco.patch (modified)
	* issm/trunk-jpl/externalpackages/matlab/install.sh (modified)
	* issm/trunk-jpl/externalpackages/mitgcm/install.sh (modified)
	* issm/trunk-jpl/externalpackages/petsc/install-2.3.2-macosx64.sh (added)
	* issm/trunk-jpl/src/c/modules/Solverx/Solverx.cpp (modified)
	* issm/trunk-jpl/src/c/objects/Numerics/Vector.cpp (modified)

	Vector object does not have an M size.


Tue, 20 Mar 2012 03:14:03 GMT Eric.Larour [11736]
	* issm/trunk-jpl/m4/issm_options.m4 (modified)

	Added gsl support + relaxed constraints on presence of PETSC to ...


Tue, 20 Mar 2012 03:12:04 GMT Eric.Larour [11735]
	* issm/trunk-jpl/src/c/Makefile.am (modified)

	Adding gsl support, issm toolkit.


Tue, 20 Mar 2012 03:11:39 GMT Eric.Larour [11734]
	* issm/trunk-jpl/src/c/objects/Numerics/ElementMatrix.cpp (modified)
	* issm/trunk-jpl/src/c/objects/Numerics/ElementVector.cpp (modified)
	* issm/trunk-jpl/src/c/objects/Numerics/Matrix.cpp (modified)
	* issm/trunk-jpl/src/c/objects/Numerics/Matrix.h (modified)
	* issm/trunk-jpl/src/c/objects/Numerics/Vector.cpp (modified)
	* issm/trunk-jpl/src/c/objects/Numerics/Vector.h (modified)

	Hook up new issm toolkit


Tue, 20 Mar 2012 03:11:11 GMT Eric.Larour [11733]
	* issm/trunk-jpl/src/c/toolkits/double/MatlabVectorToDoubleVector.cpp (modified)
	* issm/trunk-jpl/src/c/toolkits/issm (added)
	* issm/trunk-jpl/src/c/toolkits/issm/SeqMat.cpp (added)
	* issm/trunk-jpl/src/c/toolkits/issm/SeqMat.h (added)
	* issm/trunk-jpl/src/c/toolkits/issm/SeqVec.cpp (added)
	* issm/trunk-jpl/src/c/toolkits/issm/SeqVec.h (added)
	* issm/trunk-jpl/src/c/toolkits/issm/issmtoolkit.h (added)
	* issm/trunk-jpl/src/c/toolkits/toolkits.h (modified)

	Adding issm toolkit


Tue, 20 Mar 2012 03:10:30 GMT Eric.Larour [11732]
	* issm/trunk-jpl/configs/config-macosx64-larour-nopetsc.sh (added)

	No dakota, no petsc, to test gsl API


Tue, 20 Mar 2012 03:09:57 GMT Eric.Larour [11731]
	* issm/trunk-jpl/configs/config-macosx64-larour.sh (modified)

	No dakota for now


Tue, 20 Mar 2012 03:09:17 GMT Eric.Larour [11730]
	* issm/trunk-jpl/src/c/shared/Alloc/alloc.cpp (modified)

	Avoid potential API issue when Petsc is absent


Tue, 20 Mar 2012 03:08:16 GMT Eric.Larour [11729]
	* issm/trunk-jpl/src/m/model/solveparallel.m (modified)

	Detect presence of petsc for solving in parallel. Otherwise, run with ...


Tue, 20 Mar 2012 03:07:55 GMT Eric.Larour [11728]
	* issm/trunk-jpl/src/m/model/petscversion.m (modified)

	Added a default petsc version


Tue, 20 Mar 2012 03:07:35 GMT Eric.Larour [11727]
	* issm/trunk-jpl/src/m/utils/OS/ispetsc.m (added)

	Detect petsc compilation in config.h


Tue, 20 Mar 2012 03:07:14 GMT Eric.Larour [11726]
	* issm/trunk-jpl/src/c/modules/Solverx/Solverx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/Solverx/Solverx.h (modified)
	* issm/trunk-jpl/src/c/modules/Solverx/SolverxGsl.cpp (added)

	Added GSL solver


Tue, 20 Mar 2012 03:06:31 GMT Eric.Larour [11725]
	* issm/trunk-jpl/src/c/solutions/convergence.cpp (modified)

	Shield some potentially dangerous API dependency


Tue, 20 Mar 2012 01:16:35 GMT Eric.Larour [11724]
	* issm/trunk-jpl/src/c/solutions/issm.cpp (modified)

	Broader definition of when issm should run in parallel.


Sun, 18 Mar 2012 17:05:33 GMT Eric.Larour [11723]
	* issm/trunk-jpl/src/mex/Makefile.am (modified)

	Add GSL support


Sun, 18 Mar 2012 17:04:29 GMT Eric.Larour [11722]
	* issm/trunk-jpl/etc/environment.sh (modified)
	* issm/trunk-jpl/etc/environment_variables.sh (modified)

	Add GSL support


Sun, 18 Mar 2012 17:01:46 GMT Eric.Larour [11721]
	* issm/trunk-jpl/src/c/shared/Matlab/ModuleBoot.cpp (modified)
	* issm/trunk-jpl/src/c/shared/Matlab/ModuleEnd.cpp (modified)

	Live without Petsc


Fri, 16 Mar 2012 15:36:17 GMT Mathieu Morlighem [11720]
	* issm/trunk-jpl/src/c/objects/Elements/Tria.cpp (modified)
	* issm/trunk-jpl/src/c/objects/objects.h (modified)

	Better error message if input does not have the right length


Thu, 15 Mar 2012 22:17:36 GMT Mathieu Morlighem [11719]
	* issm/trunk-jpl/src/c/modules/ModelProcessorx/Prognostic/UpdateElementsPrognostic.cpp (modified)

	Precipitation not needed for prognostic


Thu, 15 Mar 2012 20:47:10 GMT glperez [11718]
	* issm/trunk-jpl/externalpackages/android-sdk/install.sh (modified)

	Modified the install.sh script of Android-SDK


Thu, 15 Mar 2012 19:07:19 GMT Mathieu Morlighem [11717]
	* issm/trunk-jpl/src/m/utils/Exp/expconcatenate.m (deleted)
	* issm/trunk-jpl/src/m/utils/Exp/expcut.m (deleted)
	* issm/trunk-jpl/src/m/utils/Exp/expselect.m (deleted)

	removing some useless functions


Thu, 15 Mar 2012 00:09:20 GMT Mathieu Morlighem [11716]
	* issm/trunk-jpl/src/c/io/Matlab/FetchMatlabData.cpp (modified)
	* issm/trunk-jpl/src/c/io/Matlab/WriteMatlabData.cpp (modified)
	* issm/trunk-jpl/src/c/modules/Solverx/Solverx.cpp (modified)
	* issm/trunk-jpl/src/c/toolkits/petsc/patches/PetscVectorToMatlabVector.cpp (modified)

	Added support for empty vectors in serial mode


Wed, 14 Mar 2012 22:39:14 GMT Mathieu Morlighem [11715]
	* issm/trunk-jpl/src/c/modules/Solverx/Solverx.cpp (modified)

	fixed problem if uf=NULL


Wed, 14 Mar 2012 22:37:50 GMT Mathieu Morlighem [11714]
	* issm/trunk-jpl/src/c/solutions/convergence.cpp (modified)

	check uf size


Wed, 14 Mar 2012 22:37:29 GMT Mathieu Morlighem [11713]
	* issm/trunk-jpl/src/c/objects/Numerics/Matrix.cpp (modified)
	* issm/trunk-jpl/src/c/objects/Numerics/Vector.cpp (modified)

	Added lots of asserts to avoid nasty segmentation faults


Wed, 14 Mar 2012 22:19:59 GMT Mathieu Morlighem [11712]
	* issm/trunk-jpl/src/c/modules/Solverx/Solverx.cpp (modified)

	Added assert to avoid crash


Wed, 14 Mar 2012 22:05:32 GMT Eric.Larour [11711]
	* issm/trunk-jpl/externalpackages/mitgcm/install.sh (modified)
	* issm/trunk-jpl/externalpackages/mitgcm/notes (added)

	Dimitris notes and updates on MITgcm.


Wed, 14 Mar 2012 21:58:01 GMT Eric.Larour [11710]
	* issm/trunk/externalpackages/mitgcm/notes (added)

	Notes from Dimitris on MITgcm


Wed, 14 Mar 2012 21:56:19 GMT Mathieu Morlighem [11709]
	* issm/trunk-jpl/externalpackages/vim/addons/vim/syntax/c.vim (modified)

	Updated syntax highlighting


Wed, 14 Mar 2012 21:15:28 GMT cborstad [11708]
	* issm/branches/trunk-jpl-damage (modified)
	* issm/branches/trunk-jpl-damage/configs/config-macosx64-larour-ad.sh (modified)
	* issm/branches/trunk-jpl-damage/configs/config-macosx64-larour.sh (modified)
	* issm/branches/trunk-jpl-damage/cron/configs/macosx64_larour_validation (modified)
	* issm/branches/trunk-jpl-damage/m4/issm_options.m4 (modified)
	* issm/branches/trunk-jpl-damage/src/c/Container/Elements.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/Container/Parameters.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/Container/Parameters.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/EnumDefinitions/EnumDefinitions.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/Makefile.am (modified)
	* issm/branches/trunk-jpl-damage/src/c/io/Matlab/FetchMatlabData.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/io/Matlab/WriteMatlabData.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/io/Matlab/matlabio.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/AverageOntoPartitionx/AverageOntoPartitionx.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/ComputeBasalStressx/ComputeBasalStressx.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/ComputeBasalStressx/ComputeBasalStressx.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/ComputeStrainRatex/ComputeStrainRatex.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/ComputeStrainRatex/ComputeStrainRatex.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/ContourToMeshx/ContourToMeshx.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/ContourToMeshx/ContourToMeshx.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/ContourToMeshx/ContourToMeshxt.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/ContourToNodesx/ContourToNodesx.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/ContourToNodesx/ContourToNodesx.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/ControlInputGetGradientx/ControlInputGetGradientx.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/ControlInputGetGradientx/ControlInputGetGradientx.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/ControlInputSetGradientx/ControlInputSetGradientx.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/ControlInputSetGradientx/ControlInputSetGradientx.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/EnumToStringx/EnumToStringx.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/GetVectorFromControlInputsx/GetVectorFromControlInputsx.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/GetVectorFromControlInputsx/GetVectorFromControlInputsx.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/GetVectorFromInputsx/GetVectorFromInputsx.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/GetVectorFromInputsx/GetVectorFromInputsx.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/Gradjx/Gradjx.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/Gradjx/Gradjx.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/GroundinglineMigrationx/GroundinglineMigrationx.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/GroundinglineMigrationx/GroundinglineMigrationx.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/InputUpdateFromVectorDakotax/InputUpdateFromVectorDakotax.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/InputUpdateFromVectorDakotax/InputUpdateFromVectorDakotax.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/InputUpdateFromVectorx/InputUpdateFromVectorx.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/InputUpdateFromVectorx/InputUpdateFromVectorx.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/InterpFromGridToMeshx/InterpFromGridToMeshx.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/InterpFromGridToMeshx/InterpFromGridToMeshx.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/InterpFromMesh2dx/InterpFromMesh2dx.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/InterpFromMesh2dx/InterpFromMesh2dx.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/InterpFromMesh2dx/InterpFromMesh2dxt.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/InterpFromMeshToMesh2dx/InterpFromMeshToMesh2dx.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/InterpFromMeshToMesh3dx/InterpFromMeshToMesh3dx.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/InterpFromMeshToMesh3dx/InterpFromMeshToMesh3dx.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/Orthx/Orthx.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/Orthx/Orthx.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/PointCloudFindNeighborsx/PointCloudFindNeighborsx.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/PointCloudFindNeighborsx/PointCloudFindNeighborsx.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/PointCloudFindNeighborsx/PointCloudFindNeighborsxt.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/Reduceloadx/Reduceloadx.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/SetControlInputsFromVectorx/SetControlInputsFromVectorx.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/SetControlInputsFromVectorx/SetControlInputsFromVectorx.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/Solverx/Solverx.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/Solverx/Solverx.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/StringToEnumx/StringToEnumx.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/SystemMatricesx/SystemMatricesx.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/UpdateVertexPositionsx/UpdateVertexPositionsx.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/ElementResults/BoolElementResult.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/ElementResults/BoolElementResult.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/ElementResults/DoubleElementResult.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/ElementResults/ElementResult.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/ElementResults/PentaP1ElementResult.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/ElementResults/PentaP1ElementResult.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/ElementResults/TriaP1ElementResult.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/ElementResults/TriaP1ElementResult.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Elements/Element.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Elements/Penta.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Elements/Penta.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Elements/Tria.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Elements/Tria.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/ExternalResults/PetscVecExternalResult.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/ExternalResults/PetscVecExternalResult.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/FemModel.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Inputs/BoolInput.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Inputs/BoolInput.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Inputs/ControlInput.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Inputs/ControlInput.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Inputs/DatasetInput.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Inputs/DoubleInput.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Inputs/DoubleInput.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Inputs/Input.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Inputs/IntInput.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Inputs/IntInput.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Inputs/PentaP1Input.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Inputs/PentaP1Input.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Inputs/TransientInput.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Inputs/TransientInput.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Inputs/TriaP1Input.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Inputs/TriaP1Input.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Materials/Material.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Materials/Matice.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Materials/Matice.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Materials/Matpar.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Node.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Node.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Numerics/Matrix.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Numerics/Matrix.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Numerics/Vector.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Numerics/Vector.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Params/BoolParam.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Params/DoubleMatArrayParam.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Params/DoubleMatParam.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Params/DoubleParam.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Params/DoubleVecParam.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Params/FileParam.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Params/IntMatParam.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Params/IntParam.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Params/IntVecParam.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Params/MatrixParam.cpp (copied)
	* issm/branches/trunk-jpl-damage/src/c/objects/Params/MatrixParam.h (copied)
	* issm/branches/trunk-jpl-damage/src/c/objects/Params/Param.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Params/PetscMatParam.cpp (deleted)
	* issm/branches/trunk-jpl-damage/src/c/objects/Params/PetscMatParam.h (deleted)
	* issm/branches/trunk-jpl-damage/src/c/objects/Params/PetscVecParam.cpp (deleted)
	* issm/branches/trunk-jpl-damage/src/c/objects/Params/PetscVecParam.h (deleted)
	* issm/branches/trunk-jpl-damage/src/c/objects/Params/StringArrayParam.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Params/StringParam.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Params/VectorParam.cpp (copied)
	* issm/branches/trunk-jpl-damage/src/c/objects/Params/VectorParam.h (copied)
	* issm/branches/trunk-jpl-damage/src/c/objects/Vertex.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Vertex.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/objects.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/shared/Alloc/alloc.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/shared/Exp/IsInPoly.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/shared/Exp/exp.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/shared/Matlab/ModuleBoot.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/shared/Numerics/OptionsFromAnalysis.cpp (copied)
	* issm/branches/trunk-jpl-damage/src/c/shared/Numerics/PetscOptionsFromAnalysis.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/shared/Numerics/numerics.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/solutions/controltao_core.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/solutions/convergence.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/solutions/gradient_core.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/solutions/issm.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/toolkits/double (copied)
	* issm/branches/trunk-jpl-damage/src/c/toolkits/mpi/patches/DetermineLocalSize.cpp (copied)
	* issm/branches/trunk-jpl-damage/src/c/toolkits/mpi/patches/MPI_Boundariesfromrange.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/toolkits/mpi/patches/MPI_Lowerrow.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/toolkits/mpi/patches/MPI_Upperrow.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/toolkits/mpi/patches/mpipatches.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/toolkits/petsc/patches/ISSMToPetscInsertMode.cpp (copied)
	* issm/branches/trunk-jpl-damage/src/c/toolkits/petsc/patches/ISSMToPetscNormMode.cpp (copied)
	* issm/branches/trunk-jpl-damage/src/c/toolkits/petsc/patches/MatPartition.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/toolkits/petsc/patches/MatToSerial.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/toolkits/petsc/patches/MatlabMatrixToDoubleMatrix.cpp (deleted)
	* issm/branches/trunk-jpl-damage/src/c/toolkits/petsc/patches/MatlabVectorToDoubleVector.cpp (deleted)
	* issm/branches/trunk-jpl-damage/src/c/toolkits/petsc/patches/NewMat.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/toolkits/petsc/patches/NewVec.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/toolkits/petsc/patches/PetscDetermineLocalSize.cpp (deleted)
	* issm/branches/trunk-jpl-damage/src/c/toolkits/petsc/patches/VecToMPISerial.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/toolkits/petsc/patches/petscpatches.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/toolkits/petsc/petscincludes.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/toolkits/plapack/plapackincludes.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/toolkits/toolkits.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/toolkits/toolkitsenums.h (copied)
	* issm/branches/trunk-jpl-damage/src/m/classes/inversion.m (modified)
	* issm/branches/trunk-jpl-damage/src/m/enum/MatrixParamEnum.m (copied)
	* issm/branches/trunk-jpl-damage/src/m/enum/PetscMatParamEnum.m (deleted)
	* issm/branches/trunk-jpl-damage/src/m/enum/PetscVecParamEnum.m (deleted)
	* issm/branches/trunk-jpl-damage/src/m/enum/VectorParamEnum.m (copied)
	* issm/branches/trunk-jpl-damage/src/mex/ComputeBasalStress/ComputeBasalStress.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/mex/ContourToMesh/ContourToMesh.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/mex/ContourToNodes/ContourToNodes.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/mex/ControlInputGetGradient/ControlInputGetGradient.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/mex/CreateNodalConstraints/CreateNodalConstraints.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/mex/GetVectorFromInputs/GetVectorFromInputs.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/mex/Gradj/Gradj.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/mex/InputUpdateFromSolution/InputUpdateFromSolution.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/mex/InterpFromGridToMesh/InterpFromGridToMesh.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/mex/InterpFromMesh2d/InterpFromMesh2d.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/mex/InterpFromMeshToMesh3d/InterpFromMeshToMesh3d.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/mex/Makefile.am (modified)
	* issm/branches/trunk-jpl-damage/src/mex/Mergesolutionfromftog/Mergesolutionfromftog.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/mex/Orth/Orth.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/mex/PointCloudFindNeighbors/PointCloudFindNeighbors.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/mex/Reduceload/Reduceload.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/mex/Reducevectorgtof/Reducevectorgtof.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/mex/Reducevectorgtos/Reducevectorgtos.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/mex/ResetCoordinateSystem/ResetCoordinateSystem.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/mex/Solver/Solver.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/mex/SystemMatrices/SystemMatrices.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/mex/UpdateDynamicConstraints/UpdateDynamicConstraints.cpp (modified)

	merged trunk-jpl through revision 11707 into branches/trunk-jpl-
	damage


Wed, 14 Mar 2012 16:28:47 GMT Mathieu Morlighem [11707]
	* issm/trunk-jpl/src/c/modules/UpdateVertexPositionsx/UpdateVertexPositionsx.cpp (modified)

	moved delete to xdelete for PETSC vec


Wed, 14 Mar 2012 16:26:08 GMT Mathieu Morlighem [11706]
	* issm/trunk-jpl/src/c/solutions/controltao_core.cpp (modified)

	fixed memory leak


Wed, 14 Mar 2012 16:21:15 GMT Eric.Larour [11705]
	* issm/trunk-jpl/src/c/shared/Alloc/alloc.cpp (modified)

	Wrong symbol


Wed, 14 Mar 2012 16:09:05 GMT Mathieu Morlighem [11704]
	* issm/trunk-jpl/src/c/objects/Numerics/Vector.cpp (modified)
	* issm/trunk-jpl/src/c/objects/Numerics/Vector.h (modified)

	Added constructor from PETSc vector


Wed, 14 Mar 2012 16:08:48 GMT Mathieu Morlighem [11703]
	* issm/trunk-jpl/src/c/solutions/controltao_core.cpp (modified)

	updated controltao with new Vector/Matrix interface


Wed, 14 Mar 2012 16:06:41 GMT Mathieu Morlighem [11702]
	* issm/trunk-jpl/src/c/shared/Numerics/OptionsFromAnalysis.cpp (modified)

	wrong string size


Wed, 14 Mar 2012 16:06:26 GMT Mathieu Morlighem [11701]
	* issm/trunk-jpl/src/c/modules/Solverx/Solverx.cpp (modified)

	Fixed seg fault


Wed, 14 Mar 2012 15:55:03 GMT Mathieu Morlighem [11700]
	* issm/trunk-jpl/src/mex/Reducevectorgtof/Reducevectorgtof.cpp (modified)

	cosmetics


Wed, 14 Mar 2012 15:17:48 GMT Mathieu Morlighem [11699]
	* issm/trunk-jpl/src/c/modules/Reduceloadx/Reduceloadx.cpp (modified)

	minor


Wed, 14 Mar 2012 03:01:58 GMT Eric.Larour [11698]
	* issm/trunk-jpl/cron/configs/macosx64_larour_validation (modified)

	Skip bamg


Wed, 14 Mar 2012 03:01:27 GMT Eric.Larour [11697]
	* issm/trunk-jpl/configs/config-macosx64-larour-ad.sh (modified)
	* issm/trunk-jpl/configs/config-macosx64-larour.sh (modified)

	run without petsc


Wed, 14 Mar 2012 03:00:50 GMT Eric.Larour [11696]
	* issm/trunk-jpl/m4/issm_options.m4 (modified)

	More leeway in terms of running without petsc support


Wed, 14 Mar 2012 02:59:59 GMT Eric.Larour [11695]
	* issm/trunk-jpl/src/c/Container/Elements.cpp (modified)
	* issm/trunk-jpl/src/c/Container/Parameters.cpp (modified)
	* issm/trunk-jpl/src/c/Container/Parameters.h (modified)
	* issm/trunk-jpl/src/c/EnumDefinitions/EnumDefinitions.h (modified)
	* issm/trunk-jpl/src/c/Makefile.am (modified)
	* issm/trunk-jpl/src/c/io/Matlab/FetchMatlabData.cpp (modified)
	* issm/trunk-jpl/src/c/io/Matlab/WriteMatlabData.cpp (modified)
	* issm/trunk-jpl/src/c/io/Matlab/matlabio.h (modified)
	* issm/trunk-jpl/src/c/modules/AverageOntoPartitionx/AverageOntoPartitionx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/ComputeBasalStressx/ComputeBasalStressx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/ComputeBasalStressx/ComputeBasalStressx.h (modified)
	* issm/trunk-jpl/src/c/modules/ComputeStrainRatex/ComputeStrainRatex.cpp (modified)
	* issm/trunk-jpl/src/c/modules/ComputeStrainRatex/ComputeStrainRatex.h (modified)
	* issm/trunk-jpl/src/c/modules/ContourToMeshx/ContourToMeshx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/ContourToMeshx/ContourToMeshx.h (modified)
	* issm/trunk-jpl/src/c/modules/ContourToMeshx/ContourToMeshxt.cpp (modified)
	* issm/trunk-jpl/src/c/modules/ContourToNodesx/ContourToNodesx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/ContourToNodesx/ContourToNodesx.h (modified)
	* issm/trunk-jpl/src/c/modules/ControlInputGetGradientx/ControlInputGetGradientx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/ControlInputGetGradientx/ControlInputGetGradientx.h (modified)
	* issm/trunk-jpl/src/c/modules/ControlInputSetGradientx/ControlInputSetGradientx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/ControlInputSetGradientx/ControlInputSetGradientx.h (modified)
	* issm/trunk-jpl/src/c/modules/EnumToStringx/EnumToStringx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/GetVectorFromControlInputsx/GetVectorFromControlInputsx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/GetVectorFromControlInputsx/GetVectorFromControlInputsx.h (modified)
	* issm/trunk-jpl/src/c/modules/GetVectorFromInputsx/GetVectorFromInputsx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/GetVectorFromInputsx/GetVectorFromInputsx.h (modified)
	* issm/trunk-jpl/src/c/modules/Gradjx/Gradjx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/Gradjx/Gradjx.h (modified)
	* issm/trunk-jpl/src/c/modules/GroundinglineMigrationx/GroundinglineMigrationx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/GroundinglineMigrationx/GroundinglineMigrationx.h (modified)
	* issm/trunk-jpl/src/c/modules/InputUpdateFromVectorDakotax/InputUpdateFromVectorDakotax.cpp (modified)
	* issm/trunk-jpl/src/c/modules/InputUpdateFromVectorDakotax/InputUpdateFromVectorDakotax.h (modified)
	* issm/trunk-jpl/src/c/modules/InputUpdateFromVectorx/InputUpdateFromVectorx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/InputUpdateFromVectorx/InputUpdateFromVectorx.h (modified)
	* issm/trunk-jpl/src/c/modules/InterpFromGridToMeshx/InterpFromGridToMeshx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/InterpFromGridToMeshx/InterpFromGridToMeshx.h (modified)
	* issm/trunk-jpl/src/c/modules/InterpFromMesh2dx/InterpFromMesh2dx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/InterpFromMesh2dx/InterpFromMesh2dx.h (modified)
	* issm/trunk-jpl/src/c/modules/InterpFromMesh2dx/InterpFromMesh2dxt.cpp (modified)
	* issm/trunk-jpl/src/c/modules/InterpFromMeshToMesh2dx/InterpFromMeshToMesh2dx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/InterpFromMeshToMesh3dx/InterpFromMeshToMesh3dx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/InterpFromMeshToMesh3dx/InterpFromMeshToMesh3dx.h (modified)
	* issm/trunk-jpl/src/c/modules/Orthx/Orthx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/Orthx/Orthx.h (modified)
	* issm/trunk-jpl/src/c/modules/PointCloudFindNeighborsx/PointCloudFindNeighborsx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/PointCloudFindNeighborsx/PointCloudFindNeighborsx.h (modified)
	* issm/trunk-jpl/src/c/modules/PointCloudFindNeighborsx/PointCloudFindNeighborsxt.cpp (modified)
	* issm/trunk-jpl/src/c/modules/SetControlInputsFromVectorx/SetControlInputsFromVectorx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/SetControlInputsFromVectorx/SetControlInputsFromVectorx.h (modified)
	* issm/trunk-jpl/src/c/modules/Solverx/Solverx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/Solverx/Solverx.h (modified)
	* issm/trunk-jpl/src/c/modules/StringToEnumx/StringToEnumx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/SystemMatricesx/SystemMatricesx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/UpdateVertexPositionsx/UpdateVertexPositionsx.cpp (modified)
	* issm/trunk-jpl/src/c/objects/ElementResults/BoolElementResult.cpp (modified)
	* issm/trunk-jpl/src/c/objects/ElementResults/BoolElementResult.h (modified)
	* issm/trunk-jpl/src/c/objects/ElementResults/DoubleElementResult.h (modified)
	* issm/trunk-jpl/src/c/objects/ElementResults/ElementResult.h (modified)
	* issm/trunk-jpl/src/c/objects/ElementResults/PentaP1ElementResult.cpp (modified)
	* issm/trunk-jpl/src/c/objects/ElementResults/PentaP1ElementResult.h (modified)
	* issm/trunk-jpl/src/c/objects/ElementResults/TriaP1ElementResult.cpp (modified)
	* issm/trunk-jpl/src/c/objects/ElementResults/TriaP1ElementResult.h (modified)
	* issm/trunk-jpl/src/c/objects/Elements/Element.h (modified)
	* issm/trunk-jpl/src/c/objects/Elements/Penta.cpp (modified)
	* issm/trunk-jpl/src/c/objects/Elements/Penta.h (modified)
	* issm/trunk-jpl/src/c/objects/Elements/Tria.cpp (modified)
	* issm/trunk-jpl/src/c/objects/Elements/Tria.h (modified)
	* issm/trunk-jpl/src/c/objects/ExternalResults/PetscVecExternalResult.cpp (modified)
	* issm/trunk-jpl/src/c/objects/ExternalResults/PetscVecExternalResult.h (modified)
	* issm/trunk-jpl/src/c/objects/FemModel.cpp (modified)
	* issm/trunk-jpl/src/c/objects/Inputs/BoolInput.cpp (modified)
	* issm/trunk-jpl/src/c/objects/Inputs/BoolInput.h (modified)
	* issm/trunk-jpl/src/c/objects/Inputs/ControlInput.cpp (modified)
	* issm/trunk-jpl/src/c/objects/Inputs/ControlInput.h (modified)
	* issm/trunk-jpl/src/c/objects/Inputs/DatasetInput.h (modified)
	* issm/trunk-jpl/src/c/objects/Inputs/DoubleInput.cpp (modified)
	* issm/trunk-jpl/src/c/objects/Inputs/DoubleInput.h (modified)
	* issm/trunk-jpl/src/c/objects/Inputs/Input.h (modified)
	* issm/trunk-jpl/src/c/objects/Inputs/IntInput.cpp (modified)
	* issm/trunk-jpl/src/c/objects/Inputs/IntInput.h (modified)
	* issm/trunk-jpl/src/c/objects/Inputs/PentaP1Input.cpp (modified)
	* issm/trunk-jpl/src/c/objects/Inputs/PentaP1Input.h (modified)
	* issm/trunk-jpl/src/c/objects/Inputs/TransientInput.cpp (modified)
	* issm/trunk-jpl/src/c/objects/Inputs/TransientInput.h (modified)
	* issm/trunk-jpl/src/c/objects/Inputs/TriaP1Input.cpp (modified)
	* issm/trunk-jpl/src/c/objects/Inputs/TriaP1Input.h (modified)
	* issm/trunk-jpl/src/c/objects/Materials/Material.h (modified)
	* issm/trunk-jpl/src/c/objects/Materials/Matice.cpp (modified)
	* issm/trunk-jpl/src/c/objects/Materials/Matice.h (modified)
	* issm/trunk-jpl/src/c/objects/Materials/Matpar.h (modified)
	* issm/trunk-jpl/src/c/objects/Node.cpp (modified)
	* issm/trunk-jpl/src/c/objects/Node.h (modified)
	* issm/trunk-jpl/src/c/objects/Numerics/Matrix.cpp (modified)
	* issm/trunk-jpl/src/c/objects/Numerics/Matrix.h (modified)
	* issm/trunk-jpl/src/c/objects/Numerics/Vector.cpp (modified)
	* issm/trunk-jpl/src/c/objects/Numerics/Vector.h (modified)
	* issm/trunk-jpl/src/c/objects/Params/BoolParam.h (modified)
	* issm/trunk-jpl/src/c/objects/Params/DoubleMatArrayParam.h (modified)
	* issm/trunk-jpl/src/c/objects/Params/DoubleMatParam.h (modified)
	* issm/trunk-jpl/src/c/objects/Params/DoubleParam.h (modified)
	* issm/trunk-jpl/src/c/objects/Params/DoubleVecParam.h (modified)
	* issm/trunk-jpl/src/c/objects/Params/FileParam.h (modified)
	* issm/trunk-jpl/src/c/objects/Params/IntMatParam.h (modified)
	* issm/trunk-jpl/src/c/objects/Params/IntParam.h (modified)
	* issm/trunk-jpl/src/c/objects/Params/IntVecParam.h (modified)
	* issm/trunk-jpl/src/c/objects/Params/MatrixParam.cpp (added)
	* issm/trunk-jpl/src/c/objects/Params/MatrixParam.h (added)
	* issm/trunk-jpl/src/c/objects/Params/Param.h (modified)
	* issm/trunk-jpl/src/c/objects/Params/PetscMatParam.cpp (deleted)
	* issm/trunk-jpl/src/c/objects/Params/PetscMatParam.h (deleted)
	* issm/trunk-jpl/src/c/objects/Params/PetscVecParam.cpp (deleted)
	* issm/trunk-jpl/src/c/objects/Params/PetscVecParam.h (deleted)
	* issm/trunk-jpl/src/c/objects/Params/StringArrayParam.h (modified)
	* issm/trunk-jpl/src/c/objects/Params/StringParam.h (modified)
	* issm/trunk-jpl/src/c/objects/Params/VectorParam.cpp (added)
	* issm/trunk-jpl/src/c/objects/Params/VectorParam.h (added)
	* issm/trunk-jpl/src/c/objects/Vertex.cpp (modified)
	* issm/trunk-jpl/src/c/objects/Vertex.h (modified)
	* issm/trunk-jpl/src/c/objects/objects.h (modified)
	* issm/trunk-jpl/src/c/shared/Exp/IsInPoly.cpp (modified)
	* issm/trunk-jpl/src/c/shared/Exp/exp.h (modified)
	* issm/trunk-jpl/src/c/shared/Matlab/ModuleBoot.cpp (modified)
	* issm/trunk-jpl/src/c/shared/Numerics/OptionsFromAnalysis.cpp (added)
	* issm/trunk-jpl/src/c/shared/Numerics/PetscOptionsFromAnalysis.cpp (modified)
	* issm/trunk-jpl/src/c/shared/Numerics/numerics.h (modified)
	* issm/trunk-jpl/src/c/solutions/convergence.cpp (modified)
	* issm/trunk-jpl/src/c/solutions/gradient_core.cpp (modified)
	* issm/trunk-jpl/src/c/solutions/issm.cpp (modified)
	* issm/trunk-jpl/src/c/toolkits/double (added)
	* issm/trunk-jpl/src/c/toolkits/double/MatlabMatrixToDoubleMatrix.cpp (added)
	* issm/trunk-jpl/src/c/toolkits/double/MatlabVectorToDoubleVector.cpp (added)
	* issm/trunk-jpl/src/c/toolkits/double/double.h (added)
	* issm/trunk-jpl/src/c/toolkits/mpi/patches/DetermineLocalSize.cpp (added)
	* issm/trunk-jpl/src/c/toolkits/mpi/patches/MPI_Boundariesfromrange.cpp (modified)
	* issm/trunk-jpl/src/c/toolkits/mpi/patches/MPI_Lowerrow.cpp (modified)
	* issm/trunk-jpl/src/c/toolkits/mpi/patches/MPI_Upperrow.cpp (modified)
	* issm/trunk-jpl/src/c/toolkits/mpi/patches/mpipatches.h (modified)
	* issm/trunk-jpl/src/c/toolkits/petsc/patches/ISSMToPetscInsertMode.cpp (added)
	* issm/trunk-jpl/src/c/toolkits/petsc/patches/ISSMToPetscNormMode.cpp (added)
	* issm/trunk-jpl/src/c/toolkits/petsc/patches/MatPartition.cpp (modified)
	* issm/trunk-jpl/src/c/toolkits/petsc/patches/MatToSerial.cpp (modified)
	* issm/trunk-jpl/src/c/toolkits/petsc/patches/MatlabMatrixToDoubleMatrix.cpp (deleted)
	* issm/trunk-jpl/src/c/toolkits/petsc/patches/MatlabVectorToDoubleVector.cpp (deleted)
	* issm/trunk-jpl/src/c/toolkits/petsc/patches/NewMat.cpp (modified)
	* issm/trunk-jpl/src/c/toolkits/petsc/patches/NewVec.cpp (modified)
	* issm/trunk-jpl/src/c/toolkits/petsc/patches/PetscDetermineLocalSize.cpp (deleted)
	* issm/trunk-jpl/src/c/toolkits/petsc/patches/VecToMPISerial.cpp (modified)
	* issm/trunk-jpl/src/c/toolkits/petsc/patches/petscpatches.h (modified)
	* issm/trunk-jpl/src/c/toolkits/petsc/petscincludes.h (modified)
	* issm/trunk-jpl/src/c/toolkits/plapack/plapackincludes.h (modified)
	* issm/trunk-jpl/src/c/toolkits/toolkits.h (modified)
	* issm/trunk-jpl/src/c/toolkits/toolkitsenums.h (added)
	* issm/trunk-jpl/src/m/enum/MatrixParamEnum.m (added)
	* issm/trunk-jpl/src/m/enum/PetscMatParamEnum.m (deleted)
	* issm/trunk-jpl/src/m/enum/PetscVecParamEnum.m (deleted)
	* issm/trunk-jpl/src/m/enum/VectorParamEnum.m (added)
	* issm/trunk-jpl/src/mex/ComputeBasalStress/ComputeBasalStress.cpp (modified)
	* issm/trunk-jpl/src/mex/ContourToMesh/ContourToMesh.cpp (modified)
	* issm/trunk-jpl/src/mex/ContourToNodes/ContourToNodes.cpp (modified)
	* issm/trunk-jpl/src/mex/ControlInputGetGradient/ControlInputGetGradient.cpp (modified)
	* issm/trunk-jpl/src/mex/GetVectorFromInputs/GetVectorFromInputs.cpp (modified)
	* issm/trunk-jpl/src/mex/Gradj/Gradj.cpp (modified)
	* issm/trunk-jpl/src/mex/InterpFromGridToMesh/InterpFromGridToMesh.cpp (modified)
	* issm/trunk-jpl/src/mex/InterpFromMesh2d/InterpFromMesh2d.cpp (modified)
	* issm/trunk-jpl/src/mex/InterpFromMeshToMesh3d/InterpFromMeshToMesh3d.cpp (modified)
	* issm/trunk-jpl/src/mex/Makefile.am (modified)
	* issm/trunk-jpl/src/mex/Orth/Orth.cpp (modified)
	* issm/trunk-jpl/src/mex/PointCloudFindNeighbors/PointCloudFindNeighbors.cpp (modified)
	* issm/trunk-jpl/src/mex/ResetCoordinateSystem/ResetCoordinateSystem.cpp (modified)
	* issm/trunk-jpl/src/mex/Solver/Solver.cpp (modified)

	Completed separation of Petsc from ISSM. Matrix and Vector
	are now ...