#
# ChangeLog for /
#
# Generated by Trac 1.4.3
# 05/20/25 08:35:14

Tue, 20 Mar 2012 19:18:39 GMT Eric.Larour [11749]
	* issm/trunk-jpl/externalpackages/modelE (added)
	* issm/trunk-jpl/externalpackages/modelE/install.sh (added)
	* issm/trunk-jpl/externalpackages/modelE/modelE_AR5_branch.2012.03.13_10.12.21.tgz (added)

	modelE from GISS


Tue, 20 Mar 2012 19:18:00 GMT Eric.Larour [11748]
	* issm/trunk-jpl/externalpackages/gmake (added)
	* issm/trunk-jpl/externalpackages/gmake/install.sh (added)
	* issm/trunk-jpl/externalpackages/gmake/make-3.82.tar.gz (added)

	GNU make


Tue, 20 Mar 2012 19:17:26 GMT Eric.Larour [11747]
	* issm/trunk-jpl/externalpackages/gsl (added)
	* issm/trunk-jpl/externalpackages/gsl/README (added)
	* issm/trunk-jpl/externalpackages/gsl/gsl-1.15.tar.gz (added)
	* issm/trunk-jpl/externalpackages/gsl/install-macosx64.sh (added)

	gsl package


Tue, 20 Mar 2012 19:14:29 GMT Eric.Larour [11746]
	* issm/trunk-jpl/execution (modified)

	Ignore test decks*


Tue, 20 Mar 2012 18:29:28 GMT Mathieu Morlighem [11745]
	* issm/trunk-jpl/src/c/objects/Numerics/Vector.cpp (modified)

	fixed issue with GetSize


Tue, 20 Mar 2012 16:51:35 GMT Mathieu Morlighem [11744]
	* issm/trunk-jpl/src/c/solutions/convergence.cpp (modified)

	no NULL pointer allowed for Vector or Matrix


Tue, 20 Mar 2012 16:51:05 GMT Mathieu Morlighem [11743]
	* issm/trunk-jpl/src/c/objects/Numerics/Matrix.cpp (modified)
	* issm/trunk-jpl/src/c/objects/Numerics/Matrix.h (modified)
	* issm/trunk-jpl/src/c/objects/Numerics/Vector.cpp (modified)
	* issm/trunk-jpl/src/c/objects/Numerics/Vector.h (modified)
	* issm/trunk-jpl/src/c/toolkits/petsc/patches/MatlabMatrixToPetscMatrix.cpp (modified)
	* issm/trunk-jpl/src/c/toolkits/petsc/patches/MatlabVectorToPetscVector.cpp (modified)

	no NULL pointer allowed for Vector or Matrix


Tue, 20 Mar 2012 16:04:46 GMT Mathieu Morlighem [11742]
	* issm/trunk-jpl/src/m/model/extrude.m (modified)

	minor


Tue, 20 Mar 2012 15:27:54 GMT Mathieu Morlighem [11741]
	* issm/trunk-jpl/externalpackages/chaco/chaco.patch (modified)

	reverted chaco installation back to normal (cannot compile on ...


Tue, 20 Mar 2012 14:19:06 GMT Mathieu Morlighem [11740]
	* issm/trunk-jpl/src/m/model/extrude.m (modified)

	Added lat/lon extrusion


Tue, 20 Mar 2012 03:58:58 GMT Eric.Larour [11739]
	* issm/trunk-jpl/src/c/objects/Numerics/Vector.cpp (modified)

	Some legitimate demands if the vector is a NULL pointer


Tue, 20 Mar 2012 03:54:30 GMT Eric.Larour [11738]
	* issm/trunk-jpl/externalpackages/matlab/install.sh (modified)

	reverting


Tue, 20 Mar 2012 03:53:40 GMT Eric.Larour [11737]
	* issm/trunk-jpl/externalpackages/adolc/install.sh (modified)
	* issm/trunk-jpl/externalpackages/chaco/chaco.patch (modified)
	* issm/trunk-jpl/externalpackages/matlab/install.sh (modified)
	* issm/trunk-jpl/externalpackages/mitgcm/install.sh (modified)
	* issm/trunk-jpl/externalpackages/petsc/install-2.3.2-macosx64.sh (added)
	* issm/trunk-jpl/src/c/modules/Solverx/Solverx.cpp (modified)
	* issm/trunk-jpl/src/c/objects/Numerics/Vector.cpp (modified)

	Vector object does not have an M size.


Tue, 20 Mar 2012 03:14:03 GMT Eric.Larour [11736]
	* issm/trunk-jpl/m4/issm_options.m4 (modified)

	Added gsl support + relaxed constraints on presence of PETSC to ...


Tue, 20 Mar 2012 03:12:04 GMT Eric.Larour [11735]
	* issm/trunk-jpl/src/c/Makefile.am (modified)

	Adding gsl support, issm toolkit.


Tue, 20 Mar 2012 03:11:39 GMT Eric.Larour [11734]
	* issm/trunk-jpl/src/c/objects/Numerics/ElementMatrix.cpp (modified)
	* issm/trunk-jpl/src/c/objects/Numerics/ElementVector.cpp (modified)
	* issm/trunk-jpl/src/c/objects/Numerics/Matrix.cpp (modified)
	* issm/trunk-jpl/src/c/objects/Numerics/Matrix.h (modified)
	* issm/trunk-jpl/src/c/objects/Numerics/Vector.cpp (modified)
	* issm/trunk-jpl/src/c/objects/Numerics/Vector.h (modified)

	Hook up new issm toolkit


Tue, 20 Mar 2012 03:11:11 GMT Eric.Larour [11733]
	* issm/trunk-jpl/src/c/toolkits/double/MatlabVectorToDoubleVector.cpp (modified)
	* issm/trunk-jpl/src/c/toolkits/issm (added)
	* issm/trunk-jpl/src/c/toolkits/issm/SeqMat.cpp (added)
	* issm/trunk-jpl/src/c/toolkits/issm/SeqMat.h (added)
	* issm/trunk-jpl/src/c/toolkits/issm/SeqVec.cpp (added)
	* issm/trunk-jpl/src/c/toolkits/issm/SeqVec.h (added)
	* issm/trunk-jpl/src/c/toolkits/issm/issmtoolkit.h (added)
	* issm/trunk-jpl/src/c/toolkits/toolkits.h (modified)

	Adding issm toolkit


Tue, 20 Mar 2012 03:10:30 GMT Eric.Larour [11732]
	* issm/trunk-jpl/configs/config-macosx64-larour-nopetsc.sh (added)

	No dakota, no petsc, to test gsl API


Tue, 20 Mar 2012 03:09:57 GMT Eric.Larour [11731]
	* issm/trunk-jpl/configs/config-macosx64-larour.sh (modified)

	No dakota for now


Tue, 20 Mar 2012 03:09:17 GMT Eric.Larour [11730]
	* issm/trunk-jpl/src/c/shared/Alloc/alloc.cpp (modified)

	Avoid potential API issue when Petsc is absent


Tue, 20 Mar 2012 03:08:16 GMT Eric.Larour [11729]
	* issm/trunk-jpl/src/m/model/solveparallel.m (modified)

	Detect presence of petsc for solving in parallel. Otherwise, run with ...


Tue, 20 Mar 2012 03:07:55 GMT Eric.Larour [11728]
	* issm/trunk-jpl/src/m/model/petscversion.m (modified)

	Added a default petsc version


Tue, 20 Mar 2012 03:07:35 GMT Eric.Larour [11727]
	* issm/trunk-jpl/src/m/utils/OS/ispetsc.m (added)

	Detect petsc compilation in config.h


Tue, 20 Mar 2012 03:07:14 GMT Eric.Larour [11726]
	* issm/trunk-jpl/src/c/modules/Solverx/Solverx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/Solverx/Solverx.h (modified)
	* issm/trunk-jpl/src/c/modules/Solverx/SolverxGsl.cpp (added)

	Added GSL solver


Tue, 20 Mar 2012 03:06:31 GMT Eric.Larour [11725]
	* issm/trunk-jpl/src/c/solutions/convergence.cpp (modified)

	Shield some potentially dangerous API dependency


Tue, 20 Mar 2012 01:16:35 GMT Eric.Larour [11724]
	* issm/trunk-jpl/src/c/solutions/issm.cpp (modified)

	Broader definition of when issm should run in parallel.


Sun, 18 Mar 2012 17:05:33 GMT Eric.Larour [11723]
	* issm/trunk-jpl/src/mex/Makefile.am (modified)

	Add GSL support


Sun, 18 Mar 2012 17:04:29 GMT Eric.Larour [11722]
	* issm/trunk-jpl/etc/environment.sh (modified)
	* issm/trunk-jpl/etc/environment_variables.sh (modified)

	Add GSL support


Sun, 18 Mar 2012 17:01:46 GMT Eric.Larour [11721]
	* issm/trunk-jpl/src/c/shared/Matlab/ModuleBoot.cpp (modified)
	* issm/trunk-jpl/src/c/shared/Matlab/ModuleEnd.cpp (modified)

	Live without Petsc


Fri, 16 Mar 2012 15:36:17 GMT Mathieu Morlighem [11720]
	* issm/trunk-jpl/src/c/objects/Elements/Tria.cpp (modified)
	* issm/trunk-jpl/src/c/objects/objects.h (modified)

	Better error message if input does not have the right length


Thu, 15 Mar 2012 22:17:36 GMT Mathieu Morlighem [11719]
	* issm/trunk-jpl/src/c/modules/ModelProcessorx/Prognostic/UpdateElementsPrognostic.cpp (modified)

	Precipitation not needed for prognostic


Thu, 15 Mar 2012 20:47:10 GMT glperez [11718]
	* issm/trunk-jpl/externalpackages/android-sdk/install.sh (modified)

	Modified the install.sh script of Android-SDK


Thu, 15 Mar 2012 19:07:19 GMT Mathieu Morlighem [11717]
	* issm/trunk-jpl/src/m/utils/Exp/expconcatenate.m (deleted)
	* issm/trunk-jpl/src/m/utils/Exp/expcut.m (deleted)
	* issm/trunk-jpl/src/m/utils/Exp/expselect.m (deleted)

	removing some useless functions


Thu, 15 Mar 2012 00:09:20 GMT Mathieu Morlighem [11716]
	* issm/trunk-jpl/src/c/io/Matlab/FetchMatlabData.cpp (modified)
	* issm/trunk-jpl/src/c/io/Matlab/WriteMatlabData.cpp (modified)
	* issm/trunk-jpl/src/c/modules/Solverx/Solverx.cpp (modified)
	* issm/trunk-jpl/src/c/toolkits/petsc/patches/PetscVectorToMatlabVector.cpp (modified)

	Added support for empty vectors in serial mode


Wed, 14 Mar 2012 22:39:14 GMT Mathieu Morlighem [11715]
	* issm/trunk-jpl/src/c/modules/Solverx/Solverx.cpp (modified)

	fixed problem if uf=NULL


Wed, 14 Mar 2012 22:37:50 GMT Mathieu Morlighem [11714]
	* issm/trunk-jpl/src/c/solutions/convergence.cpp (modified)

	check uf size


Wed, 14 Mar 2012 22:37:29 GMT Mathieu Morlighem [11713]
	* issm/trunk-jpl/src/c/objects/Numerics/Matrix.cpp (modified)
	* issm/trunk-jpl/src/c/objects/Numerics/Vector.cpp (modified)

	Added lots of asserts to avoid nasty segmentation faults


Wed, 14 Mar 2012 22:19:59 GMT Mathieu Morlighem [11712]
	* issm/trunk-jpl/src/c/modules/Solverx/Solverx.cpp (modified)

	Added assert to avoid crash


Wed, 14 Mar 2012 22:05:32 GMT Eric.Larour [11711]
	* issm/trunk-jpl/externalpackages/mitgcm/install.sh (modified)
	* issm/trunk-jpl/externalpackages/mitgcm/notes (added)

	Dimitris notes and updates on MITgcm.


Wed, 14 Mar 2012 21:58:01 GMT Eric.Larour [11710]
	* issm/trunk/externalpackages/mitgcm/notes (added)

	Notes from Dimitris on MITgcm


Wed, 14 Mar 2012 21:56:19 GMT Mathieu Morlighem [11709]
	* issm/trunk-jpl/externalpackages/vim/addons/vim/syntax/c.vim (modified)

	Updated syntax highlighting


Wed, 14 Mar 2012 21:15:28 GMT cborstad [11708]
	* issm/branches/trunk-jpl-damage (modified)
	* issm/branches/trunk-jpl-damage/configs/config-macosx64-larour-ad.sh (modified)
	* issm/branches/trunk-jpl-damage/configs/config-macosx64-larour.sh (modified)
	* issm/branches/trunk-jpl-damage/cron/configs/macosx64_larour_validation (modified)
	* issm/branches/trunk-jpl-damage/m4/issm_options.m4 (modified)
	* issm/branches/trunk-jpl-damage/src/c/Container/Elements.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/Container/Parameters.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/Container/Parameters.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/EnumDefinitions/EnumDefinitions.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/Makefile.am (modified)
	* issm/branches/trunk-jpl-damage/src/c/io/Matlab/FetchMatlabData.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/io/Matlab/WriteMatlabData.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/io/Matlab/matlabio.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/AverageOntoPartitionx/AverageOntoPartitionx.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/ComputeBasalStressx/ComputeBasalStressx.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/ComputeBasalStressx/ComputeBasalStressx.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/ComputeStrainRatex/ComputeStrainRatex.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/ComputeStrainRatex/ComputeStrainRatex.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/ContourToMeshx/ContourToMeshx.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/ContourToMeshx/ContourToMeshx.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/ContourToMeshx/ContourToMeshxt.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/ContourToNodesx/ContourToNodesx.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/ContourToNodesx/ContourToNodesx.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/ControlInputGetGradientx/ControlInputGetGradientx.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/ControlInputGetGradientx/ControlInputGetGradientx.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/ControlInputSetGradientx/ControlInputSetGradientx.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/ControlInputSetGradientx/ControlInputSetGradientx.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/EnumToStringx/EnumToStringx.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/GetVectorFromControlInputsx/GetVectorFromControlInputsx.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/GetVectorFromControlInputsx/GetVectorFromControlInputsx.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/GetVectorFromInputsx/GetVectorFromInputsx.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/GetVectorFromInputsx/GetVectorFromInputsx.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/Gradjx/Gradjx.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/Gradjx/Gradjx.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/GroundinglineMigrationx/GroundinglineMigrationx.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/GroundinglineMigrationx/GroundinglineMigrationx.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/InputUpdateFromVectorDakotax/InputUpdateFromVectorDakotax.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/InputUpdateFromVectorDakotax/InputUpdateFromVectorDakotax.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/InputUpdateFromVectorx/InputUpdateFromVectorx.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/InputUpdateFromVectorx/InputUpdateFromVectorx.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/InterpFromGridToMeshx/InterpFromGridToMeshx.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/InterpFromGridToMeshx/InterpFromGridToMeshx.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/InterpFromMesh2dx/InterpFromMesh2dx.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/InterpFromMesh2dx/InterpFromMesh2dx.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/InterpFromMesh2dx/InterpFromMesh2dxt.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/InterpFromMeshToMesh2dx/InterpFromMeshToMesh2dx.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/InterpFromMeshToMesh3dx/InterpFromMeshToMesh3dx.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/InterpFromMeshToMesh3dx/InterpFromMeshToMesh3dx.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/Orthx/Orthx.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/Orthx/Orthx.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/PointCloudFindNeighborsx/PointCloudFindNeighborsx.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/PointCloudFindNeighborsx/PointCloudFindNeighborsx.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/PointCloudFindNeighborsx/PointCloudFindNeighborsxt.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/Reduceloadx/Reduceloadx.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/SetControlInputsFromVectorx/SetControlInputsFromVectorx.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/SetControlInputsFromVectorx/SetControlInputsFromVectorx.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/Solverx/Solverx.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/Solverx/Solverx.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/StringToEnumx/StringToEnumx.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/SystemMatricesx/SystemMatricesx.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/UpdateVertexPositionsx/UpdateVertexPositionsx.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/ElementResults/BoolElementResult.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/ElementResults/BoolElementResult.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/ElementResults/DoubleElementResult.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/ElementResults/ElementResult.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/ElementResults/PentaP1ElementResult.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/ElementResults/PentaP1ElementResult.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/ElementResults/TriaP1ElementResult.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/ElementResults/TriaP1ElementResult.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Elements/Element.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Elements/Penta.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Elements/Penta.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Elements/Tria.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Elements/Tria.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/ExternalResults/PetscVecExternalResult.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/ExternalResults/PetscVecExternalResult.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/FemModel.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Inputs/BoolInput.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Inputs/BoolInput.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Inputs/ControlInput.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Inputs/ControlInput.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Inputs/DatasetInput.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Inputs/DoubleInput.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Inputs/DoubleInput.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Inputs/Input.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Inputs/IntInput.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Inputs/IntInput.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Inputs/PentaP1Input.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Inputs/PentaP1Input.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Inputs/TransientInput.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Inputs/TransientInput.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Inputs/TriaP1Input.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Inputs/TriaP1Input.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Materials/Material.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Materials/Matice.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Materials/Matice.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Materials/Matpar.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Node.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Node.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Numerics/Matrix.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Numerics/Matrix.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Numerics/Vector.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Numerics/Vector.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Params/BoolParam.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Params/DoubleMatArrayParam.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Params/DoubleMatParam.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Params/DoubleParam.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Params/DoubleVecParam.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Params/FileParam.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Params/IntMatParam.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Params/IntParam.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Params/IntVecParam.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Params/MatrixParam.cpp (copied)
	* issm/branches/trunk-jpl-damage/src/c/objects/Params/MatrixParam.h (copied)
	* issm/branches/trunk-jpl-damage/src/c/objects/Params/Param.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Params/PetscMatParam.cpp (deleted)
	* issm/branches/trunk-jpl-damage/src/c/objects/Params/PetscMatParam.h (deleted)
	* issm/branches/trunk-jpl-damage/src/c/objects/Params/PetscVecParam.cpp (deleted)
	* issm/branches/trunk-jpl-damage/src/c/objects/Params/PetscVecParam.h (deleted)
	* issm/branches/trunk-jpl-damage/src/c/objects/Params/StringArrayParam.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Params/StringParam.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Params/VectorParam.cpp (copied)
	* issm/branches/trunk-jpl-damage/src/c/objects/Params/VectorParam.h (copied)
	* issm/branches/trunk-jpl-damage/src/c/objects/Vertex.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Vertex.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/objects.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/shared/Alloc/alloc.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/shared/Exp/IsInPoly.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/shared/Exp/exp.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/shared/Matlab/ModuleBoot.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/shared/Numerics/OptionsFromAnalysis.cpp (copied)
	* issm/branches/trunk-jpl-damage/src/c/shared/Numerics/PetscOptionsFromAnalysis.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/shared/Numerics/numerics.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/solutions/controltao_core.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/solutions/convergence.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/solutions/gradient_core.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/solutions/issm.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/toolkits/double (copied)
	* issm/branches/trunk-jpl-damage/src/c/toolkits/mpi/patches/DetermineLocalSize.cpp (copied)
	* issm/branches/trunk-jpl-damage/src/c/toolkits/mpi/patches/MPI_Boundariesfromrange.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/toolkits/mpi/patches/MPI_Lowerrow.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/toolkits/mpi/patches/MPI_Upperrow.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/toolkits/mpi/patches/mpipatches.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/toolkits/petsc/patches/ISSMToPetscInsertMode.cpp (copied)
	* issm/branches/trunk-jpl-damage/src/c/toolkits/petsc/patches/ISSMToPetscNormMode.cpp (copied)
	* issm/branches/trunk-jpl-damage/src/c/toolkits/petsc/patches/MatPartition.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/toolkits/petsc/patches/MatToSerial.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/toolkits/petsc/patches/MatlabMatrixToDoubleMatrix.cpp (deleted)
	* issm/branches/trunk-jpl-damage/src/c/toolkits/petsc/patches/MatlabVectorToDoubleVector.cpp (deleted)
	* issm/branches/trunk-jpl-damage/src/c/toolkits/petsc/patches/NewMat.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/toolkits/petsc/patches/NewVec.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/toolkits/petsc/patches/PetscDetermineLocalSize.cpp (deleted)
	* issm/branches/trunk-jpl-damage/src/c/toolkits/petsc/patches/VecToMPISerial.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/toolkits/petsc/patches/petscpatches.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/toolkits/petsc/petscincludes.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/toolkits/plapack/plapackincludes.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/toolkits/toolkits.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/toolkits/toolkitsenums.h (copied)
	* issm/branches/trunk-jpl-damage/src/m/classes/inversion.m (modified)
	* issm/branches/trunk-jpl-damage/src/m/enum/MatrixParamEnum.m (copied)
	* issm/branches/trunk-jpl-damage/src/m/enum/PetscMatParamEnum.m (deleted)
	* issm/branches/trunk-jpl-damage/src/m/enum/PetscVecParamEnum.m (deleted)
	* issm/branches/trunk-jpl-damage/src/m/enum/VectorParamEnum.m (copied)
	* issm/branches/trunk-jpl-damage/src/mex/ComputeBasalStress/ComputeBasalStress.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/mex/ContourToMesh/ContourToMesh.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/mex/ContourToNodes/ContourToNodes.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/mex/ControlInputGetGradient/ControlInputGetGradient.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/mex/CreateNodalConstraints/CreateNodalConstraints.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/mex/GetVectorFromInputs/GetVectorFromInputs.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/mex/Gradj/Gradj.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/mex/InputUpdateFromSolution/InputUpdateFromSolution.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/mex/InterpFromGridToMesh/InterpFromGridToMesh.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/mex/InterpFromMesh2d/InterpFromMesh2d.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/mex/InterpFromMeshToMesh3d/InterpFromMeshToMesh3d.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/mex/Makefile.am (modified)
	* issm/branches/trunk-jpl-damage/src/mex/Mergesolutionfromftog/Mergesolutionfromftog.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/mex/Orth/Orth.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/mex/PointCloudFindNeighbors/PointCloudFindNeighbors.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/mex/Reduceload/Reduceload.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/mex/Reducevectorgtof/Reducevectorgtof.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/mex/Reducevectorgtos/Reducevectorgtos.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/mex/ResetCoordinateSystem/ResetCoordinateSystem.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/mex/Solver/Solver.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/mex/SystemMatrices/SystemMatrices.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/mex/UpdateDynamicConstraints/UpdateDynamicConstraints.cpp (modified)

	merged trunk-jpl through revision 11707 into branches/trunk-jpl-
	damage


Wed, 14 Mar 2012 16:28:47 GMT Mathieu Morlighem [11707]
	* issm/trunk-jpl/src/c/modules/UpdateVertexPositionsx/UpdateVertexPositionsx.cpp (modified)

	moved delete to xdelete for PETSC vec


Wed, 14 Mar 2012 16:26:08 GMT Mathieu Morlighem [11706]
	* issm/trunk-jpl/src/c/solutions/controltao_core.cpp (modified)

	fixed memory leak


Wed, 14 Mar 2012 16:21:15 GMT Eric.Larour [11705]
	* issm/trunk-jpl/src/c/shared/Alloc/alloc.cpp (modified)

	Wrong symbol


Wed, 14 Mar 2012 16:09:05 GMT Mathieu Morlighem [11704]
	* issm/trunk-jpl/src/c/objects/Numerics/Vector.cpp (modified)
	* issm/trunk-jpl/src/c/objects/Numerics/Vector.h (modified)

	Added constructor from PETSc vector


Wed, 14 Mar 2012 16:08:48 GMT Mathieu Morlighem [11703]
	* issm/trunk-jpl/src/c/solutions/controltao_core.cpp (modified)

	updated controltao with new Vector/Matrix interface


Wed, 14 Mar 2012 16:06:41 GMT Mathieu Morlighem [11702]
	* issm/trunk-jpl/src/c/shared/Numerics/OptionsFromAnalysis.cpp (modified)

	wrong string size


Wed, 14 Mar 2012 16:06:26 GMT Mathieu Morlighem [11701]
	* issm/trunk-jpl/src/c/modules/Solverx/Solverx.cpp (modified)

	Fixed seg fault


Wed, 14 Mar 2012 15:55:03 GMT Mathieu Morlighem [11700]
	* issm/trunk-jpl/src/mex/Reducevectorgtof/Reducevectorgtof.cpp (modified)

	cosmetics


Wed, 14 Mar 2012 15:17:48 GMT Mathieu Morlighem [11699]
	* issm/trunk-jpl/src/c/modules/Reduceloadx/Reduceloadx.cpp (modified)

	minor


Wed, 14 Mar 2012 03:01:58 GMT Eric.Larour [11698]
	* issm/trunk-jpl/cron/configs/macosx64_larour_validation (modified)

	Skip bamg


Wed, 14 Mar 2012 03:01:27 GMT Eric.Larour [11697]
	* issm/trunk-jpl/configs/config-macosx64-larour-ad.sh (modified)
	* issm/trunk-jpl/configs/config-macosx64-larour.sh (modified)

	run without petsc


Wed, 14 Mar 2012 03:00:50 GMT Eric.Larour [11696]
	* issm/trunk-jpl/m4/issm_options.m4 (modified)

	More leeway in terms of running without petsc support


Wed, 14 Mar 2012 02:59:59 GMT Eric.Larour [11695]
	* issm/trunk-jpl/src/c/Container/Elements.cpp (modified)
	* issm/trunk-jpl/src/c/Container/Parameters.cpp (modified)
	* issm/trunk-jpl/src/c/Container/Parameters.h (modified)
	* issm/trunk-jpl/src/c/EnumDefinitions/EnumDefinitions.h (modified)
	* issm/trunk-jpl/src/c/Makefile.am (modified)
	* issm/trunk-jpl/src/c/io/Matlab/FetchMatlabData.cpp (modified)
	* issm/trunk-jpl/src/c/io/Matlab/WriteMatlabData.cpp (modified)
	* issm/trunk-jpl/src/c/io/Matlab/matlabio.h (modified)
	* issm/trunk-jpl/src/c/modules/AverageOntoPartitionx/AverageOntoPartitionx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/ComputeBasalStressx/ComputeBasalStressx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/ComputeBasalStressx/ComputeBasalStressx.h (modified)
	* issm/trunk-jpl/src/c/modules/ComputeStrainRatex/ComputeStrainRatex.cpp (modified)
	* issm/trunk-jpl/src/c/modules/ComputeStrainRatex/ComputeStrainRatex.h (modified)
	* issm/trunk-jpl/src/c/modules/ContourToMeshx/ContourToMeshx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/ContourToMeshx/ContourToMeshx.h (modified)
	* issm/trunk-jpl/src/c/modules/ContourToMeshx/ContourToMeshxt.cpp (modified)
	* issm/trunk-jpl/src/c/modules/ContourToNodesx/ContourToNodesx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/ContourToNodesx/ContourToNodesx.h (modified)
	* issm/trunk-jpl/src/c/modules/ControlInputGetGradientx/ControlInputGetGradientx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/ControlInputGetGradientx/ControlInputGetGradientx.h (modified)
	* issm/trunk-jpl/src/c/modules/ControlInputSetGradientx/ControlInputSetGradientx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/ControlInputSetGradientx/ControlInputSetGradientx.h (modified)
	* issm/trunk-jpl/src/c/modules/EnumToStringx/EnumToStringx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/GetVectorFromControlInputsx/GetVectorFromControlInputsx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/GetVectorFromControlInputsx/GetVectorFromControlInputsx.h (modified)
	* issm/trunk-jpl/src/c/modules/GetVectorFromInputsx/GetVectorFromInputsx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/GetVectorFromInputsx/GetVectorFromInputsx.h (modified)
	* issm/trunk-jpl/src/c/modules/Gradjx/Gradjx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/Gradjx/Gradjx.h (modified)
	* issm/trunk-jpl/src/c/modules/GroundinglineMigrationx/GroundinglineMigrationx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/GroundinglineMigrationx/GroundinglineMigrationx.h (modified)
	* issm/trunk-jpl/src/c/modules/InputUpdateFromVectorDakotax/InputUpdateFromVectorDakotax.cpp (modified)
	* issm/trunk-jpl/src/c/modules/InputUpdateFromVectorDakotax/InputUpdateFromVectorDakotax.h (modified)
	* issm/trunk-jpl/src/c/modules/InputUpdateFromVectorx/InputUpdateFromVectorx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/InputUpdateFromVectorx/InputUpdateFromVectorx.h (modified)
	* issm/trunk-jpl/src/c/modules/InterpFromGridToMeshx/InterpFromGridToMeshx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/InterpFromGridToMeshx/InterpFromGridToMeshx.h (modified)
	* issm/trunk-jpl/src/c/modules/InterpFromMesh2dx/InterpFromMesh2dx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/InterpFromMesh2dx/InterpFromMesh2dx.h (modified)
	* issm/trunk-jpl/src/c/modules/InterpFromMesh2dx/InterpFromMesh2dxt.cpp (modified)
	* issm/trunk-jpl/src/c/modules/InterpFromMeshToMesh2dx/InterpFromMeshToMesh2dx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/InterpFromMeshToMesh3dx/InterpFromMeshToMesh3dx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/InterpFromMeshToMesh3dx/InterpFromMeshToMesh3dx.h (modified)
	* issm/trunk-jpl/src/c/modules/Orthx/Orthx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/Orthx/Orthx.h (modified)
	* issm/trunk-jpl/src/c/modules/PointCloudFindNeighborsx/PointCloudFindNeighborsx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/PointCloudFindNeighborsx/PointCloudFindNeighborsx.h (modified)
	* issm/trunk-jpl/src/c/modules/PointCloudFindNeighborsx/PointCloudFindNeighborsxt.cpp (modified)
	* issm/trunk-jpl/src/c/modules/SetControlInputsFromVectorx/SetControlInputsFromVectorx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/SetControlInputsFromVectorx/SetControlInputsFromVectorx.h (modified)
	* issm/trunk-jpl/src/c/modules/Solverx/Solverx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/Solverx/Solverx.h (modified)
	* issm/trunk-jpl/src/c/modules/StringToEnumx/StringToEnumx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/SystemMatricesx/SystemMatricesx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/UpdateVertexPositionsx/UpdateVertexPositionsx.cpp (modified)
	* issm/trunk-jpl/src/c/objects/ElementResults/BoolElementResult.cpp (modified)
	* issm/trunk-jpl/src/c/objects/ElementResults/BoolElementResult.h (modified)
	* issm/trunk-jpl/src/c/objects/ElementResults/DoubleElementResult.h (modified)
	* issm/trunk-jpl/src/c/objects/ElementResults/ElementResult.h (modified)
	* issm/trunk-jpl/src/c/objects/ElementResults/PentaP1ElementResult.cpp (modified)
	* issm/trunk-jpl/src/c/objects/ElementResults/PentaP1ElementResult.h (modified)
	* issm/trunk-jpl/src/c/objects/ElementResults/TriaP1ElementResult.cpp (modified)
	* issm/trunk-jpl/src/c/objects/ElementResults/TriaP1ElementResult.h (modified)
	* issm/trunk-jpl/src/c/objects/Elements/Element.h (modified)
	* issm/trunk-jpl/src/c/objects/Elements/Penta.cpp (modified)
	* issm/trunk-jpl/src/c/objects/Elements/Penta.h (modified)
	* issm/trunk-jpl/src/c/objects/Elements/Tria.cpp (modified)
	* issm/trunk-jpl/src/c/objects/Elements/Tria.h (modified)
	* issm/trunk-jpl/src/c/objects/ExternalResults/PetscVecExternalResult.cpp (modified)
	* issm/trunk-jpl/src/c/objects/ExternalResults/PetscVecExternalResult.h (modified)
	* issm/trunk-jpl/src/c/objects/FemModel.cpp (modified)
	* issm/trunk-jpl/src/c/objects/Inputs/BoolInput.cpp (modified)
	* issm/trunk-jpl/src/c/objects/Inputs/BoolInput.h (modified)
	* issm/trunk-jpl/src/c/objects/Inputs/ControlInput.cpp (modified)
	* issm/trunk-jpl/src/c/objects/Inputs/ControlInput.h (modified)
	* issm/trunk-jpl/src/c/objects/Inputs/DatasetInput.h (modified)
	* issm/trunk-jpl/src/c/objects/Inputs/DoubleInput.cpp (modified)
	* issm/trunk-jpl/src/c/objects/Inputs/DoubleInput.h (modified)
	* issm/trunk-jpl/src/c/objects/Inputs/Input.h (modified)
	* issm/trunk-jpl/src/c/objects/Inputs/IntInput.cpp (modified)
	* issm/trunk-jpl/src/c/objects/Inputs/IntInput.h (modified)
	* issm/trunk-jpl/src/c/objects/Inputs/PentaP1Input.cpp (modified)
	* issm/trunk-jpl/src/c/objects/Inputs/PentaP1Input.h (modified)
	* issm/trunk-jpl/src/c/objects/Inputs/TransientInput.cpp (modified)
	* issm/trunk-jpl/src/c/objects/Inputs/TransientInput.h (modified)
	* issm/trunk-jpl/src/c/objects/Inputs/TriaP1Input.cpp (modified)
	* issm/trunk-jpl/src/c/objects/Inputs/TriaP1Input.h (modified)
	* issm/trunk-jpl/src/c/objects/Materials/Material.h (modified)
	* issm/trunk-jpl/src/c/objects/Materials/Matice.cpp (modified)
	* issm/trunk-jpl/src/c/objects/Materials/Matice.h (modified)
	* issm/trunk-jpl/src/c/objects/Materials/Matpar.h (modified)
	* issm/trunk-jpl/src/c/objects/Node.cpp (modified)
	* issm/trunk-jpl/src/c/objects/Node.h (modified)
	* issm/trunk-jpl/src/c/objects/Numerics/Matrix.cpp (modified)
	* issm/trunk-jpl/src/c/objects/Numerics/Matrix.h (modified)
	* issm/trunk-jpl/src/c/objects/Numerics/Vector.cpp (modified)
	* issm/trunk-jpl/src/c/objects/Numerics/Vector.h (modified)
	* issm/trunk-jpl/src/c/objects/Params/BoolParam.h (modified)
	* issm/trunk-jpl/src/c/objects/Params/DoubleMatArrayParam.h (modified)
	* issm/trunk-jpl/src/c/objects/Params/DoubleMatParam.h (modified)
	* issm/trunk-jpl/src/c/objects/Params/DoubleParam.h (modified)
	* issm/trunk-jpl/src/c/objects/Params/DoubleVecParam.h (modified)
	* issm/trunk-jpl/src/c/objects/Params/FileParam.h (modified)
	* issm/trunk-jpl/src/c/objects/Params/IntMatParam.h (modified)
	* issm/trunk-jpl/src/c/objects/Params/IntParam.h (modified)
	* issm/trunk-jpl/src/c/objects/Params/IntVecParam.h (modified)
	* issm/trunk-jpl/src/c/objects/Params/MatrixParam.cpp (added)
	* issm/trunk-jpl/src/c/objects/Params/MatrixParam.h (added)
	* issm/trunk-jpl/src/c/objects/Params/Param.h (modified)
	* issm/trunk-jpl/src/c/objects/Params/PetscMatParam.cpp (deleted)
	* issm/trunk-jpl/src/c/objects/Params/PetscMatParam.h (deleted)
	* issm/trunk-jpl/src/c/objects/Params/PetscVecParam.cpp (deleted)
	* issm/trunk-jpl/src/c/objects/Params/PetscVecParam.h (deleted)
	* issm/trunk-jpl/src/c/objects/Params/StringArrayParam.h (modified)
	* issm/trunk-jpl/src/c/objects/Params/StringParam.h (modified)
	* issm/trunk-jpl/src/c/objects/Params/VectorParam.cpp (added)
	* issm/trunk-jpl/src/c/objects/Params/VectorParam.h (added)
	* issm/trunk-jpl/src/c/objects/Vertex.cpp (modified)
	* issm/trunk-jpl/src/c/objects/Vertex.h (modified)
	* issm/trunk-jpl/src/c/objects/objects.h (modified)
	* issm/trunk-jpl/src/c/shared/Exp/IsInPoly.cpp (modified)
	* issm/trunk-jpl/src/c/shared/Exp/exp.h (modified)
	* issm/trunk-jpl/src/c/shared/Matlab/ModuleBoot.cpp (modified)
	* issm/trunk-jpl/src/c/shared/Numerics/OptionsFromAnalysis.cpp (added)
	* issm/trunk-jpl/src/c/shared/Numerics/PetscOptionsFromAnalysis.cpp (modified)
	* issm/trunk-jpl/src/c/shared/Numerics/numerics.h (modified)
	* issm/trunk-jpl/src/c/solutions/convergence.cpp (modified)
	* issm/trunk-jpl/src/c/solutions/gradient_core.cpp (modified)
	* issm/trunk-jpl/src/c/solutions/issm.cpp (modified)
	* issm/trunk-jpl/src/c/toolkits/double (added)
	* issm/trunk-jpl/src/c/toolkits/double/MatlabMatrixToDoubleMatrix.cpp (added)
	* issm/trunk-jpl/src/c/toolkits/double/MatlabVectorToDoubleVector.cpp (added)
	* issm/trunk-jpl/src/c/toolkits/double/double.h (added)
	* issm/trunk-jpl/src/c/toolkits/mpi/patches/DetermineLocalSize.cpp (added)
	* issm/trunk-jpl/src/c/toolkits/mpi/patches/MPI_Boundariesfromrange.cpp (modified)
	* issm/trunk-jpl/src/c/toolkits/mpi/patches/MPI_Lowerrow.cpp (modified)
	* issm/trunk-jpl/src/c/toolkits/mpi/patches/MPI_Upperrow.cpp (modified)
	* issm/trunk-jpl/src/c/toolkits/mpi/patches/mpipatches.h (modified)
	* issm/trunk-jpl/src/c/toolkits/petsc/patches/ISSMToPetscInsertMode.cpp (added)
	* issm/trunk-jpl/src/c/toolkits/petsc/patches/ISSMToPetscNormMode.cpp (added)
	* issm/trunk-jpl/src/c/toolkits/petsc/patches/MatPartition.cpp (modified)
	* issm/trunk-jpl/src/c/toolkits/petsc/patches/MatToSerial.cpp (modified)
	* issm/trunk-jpl/src/c/toolkits/petsc/patches/MatlabMatrixToDoubleMatrix.cpp (deleted)
	* issm/trunk-jpl/src/c/toolkits/petsc/patches/MatlabVectorToDoubleVector.cpp (deleted)
	* issm/trunk-jpl/src/c/toolkits/petsc/patches/NewMat.cpp (modified)
	* issm/trunk-jpl/src/c/toolkits/petsc/patches/NewVec.cpp (modified)
	* issm/trunk-jpl/src/c/toolkits/petsc/patches/PetscDetermineLocalSize.cpp (deleted)
	* issm/trunk-jpl/src/c/toolkits/petsc/patches/VecToMPISerial.cpp (modified)
	* issm/trunk-jpl/src/c/toolkits/petsc/patches/petscpatches.h (modified)
	* issm/trunk-jpl/src/c/toolkits/petsc/petscincludes.h (modified)
	* issm/trunk-jpl/src/c/toolkits/plapack/plapackincludes.h (modified)
	* issm/trunk-jpl/src/c/toolkits/toolkits.h (modified)
	* issm/trunk-jpl/src/c/toolkits/toolkitsenums.h (added)
	* issm/trunk-jpl/src/m/enum/MatrixParamEnum.m (added)
	* issm/trunk-jpl/src/m/enum/PetscMatParamEnum.m (deleted)
	* issm/trunk-jpl/src/m/enum/PetscVecParamEnum.m (deleted)
	* issm/trunk-jpl/src/m/enum/VectorParamEnum.m (added)
	* issm/trunk-jpl/src/mex/ComputeBasalStress/ComputeBasalStress.cpp (modified)
	* issm/trunk-jpl/src/mex/ContourToMesh/ContourToMesh.cpp (modified)
	* issm/trunk-jpl/src/mex/ContourToNodes/ContourToNodes.cpp (modified)
	* issm/trunk-jpl/src/mex/ControlInputGetGradient/ControlInputGetGradient.cpp (modified)
	* issm/trunk-jpl/src/mex/GetVectorFromInputs/GetVectorFromInputs.cpp (modified)
	* issm/trunk-jpl/src/mex/Gradj/Gradj.cpp (modified)
	* issm/trunk-jpl/src/mex/InterpFromGridToMesh/InterpFromGridToMesh.cpp (modified)
	* issm/trunk-jpl/src/mex/InterpFromMesh2d/InterpFromMesh2d.cpp (modified)
	* issm/trunk-jpl/src/mex/InterpFromMeshToMesh3d/InterpFromMeshToMesh3d.cpp (modified)
	* issm/trunk-jpl/src/mex/Makefile.am (modified)
	* issm/trunk-jpl/src/mex/Orth/Orth.cpp (modified)
	* issm/trunk-jpl/src/mex/PointCloudFindNeighbors/PointCloudFindNeighbors.cpp (modified)
	* issm/trunk-jpl/src/mex/ResetCoordinateSystem/ResetCoordinateSystem.cpp (modified)
	* issm/trunk-jpl/src/mex/Solver/Solver.cpp (modified)

	Completed separation of Petsc from ISSM. Matrix and Vector
	are now ...


Wed, 14 Mar 2012 02:29:55 GMT Eric.Larour [11694]
	* issm/trunk-jpl/src/c/shared/Alloc/alloc.cpp (modified)

	Improved quick fix, going back to Mathieu's bug fix


Wed, 14 Mar 2012 02:26:32 GMT Eric.Larour [11693]
	* issm/trunk-jpl/src/c/shared/Alloc/alloc.cpp (modified)

	Do not delete Matrix and Object. Matlab API bug


Wed, 14 Mar 2012 00:26:08 GMT Mathieu Morlighem [11692]
	* issm/trunk-jpl/src/c/shared/Alloc/alloc.cpp (modified)

	temporary fix


Tue, 13 Mar 2012 23:49:10 GMT Mathieu Morlighem [11691]
	* issm/trunk-jpl/src/c/modules/SystemMatricesx/SystemMatricesx.cpp (modified)

	Changed to xdelete


Tue, 13 Mar 2012 22:19:55 GMT Mathieu Morlighem [11690]
	* issm/trunk-jpl/src/c/objects/Numerics/Vector.cpp (modified)

	minor


Tue, 13 Mar 2012 22:18:54 GMT Mathieu Morlighem [11689]
	* issm/trunk-jpl/src/c/objects/Numerics/Vector.cpp (modified)

	minor


Tue, 13 Mar 2012 22:13:35 GMT Mathieu Morlighem [11688]
	* issm/trunk-jpl/src/c/objects/Numerics/Vector.cpp (modified)

	Fixed infinite loop


Tue, 13 Mar 2012 16:06:30 GMT Mathieu Morlighem [11687]
	* issm/trunk-jpl/src/c/modules/Solverx/Solverx.cpp (modified)

	Fixed seg fault (obvious)


Tue, 13 Mar 2012 15:57:50 GMT Mathieu Morlighem [11686]
	* issm/trunk-jpl/src/mex/CreateNodalConstraints/CreateNodalConstraints.cpp (modified)
	* issm/trunk-jpl/src/mex/InputUpdateFromSolution/InputUpdateFromSolution.cpp (modified)
	* issm/trunk-jpl/src/mex/Mergesolutionfromftog/Mergesolutionfromftog.cpp (modified)
	* issm/trunk-jpl/src/mex/Reduceload/Reduceload.cpp (modified)
	* issm/trunk-jpl/src/mex/Reducevectorgtof/Reducevectorgtof.cpp (modified)
	* issm/trunk-jpl/src/mex/Reducevectorgtos/Reducevectorgtos.cpp (modified)
	* issm/trunk-jpl/src/mex/Solver/Solver.cpp (modified)
	* issm/trunk-jpl/src/mex/SystemMatrices/SystemMatrices.cpp (modified)
	* issm/trunk-jpl/src/mex/UpdateDynamicConstraints/UpdateDynamicConstraints.cpp (modified)

	Added xdeletes instead of deletes for vectors and matrices


Mon, 12 Mar 2012 23:59:32 GMT Eric.Larour [11685]
	* issm/trunk-jpl/src/c/modules/Reduceloadx/Reduceloadx.cpp (modified)

	Using new delete routines to fix segfault


Mon, 12 Mar 2012 21:40:42 GMT cborstad [11684]
	* issm/branches/trunk-jpl-damage (modified)
	* issm/branches/trunk-jpl-damage/configs/config-macosx64-larour-ad.sh (copied)
	* issm/branches/trunk-jpl-damage/configs/config-macosx64-larour.sh (copied)
	* issm/branches/trunk-jpl-damage/configs/config-macosx64-nicole.sh (copied)
	* issm/branches/trunk-jpl-damage/configure.ac (modified)
	* issm/branches/trunk-jpl-damage/cron (modified)
	* issm/branches/trunk-jpl-damage/cron/configs/linux64_borstad_daily (copied)
	* issm/branches/trunk-jpl-damage/cron/configs/linux64_borstad_nightly (copied)
	* issm/branches/trunk-jpl-damage/cron/configs/linux64_borstad_ucitrunk (copied)
	* issm/branches/trunk-jpl-damage/cron/configs/linux64_borstad_validation (copied)
	* issm/branches/trunk-jpl-damage/cron/configs/linux64_schlegel_daily (modified)
	* issm/branches/trunk-jpl-damage/cron/configs/linux64_schlegel_nightly (modified)
	* issm/branches/trunk-jpl-damage/cron/configs/linux64_schlegel_ucitrunk (modified)
	* issm/branches/trunk-jpl-damage/cron/configs/linux64_schlegel_validation (modified)
	* issm/branches/trunk-jpl-damage/cron/configs/macosx64_borstad (copied)
	* issm/branches/trunk-jpl-damage/cron/configs/macosx64_borstad_daily (copied)
	* issm/branches/trunk-jpl-damage/cron/configs/macosx64_larour (modified)
	* issm/branches/trunk-jpl-damage/cron/configs/macosx64_larour_validation (copied)
	* issm/branches/trunk-jpl-damage/cron/configs/macosx64_schlegel (copied)
	* issm/branches/trunk-jpl-damage/cron/configs/macosx64_schlegel_daily (copied)
	* issm/branches/trunk-jpl-damage/cron/cronfiles/mac_cronfile (modified)
	* issm/branches/trunk-jpl-damage/cron/nightlyrun.sh (modified)
	* issm/branches/trunk-jpl-damage/etc/environment.sh (modified)
	* issm/branches/trunk-jpl-damage/etc/environment_variables.sh (modified)
	* issm/branches/trunk-jpl-damage/examples/Jakobshavn (copied)
	* issm/branches/trunk-jpl-damage/examples/SquareIceShelf/runme.m (modified)
	* issm/branches/trunk-jpl-damage/externalpackages/android-emulators (copied)
	* issm/branches/trunk-jpl-damage/externalpackages/android-ndk (copied)
	* issm/branches/trunk-jpl-damage/externalpackages/android-sdk (copied)
	* issm/branches/trunk-jpl-damage/externalpackages/chaco/chaco_njs_notes.txt (copied)
	* issm/branches/trunk-jpl-damage/externalpackages/dakota/dakota_njs_notes_macos64.txt (copied)
	* issm/branches/trunk-jpl-damage/externalpackages/dakota/install-macosx64.sh (modified)
	* issm/branches/trunk-jpl-damage/externalpackages/matlab/install-macosx-feras.sh (copied)
	* issm/branches/trunk-jpl-damage/externalpackages/matlab/install.sh (modified)
	* issm/branches/trunk-jpl-damage/m4/issm_options.m4 (modified)
	* issm/branches/trunk-jpl-damage/src/Makefile.am (modified)
	* issm/branches/trunk-jpl-damage/src/ad/Makefile.am (deleted)
	* issm/branches/trunk-jpl-damage/src/ad/eraselinks.sh (deleted)
	* issm/branches/trunk-jpl-damage/src/ad/softlink.sh (deleted)
	* issm/branches/trunk-jpl-damage/src/android (copied)
	* issm/branches/trunk-jpl-damage/src/c/EnumDefinitions/EnumDefinitions.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/EnumDefinitions/README (modified)
	* issm/branches/trunk-jpl-damage/src/c/EnumDefinitions/Synchronize.sh (modified)
	* issm/branches/trunk-jpl-damage/src/c/Makefile.am (modified)
	* issm/branches/trunk-jpl-damage/src/c/io/Matlab/FetchMatlabData.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/io/Matlab/WriteMatlabData.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/io/Matlab/matlabio.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/CreateJacobianMatrixx/CreateJacobianMatrixx.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/CreateJacobianMatrixx/CreateJacobianMatrixx.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/CreateNodalConstraintsx/CreateNodalConstraintsx.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/CreateNodalConstraintsx/CreateNodalConstraintsx.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/GetSolutionFromInputsx/GetSolutionFromInputsx.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/GetSolutionFromInputsx/GetSolutionFromInputsx.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/InputUpdateFromSolutionx/InputUpdateFromSolutionx.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/InputUpdateFromSolutionx/InputUpdateFromSolutionx.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/Mergesolutionfromftogx/Mergesolutionfromftogx.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/Mergesolutionfromftogx/Mergesolutionfromftogx.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/ModelProcessorx/ModelProcessorx.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/Reduceloadx/Reduceloadx.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/Reduceloadx/Reduceloadx.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/Reducevectorgtofx/Reducevectorgtofx.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/Reducevectorgtofx/Reducevectorgtofx.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/Reducevectorgtosx/Reducevectorgtosx.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/Reducevectorgtosx/Reducevectorgtosx.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/Solverx/Solverx.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/Solverx/Solverx.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/Solverx/SolverxPetsc.cpp (copied)
	* issm/branches/trunk-jpl-damage/src/c/modules/StringToEnumx/StringToEnumx.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/SystemMatricesx/SystemMatricesx.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/SystemMatricesx/SystemMatricesx.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/UpdateDynamicConstraintsx/UpdateDynamicConstraintsx.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/UpdateDynamicConstraintsx/UpdateDynamicConstraintsx.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/VecMergex/VecMergex.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/modules/VecMergex/VecMergex.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Bamg/Mesh.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Bamg/Triangle.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Bamg/Triangle.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Elements/Element.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Elements/Penta.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Elements/Penta.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Elements/Tria.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Elements/Tria.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Loads/Icefront.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Loads/Icefront.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Loads/Load.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Loads/Numericalflux.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Loads/Numericalflux.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Loads/Pengrid.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Loads/Pengrid.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Loads/Penpair.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Loads/Penpair.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Loads/Riftfront.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Loads/Riftfront.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Node.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Node.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Numerics/ElementMatrix.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Numerics/ElementMatrix.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Numerics/ElementVector.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Numerics/ElementVector.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/objects/Numerics/Matrix.cpp (copied)
	* issm/branches/trunk-jpl-damage/src/c/objects/Numerics/Matrix.h (copied)
	* issm/branches/trunk-jpl-damage/src/c/objects/Numerics/Vector.cpp (copied)
	* issm/branches/trunk-jpl-damage/src/c/objects/Numerics/Vector.h (copied)
	* issm/branches/trunk-jpl-damage/src/c/objects/objects.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/shared/Alloc/alloc.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/shared/Alloc/alloc.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/shared/Elements/elements.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/solutions/AnalysisConfiguration.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/solutions/ResetBoundaryConditions.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/solutions/convergence.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/solutions/solutions.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/solutions/steadystate_core.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/solvers/solver_adjoint_linear.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/solvers/solver_linear.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/solvers/solver_newton.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/solvers/solver_nonlinear.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/solvers/solver_stokescoupling_nonlinear.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/solvers/solver_thermal_nonlinear.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/c/toolkits/matlab/MatlabMatrixToMatrix.cpp (copied)
	* issm/branches/trunk-jpl-damage/src/c/toolkits/matlab/MatlabVectorToVector.cpp (copied)
	* issm/branches/trunk-jpl-damage/src/c/toolkits/matlab/matlabincludes.h (modified)
	* issm/branches/trunk-jpl-damage/src/c/toolkits/petsc/patches/MatlabMatrixToDoubleMatrix.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/m/classes/friction.m (modified)
	* issm/branches/trunk-jpl-damage/src/m/classes/inversion.m (modified)
	* issm/branches/trunk-jpl-damage/src/m/classes/model/model.m (modified)
	* issm/branches/trunk-jpl-damage/src/m/enum/EnumToModelField.m (modified)
	* issm/branches/trunk-jpl-damage/src/m/model/EnumToModelField.m (copied)
	* issm/branches/trunk-jpl-damage/src/m/model/SectionValues.m (modified)
	* issm/branches/trunk-jpl-damage/src/m/model/collapse.m (modified)
	* issm/branches/trunk-jpl-damage/src/m/model/mesh/bamg.m (modified)
	* issm/branches/trunk-jpl-damage/src/m/qmu/dakota_in_data.m (modified)
	* issm/branches/trunk-jpl-damage/src/m/qmu/dakota_in_write.m (modified)
	* issm/branches/trunk-jpl-damage/src/m/solutions/AnalysisConfiguration.m (modified)
	* issm/branches/trunk-jpl-damage/src/m/solutions/steadystate_core.m (modified)
	* issm/branches/trunk-jpl-damage/src/m/utils/Analysis/setcluster.m (modified)
	* issm/branches/trunk-jpl-damage/src/m/utils/Exp/manipulation (modified)
	* issm/branches/trunk-jpl-damage/src/m/utils/Exp/manipulation/Makefile.am (copied)
	* issm/branches/trunk-jpl-damage/src/m/utils/Exp/readwrite (modified)
	* issm/branches/trunk-jpl-damage/src/m/utils/Exp/readwrite/Makefile.am (copied)
	* issm/branches/trunk-jpl-damage/src/mex/CreateJacobianMatrix/CreateJacobianMatrix.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/mex/CreateNodalConstraints/CreateNodalConstraints.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/mex/GetSolutionFromInputs/GetSolutionFromInputs.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/mex/InputUpdateFromSolution/InputUpdateFromSolution.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/mex/Mergesolutionfromftog/Mergesolutionfromftog.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/mex/Reduceload/Reduceload.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/mex/Reducevectorgtof/Reducevectorgtof.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/mex/Reducevectorgtos/Reducevectorgtos.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/mex/Solver/Solver.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/mex/SystemMatrices/SystemMatrices.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/mex/UpdateDynamicConstraints/UpdateDynamicConstraints.cpp (modified)
	* issm/branches/trunk-jpl-damage/test/Archives/Archive455.mat (copied)
	* issm/branches/trunk-jpl-damage/test/Archives/Archive456.mat (copied)
	* issm/branches/trunk-jpl-damage/test/Archives/Archive457.mat (copied)
	* issm/branches/trunk-jpl-damage/test/Archives/Archive458.mat (copied)
	* issm/branches/trunk-jpl-damage/test/Archives/Archive459.mat (copied)
	* issm/branches/trunk-jpl-damage/test/Archives/Archive460.mat (copied)
	* issm/branches/trunk-jpl-damage/test/Archives/Archive461.mat (copied)
	* issm/branches/trunk-jpl-damage/test/Archives/Archive462.mat (copied)
	* issm/branches/trunk-jpl-damage/test/Archives/Archive463.mat (copied)
	* issm/branches/trunk-jpl-damage/test/Archives/Archive464.mat (copied)
	* issm/branches/trunk-jpl-damage/test/NightlyRun/IdToName.m (modified)
	* issm/branches/trunk-jpl-damage/test/NightlyRun/runme.m (modified)
	* issm/branches/trunk-jpl-damage/test/NightlyRun/test455.m (copied)
	* issm/branches/trunk-jpl-damage/test/NightlyRun/test456.m (copied)
	* issm/branches/trunk-jpl-damage/test/NightlyRun/test457.m (copied)
	* issm/branches/trunk-jpl-damage/test/NightlyRun/test458.m (copied)
	* issm/branches/trunk-jpl-damage/test/NightlyRun/test459.m (copied)
	* issm/branches/trunk-jpl-damage/test/NightlyRun/test460.m (copied)
	* issm/branches/trunk-jpl-damage/test/NightlyRun/test461.m (copied)
	* issm/branches/trunk-jpl-damage/test/NightlyRun/test462.m (copied)
	* issm/branches/trunk-jpl-damage/test/NightlyRun/test463.m (copied)
	* issm/branches/trunk-jpl-damage/test/NightlyRun/test464.m (copied)

	merged revisions 11428:11680 from trunk-jpl into branches/trunk-jpl- ...


Mon, 12 Mar 2012 19:59:22 GMT cborstad [11683]
	* issm/branches/trunk-jpl-damage/src/c/modules/StringToEnumx/StringToEnumx.cpp (modified)
	* issm/branches/trunk-jpl-damage/src/m/enum/EnumToModelField.m (modified)
	* issm/branches/trunk-jpl-damage/src/m/model/plot/applyoptions.m (modified)

	misc changes prior to merging from trunk-jpl


Mon, 12 Mar 2012 18:13:44 GMT Mathieu Morlighem [11682]
	* issm/trunk/m4/issm_options.m4 (modified)

	Use 64 bit flags for matlab 7.9 and higher


Mon, 12 Mar 2012 17:17:51 GMT Mathieu Morlighem [11681]
	* issm/trunk/m4/issm_options.m4 (modified)

	removed largeArray flag, making compilation fail on most macs


Mon, 12 Mar 2012 16:39:30 GMT Eric.Larour [11680]
	* issm/trunk-jpl/m4/issm_options.m4 (modified)

	Simplifying dakota glitch


Mon, 12 Mar 2012 16:35:33 GMT Eric.Larour [11679]
	* issm/trunk-jpl/src/c/Makefile.am (modified)
	* issm/trunk-jpl/src/c/modules/CreateJacobianMatrixx/CreateJacobianMatrixx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/CreateJacobianMatrixx/CreateJacobianMatrixx.h (modified)
	* issm/trunk-jpl/src/c/modules/CreateNodalConstraintsx/CreateNodalConstraintsx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/CreateNodalConstraintsx/CreateNodalConstraintsx.h (modified)
	* issm/trunk-jpl/src/c/modules/GetSolutionFromInputsx/GetSolutionFromInputsx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/GetSolutionFromInputsx/GetSolutionFromInputsx.h (modified)
	* issm/trunk-jpl/src/c/modules/InputUpdateFromSolutionx/InputUpdateFromSolutionx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/InputUpdateFromSolutionx/InputUpdateFromSolutionx.h (modified)
	* issm/trunk-jpl/src/c/modules/Mergesolutionfromftogx/Mergesolutionfromftogx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/Mergesolutionfromftogx/Mergesolutionfromftogx.h (modified)
	* issm/trunk-jpl/src/c/modules/Reduceloadx/Reduceloadx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/Reduceloadx/Reduceloadx.h (modified)
	* issm/trunk-jpl/src/c/modules/Reducevectorgtofx/Reducevectorgtofx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/Reducevectorgtofx/Reducevectorgtofx.h (modified)
	* issm/trunk-jpl/src/c/modules/Reducevectorgtosx/Reducevectorgtosx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/Reducevectorgtosx/Reducevectorgtosx.h (modified)
	* issm/trunk-jpl/src/c/modules/Solverx/Solverx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/Solverx/Solverx.h (modified)
	* issm/trunk-jpl/src/c/modules/Solverx/SolverxPetsc.cpp (added)
	* issm/trunk-jpl/src/c/modules/SystemMatricesx/SystemMatricesx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/SystemMatricesx/SystemMatricesx.h (modified)
	* issm/trunk-jpl/src/c/modules/UpdateDynamicConstraintsx/UpdateDynamicConstraintsx.cpp (modified)
	* issm/trunk-jpl/src/c/modules/UpdateDynamicConstraintsx/UpdateDynamicConstraintsx.h (modified)
	* issm/trunk-jpl/src/c/modules/VecMergex/VecMergex.cpp (modified)
	* issm/trunk-jpl/src/c/modules/VecMergex/VecMergex.h (modified)
	* issm/trunk-jpl/src/c/objects/Elements/Element.h (modified)
	* issm/trunk-jpl/src/c/objects/Elements/Penta.cpp (modified)
	* issm/trunk-jpl/src/c/objects/Elements/Penta.h (modified)
	* issm/trunk-jpl/src/c/objects/Elements/Tria.cpp (modified)
	* issm/trunk-jpl/src/c/objects/Elements/Tria.h (modified)
	* issm/trunk-jpl/src/c/objects/Loads/Icefront.cpp (modified)
	* issm/trunk-jpl/src/c/objects/Loads/Icefront.h (modified)
	* issm/trunk-jpl/src/c/objects/Loads/Load.h (modified)
	* issm/trunk-jpl/src/c/objects/Loads/Numericalflux.cpp (modified)
	* issm/trunk-jpl/src/c/objects/Loads/Numericalflux.h (modified)
	* issm/trunk-jpl/src/c/objects/Loads/Pengrid.cpp (modified)
	* issm/trunk-jpl/src/c/objects/Loads/Pengrid.h (modified)
	* issm/trunk-jpl/src/c/objects/Loads/Penpair.cpp (modified)
	* issm/trunk-jpl/src/c/objects/Loads/Penpair.h (modified)
	* issm/trunk-jpl/src/c/objects/Loads/Riftfront.cpp (modified)
	* issm/trunk-jpl/src/c/objects/Loads/Riftfront.h (modified)
	* issm/trunk-jpl/src/c/objects/Node.cpp (modified)
	* issm/trunk-jpl/src/c/objects/Node.h (modified)
	* issm/trunk-jpl/src/c/objects/Numerics/ElementMatrix.cpp (modified)
	* issm/trunk-jpl/src/c/objects/Numerics/ElementMatrix.h (modified)
	* issm/trunk-jpl/src/c/objects/Numerics/ElementVector.cpp (modified)
	* issm/trunk-jpl/src/c/objects/Numerics/ElementVector.h (modified)
	* issm/trunk-jpl/src/c/objects/Numerics/Matrix.cpp (modified)
	* issm/trunk-jpl/src/c/objects/Numerics/Matrix.h (modified)
	* issm/trunk-jpl/src/c/objects/Numerics/Vector.cpp (modified)
	* issm/trunk-jpl/src/c/objects/Numerics/Vector.h (modified)
	* issm/trunk-jpl/src/c/shared/Alloc/alloc.cpp (modified)
	* issm/trunk-jpl/src/c/shared/Alloc/alloc.h (modified)
	* issm/trunk-jpl/src/c/solutions/ResetBoundaryConditions.cpp (modified)
	* issm/trunk-jpl/src/c/solutions/convergence.cpp (modified)
	* issm/trunk-jpl/src/c/solutions/solutions.h (modified)
	* issm/trunk-jpl/src/c/solvers/solver_adjoint_linear.cpp (modified)
	* issm/trunk-jpl/src/c/solvers/solver_linear.cpp (modified)
	* issm/trunk-jpl/src/c/solvers/solver_newton.cpp (modified)
	* issm/trunk-jpl/src/c/solvers/solver_nonlinear.cpp (modified)
	* issm/trunk-jpl/src/c/solvers/solver_stokescoupling_nonlinear.cpp (modified)
	* issm/trunk-jpl/src/c/solvers/solver_thermal_nonlinear.cpp (modified)
	* issm/trunk-jpl/src/mex/CreateJacobianMatrix/CreateJacobianMatrix.cpp (modified)
	* issm/trunk-jpl/src/mex/CreateNodalConstraints/CreateNodalConstraints.cpp (modified)
	* issm/trunk-jpl/src/mex/GetSolutionFromInputs/GetSolutionFromInputs.cpp (modified)
	* issm/trunk-jpl/src/mex/InputUpdateFromSolution/InputUpdateFromSolution.cpp (modified)
	* issm/trunk-jpl/src/mex/Mergesolutionfromftog/Mergesolutionfromftog.cpp (modified)
	* issm/trunk-jpl/src/mex/Reduceload/Reduceload.cpp (modified)
	* issm/trunk-jpl/src/mex/Reducevectorgtof/Reducevectorgtof.cpp (modified)
	* issm/trunk-jpl/src/mex/Reducevectorgtos/Reducevectorgtos.cpp (modified)
	* issm/trunk-jpl/src/mex/Solver/Solver.cpp (modified)
	* issm/trunk-jpl/src/mex/SystemMatrices/SystemMatrices.cpp (modified)
	* issm/trunk-jpl/src/mex/UpdateDynamicConstraints/UpdateDynamicConstraints.cpp (modified)

	Large commit, to strip out Petsc from the code. Created new Matrix ...


Fri, 09 Mar 2012 18:42:07 GMT Mathieu Morlighem [11678]
	* issm/trunk-jpl/examples/Jakobshavn/Jks.par (modified)

	simplified


Fri, 09 Mar 2012 18:38:18 GMT Mathieu Morlighem [11677]
	* issm/trunk-jpl/examples/SquareIceShelf/runme.m (modified)

	reverted back to normal


Fri, 09 Mar 2012 18:37:16 GMT Mathieu Morlighem [11676]
	* issm/trunk-jpl/examples/Jakobshavn (added)
	* issm/trunk-jpl/examples/Jakobshavn/Domain.exp (added)
	* issm/trunk-jpl/examples/Jakobshavn/Front.exp (added)
	* issm/trunk-jpl/examples/Jakobshavn/Jks.par (added)
	* issm/trunk-jpl/examples/Jakobshavn/WeakB.exp (added)
	* issm/trunk-jpl/examples/Jakobshavn/runme.m (added)
	* issm/trunk-jpl/examples/SquareIceShelf/runme.m (modified)

	Added Jks tutorial


Fri, 09 Mar 2012 18:05:33 GMT Mathieu Morlighem [11675]
	* issm/trunk-jpl/src/c/io/Matlab/FetchMatlabData.cpp (modified)
	* issm/trunk-jpl/src/c/toolkits/petsc/patches/MatlabMatrixToDoubleMatrix.cpp (modified)

	Added support for 'single' matlab format


Thu, 08 Mar 2012 23:40:27 GMT seroussi [11674]
	* issm/trunk-jpl/src/m/classes/friction.m (modified)

	minor display of friction


Thu, 08 Mar 2012 20:07:44 GMT Eric.Larour [11673]
	* issm/trunk-jpl/etc/environment.sh (modified)
	* issm/trunk-jpl/etc/environment_variables.sh (modified)
	* issm/trunk-jpl/externalpackages/android-emulators (added)
	* issm/trunk-jpl/externalpackages/android-ndk (added)
	* issm/trunk-jpl/externalpackages/android-ndk/android-ndk-r7b-darwin-x86.tar.bz2 (added)
	* issm/trunk-jpl/externalpackages/android-ndk/install.sh (added)
	* issm/trunk-jpl/externalpackages/android-sdk (added)
	* issm/trunk-jpl/externalpackages/android-sdk/android-sdk-r16-macosx.zip (added)
	* issm/trunk-jpl/externalpackages/android-sdk/apache-ant-1.8.2-bin.zip (added)
	* issm/trunk-jpl/externalpackages/android-sdk/install.sh (added)

	Setting up the externalpackages for the android build.


Thu, 08 Mar 2012 20:07:37 GMT Eric.Larour [11672]
	* issm/trunk-jpl/src/android (added)

	New android directory for development. Not connected


Thu, 08 Mar 2012 20:03:08 GMT Eric.Larour [11671]
	* issm/trunk-jpl/externalpackages/android (deleted)

	Not needed anymore


Thu, 08 Mar 2012 03:00:56 GMT Eric.Larour [11670]
	* issm/trunk-jpl/src/c/Makefile.am (modified)
	* issm/trunk-jpl/src/c/io/Matlab/FetchMatlabData.cpp (modified)
	* issm/trunk-jpl/src/c/io/Matlab/WriteMatlabData.cpp (modified)
	* issm/trunk-jpl/src/c/io/Matlab/matlabio.h (modified)
	* issm/trunk-jpl/src/c/objects/Numerics/Matrix.cpp (added)
	* issm/trunk-jpl/src/c/objects/Numerics/Matrix.h (added)
	* issm/trunk-jpl/src/c/objects/Numerics/Vector.cpp (added)
	* issm/trunk-jpl/src/c/objects/Numerics/Vector.h (added)
	* issm/trunk-jpl/src/c/objects/objects.h (modified)
	* issm/trunk-jpl/src/c/toolkits/matlab/MatlabMatrixToMatrix.cpp (added)
	* issm/trunk-jpl/src/c/toolkits/matlab/MatlabVectorToVector.cpp (added)
	* issm/trunk-jpl/src/c/toolkits/matlab/matlabincludes.h (modified)

	Starting abstraction of Matrix and Vector objects, to step away from ...


Thu, 08 Mar 2012 02:59:03 GMT Eric.Larour [11669]
	* issm/trunk-jpl/m4/issm_options.m4 (modified)

	Added adolc package


Thu, 08 Mar 2012 00:35:40 GMT schlegel [11668]
	* issm/trunk-jpl/externalpackages/windows/InstallInstructions.txt (modified)

	fix some typos


Wed, 07 Mar 2012 22:42:49 GMT cborstad [11667]
	* issm/trunk-jpl/cron/configs/linux64_borstad_daily (added)
	* issm/trunk-jpl/cron/configs/linux64_borstad_nightly (added)
	* issm/trunk-jpl/cron/configs/linux64_borstad_ucitrunk (added)
	* issm/trunk-jpl/cron/configs/linux64_borstad_validation (added)
	* issm/trunk-jpl/cron/configs/macosx64_borstad (added)
	* issm/trunk-jpl/cron/configs/macosx64_borstad_daily (added)

	borstad config files for nightly runs


Wed, 07 Mar 2012 22:21:26 GMT Eric.Larour [11666]
	* issm/trunk-jpl/configure.ac (modified)

	Took out ad/Makefile.am in configure.ac


Wed, 07 Mar 2012 22:19:54 GMT Eric.Larour [11665]
	* issm/trunk-jpl/src/Makefile.am (modified)
	* issm/trunk-jpl/src/ad/Makefile.am (deleted)
	* issm/trunk-jpl/src/ad/eraselinks.sh (deleted)
	* issm/trunk-jpl/src/ad/softlink.sh (deleted)
	* issm/trunk-jpl/src/c/Makefile.am (modified)

	Took out Makefile.am in ad. Now resides in the main ...


Wed, 07 Mar 2012 22:00:50 GMT Mathieu Morlighem [11664]
	* issm/trunk-jpl/src/m/classes/model/model.m (modified)

	better recovery process


Wed, 07 Mar 2012 21:56:09 GMT Eric.Larour [11663]
	* issm/trunk-jpl/configs/config-macosx64-larour-ad.sh (added)
	* issm/trunk-jpl/cron/configs/macosx64_larour_validation (modified)

	Added new configuration file + new validation test configuration file


Wed, 07 Mar 2012 21:55:47 GMT Eric.Larour [11662]
	* issm/trunk-jpl/etc/environment.sh (modified)
	* issm/trunk-jpl/etc/environment_variables.sh (modified)

	Added PackageMaker


Wed, 07 Mar 2012 21:54:30 GMT Eric.Larour [11661]
	* issm/trunk-jpl/packagers/macosx/ISSM.pmdoc/01issm-contents.xml (modified)
	* issm/trunk-jpl/packagers/macosx/ISSM.pmdoc/02bin-contents.xml (modified)
	* issm/trunk-jpl/packagers/macosx/ISSM.pmdoc/02bin.xml (modified)
	* issm/trunk-jpl/packagers/macosx/ISSM.pmdoc/03test-contents.xml (modified)

	Some tweaking of permissions, not done yet


Wed, 07 Mar 2012 21:53:07 GMT Eric.Larour [11660]
	* issm/trunk-jpl/src/c/Makefile.am (modified)

	Minor comment


Wed, 07 Mar 2012 21:52:47 GMT Eric.Larour [11659]
	* issm/trunk-jpl/src/m/classes/model/model.m (modified)

	Updated loading of old models that include rifts


Wed, 07 Mar 2012 21:52:17 GMT Eric.Larour [11658]
	* issm/trunk-jpl/src/ad/Makefile.am (modified)

	Update of Makefile.am to match src/c/Makefile.am


Wed, 07 Mar 2012 21:40:02 GMT Eric.Larour [11657]
	* issm/trunk-jpl/src/m/utils/Exp/manipulation (modified)
	* issm/trunk-jpl/src/m/utils/Exp/readwrite (modified)

	Ignore Makefile


Wed, 07 Mar 2012 21:38:04 GMT Mathieu Morlighem [11656]
	* issm/trunk-jpl/src/c/Makefile.am (modified)
	* issm/trunk-jpl/src/c/objects/Elements/Element.h (modified)
	* issm/trunk-jpl/src/c/objects/Elements/Penta.cpp (modified)
	* issm/trunk-jpl/src/c/objects/Elements/Penta.h (modified)
	* issm/trunk-jpl/src/c/objects/Elements/Tria.cpp (modified)
	* issm/trunk-jpl/src/c/objects/Elements/Tria.h (modified)
	* issm/trunk-jpl/src/c/objects/Loads/Pengrid.cpp (modified)
	* issm/trunk-jpl/src/c/objects/Loads/Pengrid.h (modified)
	* issm/trunk-jpl/src/c/shared/Elements/elements.h (modified)

	updated compilation flag definition for ADIC


Wed, 07 Mar 2012 01:37:17 GMT schlegel [11655]
	* issm/trunk-jpl/cron/configs/macosx64_schlegel (modified)
	* issm/trunk-jpl/cron/configs/macosx64_schlegel_daily (modified)

	remove more dakota tests


Wed, 07 Mar 2012 00:19:11 GMT schlegel [11654]
	* issm/trunk-jpl/cron/configs/macosx64_schlegel_daily (added)

	remove crashing dakota tests


Wed, 07 Mar 2012 00:18:49 GMT schlegel [11653]
	* issm/trunk-jpl/cron/configs/macosx64_schlegel (modified)

	remove crashing dakota tests


Wed, 07 Mar 2012 00:05:32 GMT habbalf [11652]
	* issm/trunk-jpl/src/m/model/mesh/bamg.m (modified)

	fixed white space...will change back if you don't like it


Tue, 06 Mar 2012 23:58:07 GMT habbalf [11651]
	* issm/trunk-jpl/src/m/model/mesh/bamg.m (modified)

	fixed typo


Tue, 06 Mar 2012 23:51:18 GMT habbalf [11650]
	* issm/trunk-jpl/src/m/model/mesh/bamg.m (modified)

	fixed typo