#--------------------# # ISSM Configuration # #--------------------# MATLAB_PATH="/Applications/MATLAB_R2018a.app" ISSM_CONFIG='\ --prefix=${ISSM_DIR} \ --disable-static \ --enable-development \ --enable-debugging \ --with-numthreads=4 \ --with-matlab-dir=${MATLAB_PATH} \ --with-python-dir=/System/Library/Frameworks/Python.framework/Versions/2.7 \ --with-python-numpy-dir=/System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python/numpy \ --with-fortran-lib="-L/usr/local/Cellar/gcc/10.2.0/lib/gcc/10 -lgfortran" \ --with-mpi-include=${ISSM_DIR}/externalpackages/petsc/install/include \ --with-mpi-libflags="-L${ISSM_DIR}/externalpackages/petsc/install/lib -lmpi -lmpicxx -lmpifort" \ --with-blas-lapack-dir=${ISSM_DIR}/externalpackages/petsc/install \ --with-metis-dir=${ISSM_DIR}/externalpackages/petsc/install \ --with-scalapack-dir=${ISSM_DIR}/externalpackages/petsc/install \ --with-mumps-dir=${ISSM_DIR}/externalpackages/petsc/install \ --with-hdf5-dir=${ISSM_DIR}/externalpackages/petsc/install \ --with-petsc-dir=${ISSM_DIR}/externalpackages/petsc/install \ --with-gsl-dir=${ISSM_DIR}/externalpackages/gsl/install \ --with-boost-dir=${ISSM_DIR}/externalpackages/boost/install \ --with-dakota-dir=${ISSM_DIR}/externalpackages/dakota/install \ --with-triangle-dir=${ISSM_DIR}/externalpackages/triangle/install \ --with-chaco-dir=${ISSM_DIR}/externalpackages/chaco/install \ --with-m1qn3-dir=${ISSM_DIR}/externalpackages/m1qn3/install \ --with-semic-dir=${ISSM_DIR}/externalpackages/semic/install \ ' #-------------------# # External Packages # #-------------------# #List of external pakages to be installed and their installation scripts EXTERNALPACKAGES=" autotools install-mac.sh cmake install.sh petsc install-3.12-mac.sh gsl install.sh boost install-1.7-mac.sh dakota install-6.2-mac.sh curl install-7-mac.sh netcdf install-4.7-parallel.sh proj install-6.2.sh gdal install-3-python.sh gshhg install.sh gmt install-6-mac.sh gmsh install-4.sh triangle install-mac.sh chaco install.sh m1qn3 install.sh semic install.sh shell2junit install.sh " #---------# # Testing # #---------# # Test suites MATLAB_TEST=1 PYTHON_TEST=1 JAVASCRIPT_TEST=0 EXAMPLES_TEST=0 # Number of CPUs used in ISSM compilation # # NOTE: One is usually safer as some packages are very sensitive to parallel # compilation # NUMCPUS_INSTALL=4 # Number of CPUs used in the nightly runs NUMCPUS_RUN=2 # Nightly run options # # See documentation in test/NightlyRun/runme.* for more information. # # NOTE: # - Errors are large for tests 234, 235, 418, and 420 under MATLAB # - Tests 444 and 445 fail intermittently under MATLAB with "Index exceeds array bounds." # - Errors are large for tests 234 418 and 420 under Python # - See test417.py for why it is excluded # - Test 444 fails intermittently under Python with "IndexError: list index out of range" # - Excluding 2006 until it can be debugged (file I/O) # MATLAB_NROPTIONS="'id',[IdFromString('Dakota')],'exclude',[234 235 418 420 444 445 2006]" PYTHON_NROPTIONS="--include_name 'Dakota' --exclude 234 417 418 420 444 445 2006"