AM_CPPFLAGS = @DAKOTAINCL@ @MATLABINCL@ @PETSCINCL@ @MPIINCL@ @SPOOLESINCL@ @METISINCL@ @TRIANGLEINCL@ @CHACOINCL@ @SCOTCHINCL@ @SHAPELIBINCL@ @BOOSTINCL@ @PYTHONINCL@ @PYTHON_NUMPYINCL@

EXEEXT=$(MATLABWRAPPEREXT)

#Modules {{{1
if MODULES
lib_LTLIBRARIES =  AverageFilter.la\
			       BamgMesher.la\
				   BamgConvertMesh.la\
				   BamgTriangulate.la\
				   ContourToMesh.la\
				   ContourToNodes.la\
				   ElementConnectivity.la\
				   EnumToString.la\
				   Exp2Kml.la\
				   HoleFiller.la\
				   InternalFront.la\
				   InterpFromGridToMesh.la\
				   InterpFromMeshToMesh2d.la\
				   InterpFromMeshToMesh3d.la\
				   InterpFromMeshToGrid.la\
				   InterpFromMesh2d.la\
				   KMLFileRead.la\
				   KMLMeshWrite.la\
				   KMLOverlay.la\
				   Kml2Exp.la\
				   Kriging.la\
				   Ll2xy.la\
				   NodeConnectivity.la\
				   MeshPartition.la\
				   MeshProfileIntersection.la\
				   PointCloudFindNeighbors.la\
				   PropagateFlagsFromConnectivity.la\
				   Shp2Kml.la\
				   StringToEnum.la\
				   TriaSearch.la\
				   TriMesh.la\
				   TriMeshProcessRifts.la\
				   Scotch.la\
				   Xy2ll.la\
                   Chaco.la
endif 
#}}}
#Flags and libraries {{{1
if SHAREDLIBS
deps = ../../c/libISSMCore.la ../../c/libISSMModules.la
else
deps = ../../c/libISSMCore.a ../../c/libISSMModules.a
endif

deps +=  $(MATHLIB) ${MEXLIB}

#$(TRIANGLELIB) $(PETSCLIB) $(FLIBS) $(PLAPACKLIB) $(SPOOLESLIB) $(MUMPSLIB) $(SUPERLULIB) $(SPAILIB) $(PROMETHEUSLIB) $(PASTIXLIB) $(SCALAPACKLIB) $(BLACSLIB) $(HYPRELIB) $(MLLIB) $(DAKOTALIB) $(METISLIB) $(CHACOLIB) $(SCOTCHLIB) $(BLASLAPACKLIB) $(MPILIB) $(FORTRANLIB) $(GRAPHICSLIB) $(MULTITHREADINGLIB) $(SHAPELIBLIB) $(GSLLIB) 

#Triangle library
AM_CXXFLAGS =  -DTRILIBRARY -DANSI_DECLARATORS -DNO_TIMER

#Matlab part
AM_LDFLAGS = $(MEXLINK) -shrext ${EXEEXT} -module
if VERSION
AM_LDFLAGS +=
else
AM_LDFLAGS += -avoid-version
endif
if SHAREDLIBS
deps += ../../c/libISSMMatlab.la 
else
deps += ../../c/libISSMMatlab.a
AM_LDFLAGS += --no-warnings 
endif

AM_CXXFLAGS +=  -D_HAVE_MATLAB_MODULES_ -D_GNU_SOURCE -fPIC -fno-omit-frame-pointer -pthread 

######################################################################################
# Circular dependencies may not be necessary here.
#deps += ../../c/libISSMCore.a 
#if CIRCULAR_DEPENDENCIES
#deps += $(TRIANGLELIB) $(PETSCLIB) $(FLIBS) $(PLAPACKLIB) $(SPOOLESLIB) $(MUMPSLIB) $(SUPERLULIB) $(SPAILIB) $(PROMETHEUSLIB) $(PASTIXLIB) $(SCALAPACKLIB) $(BLACSLIB) $(HYPRELIB) $(MLLIB) $(DAKOTALIB) $(METISLIB) $(CHACOLIB) $(SCOTCHLIB) $(BLASLAPACKLIB) $(MPILIB) $(MATHLIB) $(FORTRANLIB) $(GRAPHICSLIB) $(MULTITHREADINGLIB) $(SHAPELIBLIB) $(GSLLIB)
#endif
######################################################################################

if SHAREDLIBS
deps +=
else
deps += ../../c/libISSMModules.a ../../c/libISSMCore.a
endif

#Optimization flags:
AM_CXXFLAGS += $(CXXOPTFLAGS) 
#}}}

#Bin sources {{{1
AverageFilter_la_SOURCES = ../AverageFilter/AverageFilter.cpp\
			  ../AverageFilter/AverageFilter.h
AverageFilter_la_LIBADD = ${deps} $(MPILIB) $(PETSCLIB)

BamgMesher_la_SOURCES = ../BamgMesher/BamgMesher.cpp\
					../BamgMesher/BamgMesher.h
BamgMesher_la_LIBADD = ${deps} $(MPILIB) $(PETSCLIB)

BamgConvertMesh_la_SOURCES = ../BamgConvertMesh/BamgConvertMesh.cpp\
					../BamgConvertMesh/BamgConvertMesh.h
BamgConvertMesh_la_LIBADD = ${deps} $(MPILIB) $(PETSCLIB)

BamgTriangulate_la_SOURCES = ../BamgTriangulate/BamgTriangulate.cpp\
								  ../BamgTriangulate/BamgTriangulate.h
BamgTriangulate_la_LIBADD = ${deps} $(MPILIB) $(PETSCLIB)

Chaco_la_SOURCES = ../Chaco/Chaco.cpp\
					../Chaco/Chaco.h
Chaco_la_LIBADD = ${deps} $(MPILIB) $(PETSCLIB) $(CHACOLIB)

ContourToMesh_la_SOURCES = ../ContourToMesh/ContourToMesh.cpp\
			               ../ContourToMesh/ContourToMesh.h
ContourToMesh_la_LIBADD = ${deps} $(MPILIB) $(PETSCLIB) $(MULTITHREADINGLIB)

ContourToNodes_la_SOURCES = ../ContourToNodes/ContourToNodes.cpp\
			  ../ContourToNodes/ContourToNodes.h
ContourToNodes_la_LIBADD = ${deps} $(MPILIB) $(PETSCLIB)

ElementConnectivity_la_SOURCES = ../ElementConnectivity/ElementConnectivity.cpp\
			  ../ElementConnectivity/ElementConnectivity.h
ElementConnectivity_la_LIBADD = ${deps} $(MPILIB) $(PETSCLIB)

EnumToString_la_SOURCES = ../EnumToString/EnumToString.cpp\
			  ../EnumToString/EnumToString.h
EnumToString_la_LIBADD = ${deps} $(MPILIB) $(PETSCLIB)

StringToEnum_la_SOURCES = ../StringToEnum/StringToEnum.cpp\
			  ../StringToEnum/StringToEnum.h
StringToEnum_la_LIBADD = ${deps} $(MPILIB) $(PETSCLIB)

HoleFiller_la_SOURCES = ../HoleFiller/HoleFiller.cpp\
			  ../HoleFiller/HoleFiller.h
HoleFiller_la_LIBADD = ${deps} $(MPILIB) $(PETSCLIB) 

InternalFront_la_SOURCES = ../InternalFront/InternalFront.cpp\
										 ../InternalFront/InternalFront.h
InternalFront_la_LIBADD = ${deps} $(MPILIB) $(PETSCLIB)

InterpFromGridToMesh_la_SOURCES = ../InterpFromGridToMesh/InterpFromGridToMesh.cpp\
			  ../InterpFromGridToMesh/InterpFromGridToMesh.h
InterpFromGridToMesh_la_LIBADD = ${deps} $(MPILIB) $(PETSCLIB) $(MULTITHREADINGLIB)

InterpFromMeshToMesh2d_la_SOURCES = ../InterpFromMeshToMesh2d/InterpFromMeshToMesh2d.cpp\
							../InterpFromMeshToMesh2d/InterpFromMeshToMesh2d.h
InterpFromMeshToMesh2d_la_LIBADD = ${deps} $(MPILIB) $(PETSCLIB) $(MULTITHREADINGLIB)

InterpFromMeshToMesh3d_la_SOURCES = ../InterpFromMeshToMesh3d/InterpFromMeshToMesh3d.cpp\
									../InterpFromMeshToMesh3d/InterpFromMeshToMesh3d.h
InterpFromMeshToMesh3d_la_LIBADD = ${deps} $(MPILIB) $(PETSCLIB)

InterpFromMeshToGrid_la_SOURCES = ../InterpFromMeshToGrid/InterpFromMeshToGrid.cpp\
									../InterpFromMeshToGrid/InterpFromMeshToGrid.h
InterpFromMeshToGrid_la_LIBADD = ${deps} $(MPILIB) $(PETSCLIB)

InterpFromMesh2d_la_SOURCES = ../InterpFromMesh2d/InterpFromMesh2d.cpp\
									../InterpFromMesh2d/InterpFromMesh2d.h
InterpFromMesh2d_la_LIBADD = ${deps} $(MPILIB) $(PETSCLIB) $(MULTITHREADINGLIB)

KMLFileRead_la_SOURCES = ../KMLFileRead/KMLFileRead.cpp\
			  ../KMLFileRead/KMLFileRead.h
KMLFileRead_la_LIBADD = ${deps} $(MPILIB) $(PETSCLIB)

KMLMeshWrite_la_SOURCES = ../KMLMeshWrite/KMLMeshWrite.cpp\
			  ../KMLMeshWrite/KMLMeshWrite.h
KMLMeshWrite_la_LIBADD = ${deps} $(MPILIB) $(PETSCLIB)

KMLOverlay_la_SOURCES = ../KMLOverlay/KMLOverlay.cpp\
			  ../KMLOverlay/KMLOverlay.h
KMLOverlay_la_LIBADD = ${deps} $(MPILIB) $(PETSCLIB)

Xy2ll_la_SOURCES = ../Xy2ll/Xy2ll.cpp\
			  ../Xy2ll/Xy2ll.h
Xy2ll_la_LIBADD = ${deps} $(MPILIB) $(PETSCLIB)

Ll2xy_la_SOURCES = ../Ll2xy/Ll2xy.cpp\
			  ../Ll2xy/Ll2xy.h
Ll2xy_la_LIBADD = ${deps} $(MPILIB) $(PETSCLIB)

Exp2Kml_la_SOURCES = ../Exp2Kml/Exp2Kml.cpp\
			  ../Exp2Kml/Exp2Kml.h
Exp2Kml_la_LIBADD = ${deps} $(MPILIB) $(PETSCLIB)

Kml2Exp_la_SOURCES = ../Kml2Exp/Kml2Exp.cpp\
			  ../Kml2Exp/Kml2Exp.h
Kml2Exp_la_LIBADD = ${deps} $(MPILIB) $(PETSCLIB)

Kriging_la_SOURCES = ../Kriging/Kriging.cpp\
						../Kriging/Kriging.h
Kriging_la_LIBADD = ${deps} $(MPILIB) $(PETSCLIB) $(GSLLIB) $(MULTITHREADINGLIB)

MeshPartition_la_SOURCES = ../MeshPartition/MeshPartition.cpp\
			  ../MeshPartition/MeshPartition.h
MeshPartition_la_LIBADD = ${deps} $(MPILIB) $(PETSCLIB) $(METISLIB)

MeshProfileIntersection_la_SOURCES = ../MeshProfileIntersection/MeshProfileIntersection.cpp\
			  ../MeshProfileIntersection/MeshProfileIntersection.h
MeshProfileIntersection_la_LIBADD = ${deps} $(MPILIB) $(PETSCLIB)

NodeConnectivity_la_SOURCES = ../NodeConnectivity/NodeConnectivity.cpp\
										../NodeConnectivity/NodeConnectivity.h
NodeConnectivity_la_LIBADD = ${deps} $(MPILIB) $(PETSCLIB)

PointCloudFindNeighbors_la_SOURCES = ../PointCloudFindNeighbors/PointCloudFindNeighbors.cpp\
			  ../PointCloudFindNeighbors/PointCloudFindNeighbors.h
PointCloudFindNeighbors_la_LIBADD = ${deps} $(MPILIB) $(PETSCLIB) $(MULTITHREADINGLIB)

PropagateFlagsFromConnectivity_la_SOURCES = ../PropagateFlagsFromConnectivity/PropagateFlagsFromConnectivity.cpp\
			  ../PropagateFlagsFromConnectivity/PropagateFlagsFromConnectivity.h
PropagateFlagsFromConnectivity_la_LIBADD = ${deps} $(MPILIB) $(PETSCLIB)

Scotch_la_SOURCES = ../Scotch/Scotch.cpp\
                    ../Scotch/Scotch.h
Scotch_la_LIBADD = ${deps} $(SCOTCHLIB)

Shp2Kml_la_SOURCES = ../Shp2Kml/Shp2Kml.cpp\
                     ../Shp2Kml/Shp2Kml.h
Shp2Kml_la_LIBADD = ${deps} $(SHAPELIBLIB) $(MPILIB) $(PETSCLIB)

TriaSearch_la_SOURCES = ../TriaSearch/TriaSearch.cpp\
			  ../TriaSearch/TriaSearch.h
TriaSearch_la_LIBADD = ${deps} $(MPILIB) $(PETSCLIB)

TriMesh_la_SOURCES = ../TriMesh/TriMesh.cpp\
                     ../TriMesh/TriMesh.h
TriMesh_la_LIBADD = ${deps} $(MPILIB) $(PETSCLIB) $(TRIANGLELIB)

TriMeshProcessRifts_la_SOURCES = ../TriMeshProcessRifts/TriMeshProcessRifts.cpp\
			  ../TriMeshProcessRifts/TriMeshProcessRifts.h
TriMeshProcessRifts_la_LIBADD = ${deps} $(MPILIB) $(PETSCLIB)
#}}}