Index: /issm/trunk/src/m/classes/groundingline.m
===================================================================
--- /issm/trunk/src/m/classes/groundingline.m	(revision 9765)
+++ /issm/trunk/src/m/classes/groundingline.m	(revision 9766)
@@ -59,5 +59,5 @@
 				end
 				pos=find(md.mask.vertexonfloatingice); 
-				if any(md.geometry.bathymetry(pos)-md.geometry.bed(pos)>tolerance),
+				if any(md.geometry.bathymetry(pos)-md.geometry.bed(pos)>10^-9),
 					checkmessage(['bathymetry superior to bed on floating ice !']);
 				end
Index: /issm/trunk/src/m/classes/rifts.m
===================================================================
--- /issm/trunk/src/m/classes/rifts.m	(revision 9765)
+++ /issm/trunk/src/m/classes/rifts.m	(revision 9766)
@@ -48,5 +48,5 @@
 				end
 				%Check that rifts are filled with proper material
-				checkvalues(md,{'rifts.riftstruct.fill'},[WaterEnum() AirEnum() IceEnum() MelangeEnum()]);
+				checkvalues(md,{'riftstruct.fill'},[WaterEnum() AirEnum() IceEnum() MelangeEnum()]);
 			else
 				if ~isnans(obj.riftstruct),
Index: /issm/trunk/test/NightlyRun/test1110.m
===================================================================
--- /issm/trunk/test/NightlyRun/test1110.m	(revision 9765)
+++ /issm/trunk/test/NightlyRun/test1110.m	(revision 9766)
@@ -50,5 +50,5 @@
 	md.timestepping.time_step=3;
 	md.timestepping.final_time=300;
-	md.output_frequency=50;
+	md.settings.output_frequency=50;
 	md.prognostic.stabilization=1;
 	md.diagnostic.maxiter=1;
Index: /issm/trunk/test/NightlyRun/test1201.m
===================================================================
--- /issm/trunk/test/NightlyRun/test1201.m	(revision 9765)
+++ /issm/trunk/test/NightlyRun/test1201.m	(revision 9766)
@@ -37,6 +37,6 @@
 
 	%solve
-	md.isdiagnostic=0;
-	md.output_frequency=500; %keep only last step
+	md.transient.isdiagnostic=0;
+	md.settings.output_frequency=500; %keep only last step
 	md.verbose=verbose();
 	md=solve(md,TransientSolutionEnum);
Index: /issm/trunk/test/NightlyRun/test1208.m
===================================================================
--- /issm/trunk/test/NightlyRun/test1208.m	(revision 9765)
+++ /issm/trunk/test/NightlyRun/test1208.m	(revision 9766)
@@ -20,5 +20,5 @@
 %Adapt the time steps to the resolution
 md.timestepping.time_step=20;
-md.output_frequency=20;
+md.settings.output_frequency=20;
 md.timestepping.final_time=50000;
 md.prognostic.stabilization=2;
Index: /issm/trunk/test/NightlyRun/test1302.m
===================================================================
--- /issm/trunk/test/NightlyRun/test1302.m	(revision 9765)
+++ /issm/trunk/test/NightlyRun/test1302.m	(revision 9766)
@@ -20,5 +20,5 @@
 %analytical results
 %d2T/dz2-w*rho_ice*c/k*dT/dz=0   T(surface)=0  T(bed)=10   => T=A exp(alpha z)+B
-alpha=0.1/md.constants.yts*md.materials.rho_ice*md.heatcapacity/md.thermalconductivity;   %alpha=w rho_ice c /k  and w=0.1m/an
+alpha=0.1/md.constants.yts*md.materials.rho_ice*md.materials.heatcapacity/md.materials.thermalconductivity;   %alpha=w rho_ice c /k  and w=0.1m/an
 A=10/(exp(alpha*(-1000))-1);    %A=T(bed)/(exp(alpha*bed)-1)  with bed=-1000 T(bed)=10
 B=-A;
Index: /issm/trunk/test/NightlyRun/test1304.m
===================================================================
--- /issm/trunk/test/NightlyRun/test1304.m	(revision 9765)
+++ /issm/trunk/test/NightlyRun/test1304.m	(revision 9766)
@@ -19,5 +19,5 @@
 %the result is linear with depth and is equal to 0 on the upper surface (See BC)
 %d2T/dz2=0  -k*dT/dz(bed)=G  T(surface)=0  => T=-G/k*(z-surface)
-md.initialization.temperature=-0.1/md.thermalconductivity*(md.mesh.z-md.geometry.surface); %G=0.1 W/m2
+md.initialization.temperature=-0.1/md.materials.thermalconductivity*(md.mesh.z-md.geometry.surface); %G=0.1 W/m2
 
 %modeled  results
Index: /issm/trunk/test/NightlyRun/test1501.m
===================================================================
--- /issm/trunk/test/NightlyRun/test1501.m	(revision 9765)
+++ /issm/trunk/test/NightlyRun/test1501.m	(revision 9766)
@@ -6,8 +6,8 @@
 md=setflowequation(md,'macayeal','all');
 md.cluster=generic('name',oshostname(),'np',3);
-md.isthermal=0;
+md.transient.isthermal=0;
 
 md.timestepping.time_step=1;
-md.output_frequency=1;
+md.settings.output_frequency=1;
 md.timestepping.final_time=2000;
 
Index: /issm/trunk/test/NightlyRun/test1502.m
===================================================================
--- /issm/trunk/test/NightlyRun/test1502.m	(revision 9765)
+++ /issm/trunk/test/NightlyRun/test1502.m	(revision 9766)
@@ -7,8 +7,8 @@
 md=extrude(md,3,1);
 md.cluster=generic('name',oshostname(),'np',3);
-md.isthermal=0;
+md.transient.isthermal=0;
 
 md.timestepping.time_step=1;
-md.output_frequency=1;
+md.settings.output_frequency=1;
 md.timestepping.final_time=2000;